Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001464.1
Length=239
Score E
Sequences producing significant alignments: (Bits) Value
seq2893167 320 2e-85
seq17007 289 4e-76
seq2869973 280 2e-73
seq2846781 156 5e-36
seq2625695 141 1e-31
seq2625696 132 6e-29
seq2890692 123 3e-26
seq2938345 107 2e-21
seq3088508 96.9 4e-18
>seq2893167
Length=320
Score = 320 bits (354), Expect = 2e-85
Identities = 201/217 (93%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 23 TGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGAAGTTGT 82
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 320 TGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCGCCGATGTTGCGGAAGAAGTTGT 261
Query 83 GAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTTGA 142
||| |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct 260 GAATGCCGTCCTGCACCAATTGCGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTTGA 201
Query 143 GGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTTCCCACG 202
|||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 200 GGGCGTAGGTGTCAACGGTGTCGTTGAAGGTGAAGATAGGGCGGTTGACGCTTTCCCATG 141
Query 203 GGTCATCTTCCGAGGCCGCTTGGGCATCGAATGGCGC 239
| |||||||||| || || ||||| |||| || ||
Sbjct 140 GATCATCTTCCGTCGCGGCCTGGGCGGCGAACGGTGC 104
>seq17007
Length=2605
Score = 289 bits (320), Expect = 4e-76
Identities = 198/223 (89%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 17 GCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGA 76
|||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1384 GCGGCTTGAGCTGCAGCACGTTGTTGGCCAGGTTGCCGACATCGCCGATGTTGCGGAAGA 1443
Query 77 AGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTG 136
||||||| | |||||| ||||||||||| ||||| || || ||||| |||||||| || |
Sbjct 1444 AGTTGTGGATGCCGTCTTGCACAAATTGCGGGGTTACAAATTGATAACCCTGGGCAATCG 1503
Query 137 GCTTGAGGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTT 196
||||||| |||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1504 GCTTGAGCGCATAGGTATCAACGGTGTCGTTGAAGGTGAAGATCGGGCGGTTGACGCTTT 1563
Query 197 CCCACGGGTCATCTTCCGAGGCCGCTTGGGCATCGAATGGCGC 239
|||| || || ||||| || || |||||||| |||| || ||
Sbjct 1564 CCCATGGATCGTCTTCGGACGCAGCTTGGGCCGCGAACGGGGC 1606
>seq2869973
Length=290
Score = 280 bits (310), Expect = 2e-73
Identities = 185/205 (90%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 23 TGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGAAGTTGT 82
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 290 TGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCGCCGATGTTGCGGAAGAAGTTGT 231
Query 83 GAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTTGA 142
|||||||||| ||||||||||| ||||| || || || || |||||||| || |||||||
Sbjct 230 GAACGCCGTCTTGCACAAATTGCGGGGTTACAAATTGGTAACCCTGGGCAATCGGCTTGA 171
Query 143 GGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTTCCCACG 202
|||| ||||| |||| ||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 170 GGGCGTAGGTATCAATGGTGTCGTTGAAGGTGAAGATCGGGCGGTTGACGCTTTCCCATG 111
Query 203 GGTCATCTTCCGAGGCCGCTTGGGC 227
| || |||||||| || || |||||
Sbjct 110 GATCGTCTTCCGACGCAGCCTGGGC 86
>seq2846781
Length=267
Score = 156 bits (172), Expect = 5e-36
Identities = 133/164 (81%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 76 AAGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATT 135
||||| || | |||| ||| || ||||| |||||||| ||||||||||||||||| | |
Sbjct 267 AAGTTATGGATGCCGGTCTGGACGAATTGCGGGGTGACAAACTGATAGCCCTGGGCCAAT 208
