Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001464.1 Length=239 Score E Sequences producing significant alignments: (Bits) Value seq2893167 320 2e-85 seq17007 289 4e-76 seq2869973 280 2e-73 seq2846781 156 5e-36 seq2625695 141 1e-31 seq2625696 132 6e-29 seq2890692 123 3e-26 seq2938345 107 2e-21 seq3088508 96.9 4e-18 >seq2893167 Length=320 Score = 320 bits (354), Expect = 2e-85 Identities = 201/217 (93%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 23 TGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGAAGTTGT 82 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 320 TGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCGCCGATGTTGCGGAAGAAGTTGT 261 Query 83 GAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTTGA 142 ||| |||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| Sbjct 260 GAATGCCGTCCTGCACCAATTGCGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTTGA 201 Query 143 GGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTTCCCACG 202 |||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| | Sbjct 200 GGGCGTAGGTGTCAACGGTGTCGTTGAAGGTGAAGATAGGGCGGTTGACGCTTTCCCATG 141 Query 203 GGTCATCTTCCGAGGCCGCTTGGGCATCGAATGGCGC 239 | |||||||||| || || ||||| |||| || || Sbjct 140 GATCATCTTCCGTCGCGGCCTGGGCGGCGAACGGTGC 104 >seq17007 Length=2605 Score = 289 bits (320), Expect = 4e-76 Identities = 198/223 (89%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 17 GCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGA 76 |||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 1384 GCGGCTTGAGCTGCAGCACGTTGTTGGCCAGGTTGCCGACATCGCCGATGTTGCGGAAGA 1443 Query 77 AGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTG 136 ||||||| | |||||| ||||||||||| ||||| || || ||||| |||||||| || | Sbjct 1444 AGTTGTGGATGCCGTCTTGCACAAATTGCGGGGTTACAAATTGATAACCCTGGGCAATCG 1503 Query 137 GCTTGAGGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTT 196 ||||||| |||||||| |||||||||||||||||||||||||| |||||||||||||||| Sbjct 1504 GCTTGAGCGCATAGGTATCAACGGTGTCGTTGAAGGTGAAGATCGGGCGGTTGACGCTTT 1563 Query 197 CCCACGGGTCATCTTCCGAGGCCGCTTGGGCATCGAATGGCGC 239 |||| || || ||||| || || |||||||| |||| || || Sbjct 1564 CCCATGGATCGTCTTCGGACGCAGCTTGGGCCGCGAACGGGGC 1606 >seq2869973 Length=290 Score = 280 bits (310), Expect = 2e-73 Identities = 185/205 (90%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 23 TGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGAAGTTGT 82 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 290 TGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCGCCGATGTTGCGGAAGAAGTTGT 231 Query 83 GAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTTGA 142 |||||||||| ||||||||||| ||||| || || || || |||||||| || ||||||| Sbjct 230 GAACGCCGTCTTGCACAAATTGCGGGGTTACAAATTGGTAACCCTGGGCAATCGGCTTGA 171 Query 143 GGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTTCCCACG 202 |||| ||||| |||| ||||||||||||||||||||| |||||||||||||||||||| | Sbjct 170 GGGCGTAGGTATCAATGGTGTCGTTGAAGGTGAAGATCGGGCGGTTGACGCTTTCCCATG 111 Query 203 GGTCATCTTCCGAGGCCGCTTGGGC 227 | || |||||||| || || ||||| Sbjct 110 GATCGTCTTCCGACGCAGCCTGGGC 86 >seq2846781 Length=267 Score = 156 bits (172), Expect = 5e-36 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 76 AAGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATT 135 ||||| || | |||| ||| || ||||| |||||||| ||||||||||||||||| | | Sbjct 267 AAGTTATGGATGCCGGTCTGGACGAATTGCGGGGTGACAAACTGATAGCCCTGGGCCAAT 208 Query 