Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001502.1 Length=108 Score E Sequences producing significant alignments: (Bits) Value seq2694932 178 6e-43 seq2521474 178 6e-43 seq1957059 172 3e-41 seq1831662 168 3e-40 seq450300 100 1e-19 >seq2694932 Length=196 Score = 178 bits (196), Expect = 6e-43 Identities = 104/108 (96%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 GACCTGGTCTGAGCCGAGGTAGGCTGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 ||||||||| | |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 55 GACCTGGTCGGGGCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 114 Query 61 AGTGTGAACTCCTGCCGATGGCTGTGACCCCGCGCCGTGCTACGTCGA 108 |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 115 AGTGTGAACTCCTGCCGAAGGCTGTGACCCCGCGCCGTGCTACGTCGA 162 >seq2521474 Length=169 Score = 178 bits (196), Expect = 6e-43 Identities = 104/108 (96%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 GACCTGGTCTGAGCCGAGGTAGGCTGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 ||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 41 GACCTGGTCTGGGCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 100 Query 61 AGTGTGAACTCCTGCCGATGGCTGTGACCCCGCGCCGTGCTACGTCGA 108 ||| ||||||||||||| |||||||||||||||||||||||||||||| Sbjct 101 AGTATGAACTCCTGCCGTTGGCTGTGACCCCGCGCCGTGCTACGTCGA 148 >seq1957059 Length=127 Score = 172 bits (190), Expect = 3e-41 Identities = 103/108 (95%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 GACCTGGTCTGAGCCGAGGTAGGCTGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GACCTGGTCTGGGCCGAGGTAGGTCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 Query 61 AGTGTGAACTCCTGCCGATGGCTGTGACCCCGCGCCGTGCTACGTCGA 108 ||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 AGTGTTAACTCCTGCCGTTGGCTGTGACCCCGCGCCGTGCTACGTCGA 108 >seq1831662 Length=127 Score = 168 bits (186), Expect = 3e-40 Identities = 102/108 (94%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 1 GACCTGGTCTGAGCCGAGGTAGGCTGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 1 GACCTGGTCTGGGCCGAGGTAGGTCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 Query 61 AGTGTGAACTCCTGCCGATGGCTGTGACCCCGCGCCGTGCTACGTCGA 108 ||| | ||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 AGTATTAACTCCTGCCGTTGGCTGTGACCCCGCGCCGTGCTACGTCGA 108 >seq450300 Length=101 Score = 100 bits (110), Expect = 1e-19 Identities = 60/63 (95%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 1 GACCTGGTCTGAGCCGAGGTAGGCTGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 63 GACCTGGTCTGGGCCGAGGTAGGTCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 4 Query 61 AGT 63 ||| Sbjct 3 AGT 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 242372884260