Query 136 GGCTTGAGGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTT 195
|||||||| || || ||||||||||||||||||||||||||||| || ||||| ||| |
Sbjct 207 GGCTTGAGCGCGTAAGTGTCAACGGTGTCGTTGAAGGTGAAGATCGGACGGTTAACGGCT 148
Query 196 TCCCACGGGTCATCTTCCGAGGCCGCTTGGGCATCGAATGGCGC 239
||||| || || |||||||| || || | || |||| || ||
Sbjct 147 TCCCATGGATCGTCTTCCGACGCTGCGTTAGCGGCGAACGGGGC 104
>seq2625695
Length=184
Score = 141 bits (156), Expect = 1e-31
Identities = 114/138 (83%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1 TCGACGCCTGCATTGAGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCA 60
||||| || || | |||||||||| || | |||| |||||| | |||||||||||||
Sbjct 47 TCGACACCGGCCGCGTGCGGCTTGAGCTGGAAAACGTCGTTGGCAAAGTTGCCGACATCA 106
Query 61 CCGATGTTGCGGAAGAAGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGA 120
|||||||||||||||||||| || | |||| ||| || ||||| |||||||| ||||||
Sbjct 107 CCGATGTTGCGGAAGAAGTTATGGATGCCGGTCTGGACGAATTGCGGGGTGACAAACTGA 166
Query 121 TAGCCCTGGGCGATTGGC 138
||||||||||| | ||||
Sbjct 167 TAGCCCTGGGCCAATGGC 184
>seq2625696
Length=184
Score = 132 bits (146), Expect = 6e-29
Identities = 112/138 (81%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 1 TCGACGCCTGCATTGAGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCA 60
||||| || || | | |||||||| || | |||| |||||| | |||||||||||||
Sbjct 47 TCGACACCGGCCGCGTGTGGCTTGAGCTGGAAAACGTCGTTGGCAAAGTTGCCGACATCA 106
Query 61 CCGATGTTGCGGAAGAAGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGA 120
|||||||||||||| ||||| || | |||| ||| || ||||| |||||||| ||||||
Sbjct 107 CCGATGTTGCGGAAAAAGTTATGGATGCCGGTCTGGACGAATTGCGGGGTGACAAACTGA 166
Query 121 TAGCCCTGGGCGATTGGC 138
||||||||||| | ||||
Sbjct 167 TAGCCCTGGGCCAATGGC 184
>seq2890692
Length=316
Score = 123 bits (136), Expect = 3e-26
Identities = 74/78 (95%), Gaps = 0/78 (0%)
Strand=Plus/Minus
Query 1 TCGACGCCTGCATTGAGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCA 60
|||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 78 TCGACGCCAGCATTATGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCG 19
Query 61 CCGATGTTGCGGAAGAAG 78
||||||||||||||||||
Sbjct 18 CCGATGTTGCGGAAGAAG 1
>seq2938345
Length=412
Score = 107 bits (118), Expect = 2e-21
Identities = 61/62 (98%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 17 GCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGA 76
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 351 GCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCGCCGATGTTGCGGAAGA 410
Query 77 AG 78
||
Sbjct 411 AG 412
>seq3088508
Length=36130
Score = 96.9 bits (106), Expect = 4e-18
Identities = 133/186 (72%), Gaps = 0/186 (0%)
Strand=Plus/Minus
Query 21 CTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGAAGTT 80
|||| ||| || | |||||||| ||| || ||| || || | || ||| || |
Sbjct 3898 CTTGGCTTGAAGTAAGTTGTTGGACAGATTTTTGACCTCCCCCAGATTATTGAAAAAATG 3839
Query 81 GTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTT 140
|||| |||||| || ||| | || |||||||| || ||| ||||||| | ||| ||
Sbjct 3838 ATGAATGCCGTCTTGAGCAACCCGGGGAGTGACGAATTGGTAGGCCTGGGCAAGTGGTTT 3779
Query 141 GAGGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTTCCCA 200
||| |||||||| || | ||||||||||| | ||| || || ||||| | | ||||||
Sbjct 3778 GAGTGCATAGGTATCCAACGTGTCGTTGAATGAGAAAATAGGTCGGTTAATACCTTCCCA 3719
Query 201 CGGGTC 206
|| ||
Sbjct 3718 TGGATC 3713
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 645685281072
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |