Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001449.1 Length=395 Score E Sequences producing significant alignments: (Bits) Value seq2950835 590 1e-166 seq2957521 484 1e-134 seq2950157 446 4e-123 seq154720 443 5e-122 seq3042385 89.7 1e-15 seq2378775 84.2 5e-14 >seq2950835 Length=448 Score = 590 bits (654), Expect = 1e-166 Identities = 368/395 (93%), Gaps = 0/395 (0%) Strand=Plus/Plus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7 CGACGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 66 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |||| Sbjct 67 CTGTGGCGCGGTCTCCGGCTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGCTGCT 126 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 |||| ||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 127 GGCCAATGAAAGCCATGCGCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 186 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 187 GGCCATCATGGCAATGGTTGCCGCCTCGGTGATCGAGCCTGGCGTGTACTTCGCCATGAA 246 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 ||||||||| || ||||||||||||||||| |||||||||||||| ||||||||||| || Sbjct 247 CAGCCCGGCGGCGATTGTCGGCACCGACGTCGTCACCGTGGCGCAGACCGTCAGCAGCTG 306 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 ||||||||| || || || ||||||||||||||||| ||||| | |||||||||||||| Sbjct 307 GGGCTTTGCAATCACCCCCGAGGCGCTGTCGGCCGTGGCCCATGACATCGGTGAAACCAC 366 Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||||||||||||||||||||| || ||||| |||| Sbjct 367 CATCCTGGCACGTGCCGGCGGTGCACCGACCCTGG 401 >seq2957521 Length=469 Score = 484 bits (536), Expect = 1e-134 Identities = 343/393 (87%), Gaps = 0/393 (0%) Strand=Plus/Plus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || Sbjct 7 CGACGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATCGC 66 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| Sbjct 67 CTGTGGCGCGGTCTCGGGTTTCCACGCGCTGATTTCCTCGGGCACCACGCCCAAGTTGCT 126 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 | || || | | |||||||||||||| ||||||| ||||||||||| |||||||| Sbjct 127 GGACAACGAAGTCAACGCCCGTTACATCGGCTACGGCGCGATGCTGATGGAATCGTTCGT 186 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||||||||||| |||||||||||||||||||| || || |||||||||||||||||||| Sbjct 187 GGCCATCATGGCAATGGTTGCCGCCTCGGTGATCGAACCTGGCGTGTACTTCGCCATGAA 246 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 ||||||||| ||| | ||||| || ||| | ||||||| |||||||||||||| || Sbjct 247 CAGCCCGGCCGCCGTGGTCGGTGGTGATGTGATGGCCGTGGCACAAACCGTCAGCAGCTG 306 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 ||| ||||| |||||||| || |||||| || || ||||| | ||||| |||||||| Sbjct 307 GGGGTTTGCGATTACGCCGGAAGCGCTGCAAGCAGTGGCCCATGACATCGGCGAAACCAC 366 Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCT 393 ||||||||||||||||||||| || ||||| || Sbjct 367 CATCCTGGCACGTGCCGGCGGTGCACCGACCCT 399 >seq2950157 Length=445 Score = 446 bits (494), Expect = 4e-123 Identities = 319/367 (87%), Gaps = 0/367 (0%) Strand=Plus/Plus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 79 CGACGGCACCGGCCCGGTATGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 138 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 |||||||||||| ||||||||||| || ||||| ||||||||||||||||||||| |||| Sbjct 139 