Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001449.1
Length=395
Score E
Sequences producing significant alignments: (Bits) Value
seq2950835 590 1e-166
seq2957521 484 1e-134
seq2950157 446 4e-123
seq154720 443 5e-122
seq3042385 89.7 1e-15
seq2378775 84.2 5e-14
>seq2950835
Length=448
Score = 590 bits (654), Expect = 1e-166
Identities = 368/395 (93%), Gaps = 0/395 (0%)
Strand=Plus/Plus
Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7 CGACGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 66
Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120
||||||||||||||| || |||||||||||||||||||||||||||||||||||| ||||
Sbjct 67 CTGTGGCGCGGTCTCCGGCTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGCTGCT 126
Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180
|||| ||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 127 GGCCAATGAAAGCCATGCGCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 186
Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240
|||||||||||| |||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 187 GGCCATCATGGCAATGGTTGCCGCCTCGGTGATCGAGCCTGGCGTGTACTTCGCCATGAA 246
Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300
||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| ||
Sbjct 247 CAGCCCGGCGGCGATTGTCGGCACCGACGTCGTCACCGTGGCGCAGACCGTCAGCAGCTG 306
Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360
||||||||| || || || ||||||||||||||||| ||||| | ||||||||||||||
Sbjct 307 GGGCTTTGCAATCACCCCCGAGGCGCTGTCGGCCGTGGCCCATGACATCGGTGAAACCAC 366
Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395
||||||||||||||||||||| || ||||| ||||
Sbjct 367 CATCCTGGCACGTGCCGGCGGTGCACCGACCCTGG 401
>seq2957521
Length=469
Score = 484 bits (536), Expect = 1e-134
Identities = 343/393 (87%), Gaps = 0/393 (0%)
Strand=Plus/Plus
Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 7 CGACGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATCGC 66
Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120
|||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct 67 CTGTGGCGCGGTCTCGGGTTTCCACGCGCTGATTTCCTCGGGCACCACGCCCAAGTTGCT 126
Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180
| || || | | |||||||||||||| ||||||| ||||||||||| ||||||||
Sbjct 127 GGACAACGAAGTCAACGCCCGTTACATCGGCTACGGCGCGATGCTGATGGAATCGTTCGT 186
Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240
|||||||||||| |||||||||||||||||||| || || ||||||||||||||||||||
Sbjct 187 GGCCATCATGGCAATGGTTGCCGCCTCGGTGATCGAACCTGGCGTGTACTTCGCCATGAA 246
Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300
||||||||| ||| | ||||| || ||| | ||||||| |||||||||||||| ||
Sbjct 247 CAGCCCGGCCGCCGTGGTCGGTGGTGATGTGATGGCCGTGGCACAAACCGTCAGCAGCTG 306
Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360
||| ||||| |||||||| || |||||| || || ||||| | ||||| ||||||||
Sbjct 307 GGGGTTTGCGATTACGCCGGAAGCGCTGCAAGCAGTGGCCCATGACATCGGCGAAACCAC 366
Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCT 393
||||||||||||||||||||| || ||||| ||
Sbjct 367 CATCCTGGCACGTGCCGGCGGTGCACCGACCCT 399
>seq2950157
Length=445
Score = 446 bits (494), Expect = 4e-123
Identities = 319/367 (87%), Gaps = 0/367 (0%)
Strand=Plus/Plus
Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60
||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 79 CGACGGCACCGGCCCGGTATGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 138
Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120
|||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| ||||
Sbjct 139 CTGTGGCGCGGTGTCGGGTTTCCACGCACTGATTTCCTCGGGCACCACGCCCAAGCTGCT 198
Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180
| | || | | | || |||||||||||||||| ||||||||||| ||||||||
Sbjct 199 GGATAACGAAGTCAACTCGCGCTACATCGGTTACGGCGCGATGCTGATGGAATCGTTCGT 258
Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240
|||||||||||| ||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 259 GGCCATCATGGCCATGGTTGCCGCTTCGGTCATTGAGCCTGGCGTGTACTTCGCCATGAA 318
Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300
|||||||||||| | |||||| | |||||||| || |||||||||||||||||||| ||
Sbjct 319 CAGCCCGGCTGCGGTAGTCGGCGCTGACGTGGTGACGGTGGCGCAAACCGTCAGCAGCTG 378
Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360
||| ||||| ||||| || || || || |||| || ||||| | ||||||||||||||
Sbjct 379 GGGGTTTGCAATTACCCCGGAAGCCTTGACGGCAGTGGCCCATGACATCGGTGAAACCAC 438
Query 361 CATCCTG 367
|||||||
Sbjct 439 CATCCTG 445
>seq154720
Length=835
Score = 443 bits (490), Expect = 5e-122
Identities = 335/395 (85%), Gaps = 0/395 (0%)
Strand=Plus/Minus
Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60
||||||||||||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 463 CGACGGCACCGGCCCGGTCTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATTACCATTGC 404
Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120
||| || ||||| || || ||||| ||||||||||| |||||||||||||||||| ||||
Sbjct 403 CTGCGGTGCGGTTTCCGGCTTCCACGCGCTGATCTCTTCGGGCACCACGCCCAAGCTGCT 344
Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180
| | || | | | || |||||||||||||||| ||||| ||||| ||||||||
Sbjct 343 GGATAACGAAGTCAACTCGCGCTACATCGGTTACGGCGCAATGCTTATGGAATCGTTCGT 284
Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240
||| |||||||| ||||||||||| |||||||| || || ||||||||||||||||||||
Sbjct 283 GGCGATCATGGCCATGGTTGCCGCTTCGGTGATCGAACCTGGCGTGTACTTCGCCATGAA 224
Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300
||||||||| || | |||||| | |||||||| || |||||||||||||||||||| ||
Sbjct 223 CAGCCCGGCGGCGGTCGTCGGCGCGGACGTGGTAACTGTGGCGCAAACCGTCAGCAGCTG 164
Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360
||| ||||| ||||| || || || || |||| || ||||| | ||||||||||||||
Sbjct 163 GGGTTTTGCAATTACCCCGGAAGCCTTGACGGCAGTGGCCCATGACATCGGTGAAACCAC 104
Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395
||||||||| |||||||| || |||||||| ||||
Sbjct 103 CATCCTGGCGCGTGCCGGTGGTGCGCCGACCCTGG 69
>seq3042385
Length=1036
Score = 89.7 bits (98), Expect = 1e-15
Identities = 51/52 (98%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATC 52
||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 985 CGACGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATC 1036
>seq2378775
Length=148
Score = 84.2 bits (92), Expect = 5e-14
Identities = 60/69 (87%), Gaps = 0/69 (0%)
Strand=Plus/Minus
Query 327 TGTCGGCCGTTGCCCACAATATCGGTGAAACCACCATCCTGGCACGTGCCGGCGGCGCGC 386
|| |||| || ||||| | ||||||||||||||||||||||| ||||||||||| ||||
Sbjct 137 TGACGGCAGTGGCCCATGACATCGGTGAAACCACCATCCTGGCGCGTGCCGGCGGTGCGC 78
Query 387 CGACTCTGG 395
|||| ||||
Sbjct 77 CGACCCTGG 69
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1125723856224
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |