Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001503.1 Length=170 Score E Sequences producing significant alignments: (Bits) Value seq43426 223 3e-56 seq2665609 215 4e-54 seq2886244 205 8e-51 seq2604581 178 1e-42 seq2604580 172 5e-41 seq2928329 163 2e-38 seq2035823 129 5e-28 seq1812910 125 6e-27 >seq43426 Length=3837 Score = 223 bits (246), Expect = 3e-56 Identities = 152/170 (89%), Gaps = 1/170 (1%) Strand=Plus/Plus Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60 ||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| Sbjct 3211 GTCAAGTTT-TACAAGAACGCCATGGGCGCCGGCATCAAGCCGATTTGCGGCGCCGACCT 3269 Query 61 GTGGCTGTCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAA 120 ||||||||| |||||||||||||| ||| |||||||||||||| |||||||||||||||| Sbjct 3270 GTGGCTGTCGAACAAAGACCCGGATAACCCCCTGAGCCGCATCAGCCTGCTGGCGATGAA 3329 Query 121 CGGTGTTGGTTACCGCAACCTCACCGAGCTGATTTCCCGTGGTTTCATCG 170 || || ||||| |||||||||||||| ||||| || || || || |||| Sbjct 3330 TGGCGTGGGTTATCGCAACCTCACCGAACTGATCTCGCGCGGCTTTATCG 3379 >seq2665609 Length=190 Score = 215 bits (238), Expect = 4e-54 Identities = 139/152 (91%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 19 CGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCTGTGGCTGTCCAACAAAGA 78 |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 1 CGCCATGGGCGCAGGTATCAAGCCGATCTGTGGCGCCGACCTGTGGCTGTCCAACAAAGA 60 Query 79 CCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAACGGTGTTGGTTACCGCAA 138 |||||| ||| | ||||| |||||| ||||||||||||||||||| || ||||| ||||| Sbjct 61 CCCGGATAACCCGCTGAGTCGCATCAGCCTGCTGGCGATGAACGGCGTGGGTTATCGCAA 120 Query 139 CCTCACCGAGCTGATTTCCCGTGGTTTCATCG 170 ||| |||||||||||||||||||| || |||| Sbjct 121 CCTGACCGAGCTGATTTCCCGTGGCTTTATCG 152 >seq2886244 Length=310 Score = 205 bits (226), Expect = 8e-51 Identities = 143/163 (88%), Gaps = 0/163 (0%) Strand=Plus/Minus Query 8 TTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCTGTGGCTG 67 |||||||||||||||||||||||||| |||||||||||||| |||| ||||||||||||| Sbjct 219 TTCTACAAAAACGCCATGGGCGCCGGCATCAAGCCGATCTGTGGCGTCGACCTGTGGCTG 160 Query 68 TCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAACGGTGTT 127 || |||||||||||||| ||| | ||||| |||||| ||||| |||||||||| || || Sbjct 159 TCGAACAAAGACCCGGATAACCCACTGAGTCGCATCAGCCTGTTGGCGATGAATGGCGTG 100 Query 128 GGTTACCGCAACCTCACCGAGCTGATTTCCCGTGGTTTCATCG 170 ||||| |||||||||||||| |||| ||||| || || |||| Sbjct 99 GGTTATCGCAACCTCACCGAATTGATCTCCCGCGGGTTTATCG 57 >seq2604581 Length=181 Score = 178 bits (196), Expect = 1e-42 Identities = 109/115 (95%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60 |||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 68 GTCAAGTT-CTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATTTGCGGCGCCGACCT 126 Query 61 GTGGCTGTCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCG 115 |||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||| Sbjct 127 GTGGCTGTCCAACAAAGACCCGGATAACCCCCTGAGCCGCATCAGCCTGTTGGCG 181 >seq2604580 Length=181 Score = 172 bits (190), Expect = 5e-41 Identities = 108/115 (94%), Gaps = 1/115 (1%) Strand=Plus/Plus Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60 |||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 68 GTCAAGTT-CTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATTTGCGGTGCCGACCT 126 Query 61 GTGGCTGTCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCG 115 |||||||||||||||||||||||| ||| |||||||||||||| ||||| ||||| Sbjct 127 GTGGCTGTCCAACAAAGACCCGGATAACCCCCTGAGCCGCATCAGCCTGTTGGCG 181 >seq2928329 Length=387 Score = 163 bits (180), Expect = 2e-38 Identities = 107/118 (91%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 53 GCCGACCTGTGGCTGTCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTG 112 |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| || Sbjct 1 GCCGACCTGTGGCTGTCCAACAAAGACCCGGATAACCCCCTGAGCCGCATCAGCCTGTTG 60 Query 113 GCGATGAACGGTGTTGGTTACCGCAACCTCACCGAGCTGATTTCCCGTGGTTTCATCG 170 ||||||||||| || ||||| |||||||||||||| ||||||||||||| || |||| Sbjct 61 GCGATGAACGGCGTCGGTTATCGCAACCTCACCGAATTGATTTCCCGTGGCTTTATCG 118 >seq2035823 Length=127 Score = 129 bits (142), Expect = 5e-28 Identities = 78/81 (96%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60 |||||||| ||||||||||||||||||||| ||||||||||||||||| ||||||||||| Sbjct 80 GTCAAGTT-CTACAAAAACGCCATGGGCGCAGGTATCAAGCCGATCTGTGGCGCCGACCT 22 Query 61 GTGGCTGTCCAACAAAGACCC 81 ||||||||||||||||||||| Sbjct 21 GTGGCTGTCCAACAAAGACCC 1 >seq1812910 Length=127 Score = 125 bits (138), Expect = 6e-27 Identities = 77/81 (95%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60 |||||||| |||||||| |||||||||||| ||||||||||||||||| ||||||||||| Sbjct 80 GTCAAGTT-CTACAAAACCGCCATGGGCGCAGGTATCAAGCCGATCTGTGGCGCCGACCT 22 Query 61 GTGGCTGTCCAACAAAGACCC 81 ||||||||||||||||||||| Sbjct 21 GTGGCTGTCCAACAAAGACCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 431491606101