CTGTGGCGCGGTGTCGGGTTTCCACGCACTGATTTCCTCGGGCACCACGCCCAAGCTGCT 198 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 | | || | | | || |||||||||||||||| ||||||||||| |||||||| Sbjct 199 GGATAACGAAGTCAACTCGCGCTACATCGGTTACGGCGCGATGCTGATGGAATCGTTCGT 258 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 |||||||||||| ||||||||||| ||||| |||||||| |||||||||||||||||||| Sbjct 259 GGCCATCATGGCCATGGTTGCCGCTTCGGTCATTGAGCCTGGCGTGTACTTCGCCATGAA 318 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 |||||||||||| | |||||| | |||||||| || |||||||||||||||||||| || Sbjct 319 CAGCCCGGCTGCGGTAGTCGGCGCTGACGTGGTGACGGTGGCGCAAACCGTCAGCAGCTG 378 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 ||| ||||| ||||| || || || || |||| || ||||| | |||||||||||||| Sbjct 379 GGGGTTTGCAATTACCCCGGAAGCCTTGACGGCAGTGGCCCATGACATCGGTGAAACCAC 438 Query 361 CATCCTG 367 ||||||| Sbjct 439 CATCCTG 445 >seq154720 Length=835 Score = 443 bits (490), Expect = 5e-122 Identities = 335/395 (85%), Gaps = 0/395 (0%) Strand=Plus/Minus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATCACCATTGC 60 ||||||||||||| |||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 463 CGACGGCACCGGCCCGGTCTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATTACCATTGC 404 Query 61 CTGTGGCGCGGTCTCGGGTTTCCATGCGCTGATCTCCTCGGGCACCACGCCCAAGTTGCT 120 ||| || ||||| || || ||||| ||||||||||| |||||||||||||||||| |||| Sbjct 403 CTGCGGTGCGGTTTCCGGCTTCCACGCGCTGATCTCTTCGGGCACCACGCCCAAGCTGCT 344 Query 121 CGCCAGTGAGAGCCATGCCCGTTACATCGGTTACGGCGGCATGCTGATGGAGTCGTTCGT 180 | | || | | | || |||||||||||||||| ||||| ||||| |||||||| Sbjct 343 GGATAACGAAGTCAACTCGCGCTACATCGGTTACGGCGCAATGCTTATGGAATCGTTCGT 284 Query 181 GGCCATCATGGCGATGGTTGCCGCCTCGGTGATTGAGCCCGGCGTGTACTTCGCCATGAA 240 ||| |||||||| ||||||||||| |||||||| || || |||||||||||||||||||| Sbjct 283 GGCGATCATGGCCATGGTTGCCGCTTCGGTGATCGAACCTGGCGTGTACTTCGCCATGAA 224 Query 241 CAGCCCGGCTGCCATTGTCGGCACCGACGTGGTCACCGTGGCGCAAACCGTCAGCAGTTG 300 ||||||||| || | |||||| | |||||||| || |||||||||||||||||||| || Sbjct 223 CAGCCCGGCGGCGGTCGTCGGCGCGGACGTGGTAACTGTGGCGCAAACCGTCAGCAGCTG 164 Query 301 GGGCTTTGCCATTACGCCTGAGGCGCTGTCGGCCGTTGCCCACAATATCGGTGAAACCAC 360 ||| ||||| ||||| || || || || |||| || ||||| | |||||||||||||| Sbjct 163 GGGTTTTGCAATTACCCCGGAAGCCTTGACGGCAGTGGCCCATGACATCGGTGAAACCAC 104 Query 361 CATCCTGGCACGTGCCGGCGGCGCGCCGACTCTGG 395 ||||||||| |||||||| || |||||||| |||| Sbjct 103 CATCCTGGCGCGTGCCGGTGGTGCGCCGACCCTGG 69 >seq3042385 Length=1036 Score = 89.7 bits (98), Expect = 1e-15 Identities = 51/52 (98%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 1 CGACGGCACCGGCACGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATC 52 ||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 985 CGACGGCACCGGCCCGGTGTGGAAGGGCGGCCTGTTCCCGTTCCTGTTCATC 1036 >seq2378775 Length=148 Score = 84.2 bits (92), Expect = 5e-14 Identities = 60/69 (87%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 327 TGTCGGCCGTTGCCCACAATATCGGTGAAACCACCATCCTGGCACGTGCCGGCGGCGCGC 386 || |||| || ||||| | ||||||||||||||||||||||| ||||||||||| |||| Sbjct 137 TGACGGCAGTGGCCCATGACATCGGTGAAACCACCATCCTGGCGCGTGCCGGCGGTGCGC 78 Query 387 CGACTCTGG 395 |||| |||| Sbjct 77 CGACCCTGG 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1125723856224