Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001503.1
Length=170
Score E
Sequences producing significant alignments: (Bits) Value
seq43426 223 3e-56
seq2665609 215 4e-54
seq2886244 205 8e-51
seq2604581 178 1e-42
seq2604580 172 5e-41
seq2928329 163 2e-38
seq2035823 129 5e-28
seq1812910 125 6e-27
>seq43426
Length=3837
Score = 223 bits (246), Expect = 3e-56
Identities = 152/170 (89%), Gaps = 1/170 (1%)
Strand=Plus/Plus
Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60
||||||||| ||||| ||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 3211 GTCAAGTTT-TACAAGAACGCCATGGGCGCCGGCATCAAGCCGATTTGCGGCGCCGACCT 3269
Query 61 GTGGCTGTCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAA 120
||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||
Sbjct 3270 GTGGCTGTCGAACAAAGACCCGGATAACCCCCTGAGCCGCATCAGCCTGCTGGCGATGAA 3329
Query 121 CGGTGTTGGTTACCGCAACCTCACCGAGCTGATTTCCCGTGGTTTCATCG 170
|| || ||||| |||||||||||||| ||||| || || || || ||||
Sbjct 3330 TGGCGTGGGTTATCGCAACCTCACCGAACTGATCTCGCGCGGCTTTATCG 3379
>seq2665609
Length=190
Score = 215 bits (238), Expect = 4e-54
Identities = 139/152 (91%), Gaps = 0/152 (0%)
Strand=Plus/Plus
Query 19 CGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCTGTGGCTGTCCAACAAAGA 78
|||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1 CGCCATGGGCGCAGGTATCAAGCCGATCTGTGGCGCCGACCTGTGGCTGTCCAACAAAGA 60
Query 79 CCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAACGGTGTTGGTTACCGCAA 138
|||||| ||| | ||||| |||||| ||||||||||||||||||| || ||||| |||||
Sbjct 61 CCCGGATAACCCGCTGAGTCGCATCAGCCTGCTGGCGATGAACGGCGTGGGTTATCGCAA 120
Query 139 CCTCACCGAGCTGATTTCCCGTGGTTTCATCG 170
||| |||||||||||||||||||| || ||||
Sbjct 121 CCTGACCGAGCTGATTTCCCGTGGCTTTATCG 152
>seq2886244
Length=310
Score = 205 bits (226), Expect = 8e-51
Identities = 143/163 (88%), Gaps = 0/163 (0%)
Strand=Plus/Minus
Query 8 TTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCTGTGGCTG 67
|||||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||
Sbjct 219 TTCTACAAAAACGCCATGGGCGCCGGCATCAAGCCGATCTGTGGCGTCGACCTGTGGCTG 160
Query 68 TCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCGATGAACGGTGTT 127
|| |||||||||||||| ||| | ||||| |||||| ||||| |||||||||| || ||
Sbjct 159 TCGAACAAAGACCCGGATAACCCACTGAGTCGCATCAGCCTGTTGGCGATGAATGGCGTG 100
Query 128 GGTTACCGCAACCTCACCGAGCTGATTTCCCGTGGTTTCATCG 170
||||| |||||||||||||| |||| ||||| || || ||||
Sbjct 99 GGTTATCGCAACCTCACCGAATTGATCTCCCGCGGGTTTATCG 57
>seq2604581
Length=181
Score = 178 bits (196), Expect = 1e-42
Identities = 109/115 (95%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 68 GTCAAGTT-CTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATTTGCGGCGCCGACCT 126
Query 61 GTGGCTGTCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCG 115
|||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||
Sbjct 127 GTGGCTGTCCAACAAAGACCCGGATAACCCCCTGAGCCGCATCAGCCTGTTGGCG 181
>seq2604580
Length=181
Score = 172 bits (190), Expect = 5e-41
Identities = 108/115 (94%), Gaps = 1/115 (1%)
Strand=Plus/Plus
Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60
|||||||| |||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 68 GTCAAGTT-CTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATTTGCGGTGCCGACCT 126
Query 61 GTGGCTGTCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTGGCG 115
|||||||||||||||||||||||| ||| |||||||||||||| ||||| |||||
Sbjct 127 GTGGCTGTCCAACAAAGACCCGGATAACCCCCTGAGCCGCATCAGCCTGTTGGCG 181
>seq2928329
Length=387
Score = 163 bits (180), Expect = 2e-38
Identities = 107/118 (91%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 53 GCCGACCTGTGGCTGTCCAACAAAGACCCGGACAACGCCCTGAGCCGCATCGGCCTGCTG 112
|||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||| ||
Sbjct 1 GCCGACCTGTGGCTGTCCAACAAAGACCCGGATAACCCCCTGAGCCGCATCAGCCTGTTG 60
Query 113 GCGATGAACGGTGTTGGTTACCGCAACCTCACCGAGCTGATTTCCCGTGGTTTCATCG 170
||||||||||| || ||||| |||||||||||||| ||||||||||||| || ||||
Sbjct 61 GCGATGAACGGCGTCGGTTATCGCAACCTCACCGAATTGATTTCCCGTGGCTTTATCG 118
>seq2035823
Length=127
Score = 129 bits (142), Expect = 5e-28
Identities = 78/81 (96%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60
|||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 80 GTCAAGTT-CTACAAAAACGCCATGGGCGCAGGTATCAAGCCGATCTGTGGCGCCGACCT 22
Query 61 GTGGCTGTCCAACAAAGACCC 81
|||||||||||||||||||||
Sbjct 21 GTGGCTGTCCAACAAAGACCC 1
>seq1812910
Length=127
Score = 125 bits (138), Expect = 6e-27
Identities = 77/81 (95%), Gaps = 1/81 (1%)
Strand=Plus/Minus
Query 1 GTCAAGTTTCTACAAAAACGCCATGGGCGCCGGTATCAAGCCGATCTGCGGCGCCGACCT 60
|||||||| |||||||| |||||||||||| ||||||||||||||||| |||||||||||
Sbjct 80 GTCAAGTT-CTACAAAACCGCCATGGGCGCAGGTATCAAGCCGATCTGTGGCGCCGACCT 22
Query 61 GTGGCTGTCCAACAAAGACCC 81
|||||||||||||||||||||
Sbjct 21 GTGGCTGTCCAACAAAGACCC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 431491606101
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |