Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001448.1 Length=310 Score E Sequences producing significant alignments: (Bits) Value seq3087571 428 8e-118 seq3006688 385 8e-105 seq145150 304 2e-80 seq2800780 248 1e-63 seq3063745 217 3e-54 >seq3087571 Length=5404 Score = 428 bits (474), Expect = 8e-118 Identities = 281/309 (91%), Gaps = 1/309 (0%) Strand=Plus/Plus Query 3 ACCTGTTTGACAGTGACGCCCGGGCGTGGGGCGAGCTTGTCGGTATTGCGGGCGATGGCG 62 || |||||||| |||||||| ||||||| ||| || |||||||||||||| |||||||| Sbjct 2097 ACTTGTTTGACCGTGACGCCTGGGCGTGCGGCCAGTTTGTCGGTATTGCGCGCGATGGCA 2156 Query 63 GTGACGGTATGCCCACGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCGGTG 122 ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 2157 GTGACGGTATGCCCACGGCGCAGTGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCGGTG 2216 Query 123 GCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGT-TCGTTAAGGGTTTAAAACCA 181 |||||||||||||| || ||||||||||||||||||||| | | |||||||||||||| Sbjct 2217 GCACCAATGATTGCGATTTTGCTCATGACGTTCTCCAGTAAAGGTCAGGGTTTAAAACCA 2276 Query 182 TTCACCACTTCATTTCGCCCTTGGCGACTTTGGCGCTGAGTTCCAGCGAGCTTTCGTCGG 241 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| Sbjct 2277 GTCACCACTTCATTTCGCCCTTGGCGACTTTGGCGCTCAGTTCCAGCGAGCTTTCCTCGG 2336 Query 242 CGAGGGTCGGGTAACGCTTTTTCATGGCCGCGATCAGGGCCGCGGAATCCTTCGCTTTGG 301 ||||| ||||||||||||||||||||||||| |||||||| ||||||||||| || || Sbjct 2337 CGAGGCTCGGGTAACGCTTTTTCATGGCCGCAATCAGGGCGGCGGAATCCTTGGCCCGGG 2396 Query 302 CCGTCTCGA 310 | ||||||| Sbjct 2397 CGGTCTCGA 2405 >seq3006688 Length=705 Score = 385 bits (426), Expect = 8e-105 Identities = 271/308 (88%), Gaps = 1/308 (0%) Strand=Plus/Plus Query 1 CGACCTGTTTGACAGTGACGCCCGGGCGTGGGGCGAGCTTGTCGGTATTGCGGGCGATGG 60 ||||||||||||| |||||||||||||||| || ||| || ||||||| || || | || Sbjct 348 CGACCTGTTTGACGGTGACGCCCGGGCGTGCGGTCAGCGTGCCGGTATTACGCGCAAGGG 407 Query 61 CGGTGACGGTATGCCCACGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCGG 120 |||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| Sbjct 408 CGGTGACGGTATGCCCACGACGCAGCGCTTCTTCCAACAGTTGGCTACCGGCGCGGCCGG 467 Query 121 TGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTTCGTTAAGGGTTTAAAACC 180 |||||||||||||||| ||||||||||||||| |||||||| |||||| ||||||||||| Sbjct 468 TGGCACCAATGATTGCGATCTTGCTCATGACGCTCTCCAGTACGTTAA-GGTTTAAAACC 526 Query 181 ATTCACCACTTCATTTCGCCCTTGGCGACTTTGGCGCTGAGTTCCAGCGAGCTTTCGTCG 240 ||||||||||||||||||||||||||||||||||| | ||| ||||| ||| || || Sbjct 527 ATTCACCACTTCATTTCGCCCTTGGCGACTTTGGCACCGAGGTCCAGGCTGCTCTCATCT 586 Query 241 GCGAGGGTCGGGTAACGCTTTTTCATGGCCGCGATCAGGGCCGCGGAATCCTTCGCTTTG 300 | || ||||||||||||||||||||||||||||||| || | |||||||| || ||| Sbjct 587 TCAAGTTTCGGGTAACGCTTTTTCATGGCCGCGATCAGCGCAGTCGAATCCTTGGCCTTG 646 Query 301 GCCGTCTC 308 || || || Sbjct 647 GCGGTTTC 654 >seq145150 Length=12406 Score = 304 bits (336), Expect = 2e-80 Identities = 266/343 (78%), Gaps = 33/343 (10%) Strand=Plus/Plus Query 1 CGACCTGTTTGACAGTGACGCCCGGGCGTGGGGCGAGCTTGTCGGTATTGCGGGCGATGG 60 |||||| ||| || || | ||| ||||||| || |||||||||||||| || || |||| Sbjct 9129 CGACCTTTTTAACGGTAAGGCCTGGGCGTGCAGCCAGCTTGTCGGTATTACGCGCAATGG 9188 Query 61 CGGTGACGGTATGCCCACGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCGG 120 | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 9189 CAGTAACGGTATGCCCACGACGCAGCGCTTCTTCCAGCAGTTGGCTGCCGGCACGGCCGG 9248 Query 121 TGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTTCGTTAAGG---------- 170 ||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 9249 TGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTACGTTAGGGNNNNNNNNNN 9308 Query 171 -----------------------GTTTAAAACCATTCACCACTTCATTTCGCCCTTGGCG 207 ||| ||||||||||||||||||||||||| Sbjct 9309 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCAATCACCACTTCATTTCGCCCTTGGCG 9368 Query 208 ACTTTGGCGCTGAGTTCCAGCGAGCTTTCGTCGGCGAGGGTCGGGTAACGCTTTTTCATG 267 |||||||| | |||||||| ||||||||| | ||| ||||||||||||||||||| Sbjct 9369 ACTTTGGCACCCAGTTCCAGGCTGCTTTCGTCTTCAAGGTTCGGGTAACGCTTTTTCATT 9428 Query 268 GCCGCGATCAGGGCCGCGGAATCCTTCGCTTTGGCCGTCTCGA 310 ||||||||||| || || || ||||| || ||||| ||||||| Sbjct 9429 GCCGCGATCAGCGCAGCCGAGTCCTTGGCCTTGGCGGTCTCGA 9471 >seq2800780 Length=235 Score = 248 bits (274), Expect = 1e-63 Identities = 175/198 (88%), Gaps = 3/198 (2%) Strand=Plus/Plus Query 115 GGCCGGTGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTTCGTTAAGGGTTT 174 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| Sbjct 1 GGCCGGTGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTACGTTA-GGGTTT 59 Query 175 AAAA--CCATTCACCACTTCATTTCGCCCTTGGCGACTTTGGCGCTGAGTTCCAGCGAGC 232 |||| |||||||||||||||||||||||||||| |||||||| | |||||||| || Sbjct 60 AAAAAACCATTCACCACTTCATTTCGCCCTTGGCAACTTTGGCACCCAGTTCCAGGCTGC 119 Query 233 TTTCGTCGGCGAGGGTCGGGTAACGCTTTTTCATGGCCGCGATCAGGGCCGCGGAATCCT 292 ||||||| | ||| | ||||||||||||||||| ||||||||||| || ||||| |||| Sbjct 120 TTTCGTCTTCAAGGTTGGGGTAACGCTTTTTCATCGCCGCGATCAGTGCAGCGGAGTCCT 179 Query 293 TCGCTTTGGCCGTCTCGA 310 | || ||||| ||||||| Sbjct 180 TGGCCTTGGCGGTCTCGA 197 >seq3063745 Length=1421 Score = 217 bits (240), Expect = 3e-54 Identities = 150/170 (88%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 1 CGACCTGTTTGACAGTGACGCCCGGGCGTGGGGCGAGCTTGTCGGTATTGCGGGCGATGG 60 |||| | ||| || | | ||| ||||||| || ||| ||||||| || || || |||| Sbjct 1252 CGACTTTTTTAACGCTAAGGCCTGGGCGTGCAGCCAGCGTGTCGGTGTTACGCGCAATGG 1311 Query 61 CGGTGACGGTATGCCCACGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCGG 120 | || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1312 CCGTAACGGTATGCCCACGACGCAGCGCTTCTTCCAGCAGTTGGCTACCGGCACGGCCGG 1371 Query 121 TGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTTCGTTAAGG 170 ||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 1372 TGGCACCAATGATTGCAATCTTGCTCATGACGTTCTCCAGTACGTTAGGG 1421 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 862124606144