136 GGCTTGAGGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTT 195 |||||||| || || ||||||||||||||||||||||||||||| || ||||| ||| | Sbjct 207 GGCTTGAGCGCGTAAGTGTCAACGGTGTCGTTGAAGGTGAAGATCGGACGGTTAACGGCT 148 Query 196 TCCCACGGGTCATCTTCCGAGGCCGCTTGGGCATCGAATGGCGC 239 ||||| || || |||||||| || || | || |||| || || Sbjct 147 TCCCATGGATCGTCTTCCGACGCTGCGTTAGCGGCGAACGGGGC 104 >seq2625695 Length=184 Score = 141 bits (156), Expect = 1e-31 Identities = 114/138 (83%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 1 TCGACGCCTGCATTGAGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCA 60 ||||| || || | |||||||||| || | |||| |||||| | ||||||||||||| Sbjct 47 TCGACACCGGCCGCGTGCGGCTTGAGCTGGAAAACGTCGTTGGCAAAGTTGCCGACATCA 106 Query 61 CCGATGTTGCGGAAGAAGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGA 120 |||||||||||||||||||| || | |||| ||| || ||||| |||||||| |||||| Sbjct 107 CCGATGTTGCGGAAGAAGTTATGGATGCCGGTCTGGACGAATTGCGGGGTGACAAACTGA 166 Query 121 TAGCCCTGGGCGATTGGC 138 ||||||||||| | |||| Sbjct 167 TAGCCCTGGGCCAATGGC 184 >seq2625696 Length=184 Score = 132 bits (146), Expect = 6e-29 Identities = 112/138 (81%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 1 TCGACGCCTGCATTGAGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCA 60 ||||| || || | | |||||||| || | |||| |||||| | ||||||||||||| Sbjct 47 TCGACACCGGCCGCGTGTGGCTTGAGCTGGAAAACGTCGTTGGCAAAGTTGCCGACATCA 106 Query 61 CCGATGTTGCGGAAGAAGTTGTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGA 120 |||||||||||||| ||||| || | |||| ||| || ||||| |||||||| |||||| Sbjct 107 CCGATGTTGCGGAAAAAGTTATGGATGCCGGTCTGGACGAATTGCGGGGTGACAAACTGA 166 Query 121 TAGCCCTGGGCGATTGGC 138 ||||||||||| | |||| Sbjct 167 TAGCCCTGGGCCAATGGC 184 >seq2890692 Length=316 Score = 123 bits (136), Expect = 3e-26 Identities = 74/78 (95%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 1 TCGACGCCTGCATTGAGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCA 60 |||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 78 TCGACGCCAGCATTATGCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCG 19 Query 61 CCGATGTTGCGGAAGAAG 78 |||||||||||||||||| Sbjct 18 CCGATGTTGCGGAAGAAG 1 >seq2938345 Length=412 Score = 107 bits (118), Expect = 2e-21 Identities = 61/62 (98%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 17 GCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGA 76 ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| Sbjct 351 GCGGCTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCGCCGATGTTGCGGAAGA 410 Query 77 AG 78 || Sbjct 411 AG 412 >seq3088508 Length=36130 Score = 96.9 bits (106), Expect = 4e-18 Identities = 133/186 (72%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 21 CTTGAGTTGCAGCACGTTGTTGGCCAGGTTGCCGACATCACCGATGTTGCGGAAGAAGTT 80 |||| ||| || | |||||||| ||| || ||| || || | || ||| || | Sbjct 3898 CTTGGCTTGAAGTAAGTTGTTGGACAGATTTTTGACCTCCCCCAGATTATTGAAAAAATG 3839 Query 81 GTGAACGCCGTCCTGCACAAATTGTGGGGTGACGAACTGATAGCCCTGGGCGATTGGCTT 140 |||| |||||| || ||| | || |||||||| || ||| ||||||| | ||| || Sbjct 3838 ATGAATGCCGTCTTGAGCAACCCGGGGAGTGACGAATTGGTAGGCCTGGGCAAGTGGTTT 3779 Query 141 GAGGGCATAGGTGTCAACGGTGTCGTTGAAGGTGAAGATGGGGCGGTTGACGCTTTCCCA 200 ||| |||||||| || | ||||||||||| | ||| || || ||||| | | |||||| Sbjct 3778 GAGTGCATAGGTATCCAACGTGTCGTTGAATGAGAAAATAGGTCGGTTAATACCTTCCCA 3719 Query 201 CGGGTC 206 || || Sbjct 3718 TGGATC 3713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 645685281072