Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001545.1 Length=359 Score E Sequences producing significant alignments: (Bits) Value seq3015174 540 2e-151 seq2974727 513 3e-143 seq331279 480 2e-133 seq3073691 468 1e-129 >seq3015174 Length=765 Score = 540 bits (598), Expect = 2e-151 Identities = 334/357 (94%), Gaps = 0/357 (0%) Strand=Plus/Plus Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62 |||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| ||| Sbjct 40 AAGTTCGGTACCTGACGCAGCGCCGGCAGGATGTTCACATTCGGCGAGGCCTTGGAGTAC 99 Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122 |||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 100 ATGTAGCACACGTAGCCGCTGCAGAAACCGCAGAAGTTGCACGGGCCCATCTGTGCGCCG 159 Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182 ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 160 TAGGGGTTGGTGTACGGCCCCGACGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCA 219 Query 183 ACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAG 242 |||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 220 ACCTCGGCGGCCGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGACTCCAAC 279 Query 243 GGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCAAC 302 |||||||||||||| || ||||| ||||||||||||||||| || ||||||||||||| | Sbjct 280 GGGAACGGGTTGGAACGATCCGGCGCATACGGGTTGCCACCACGGCCTTCGCCCACCACC 339 Query 303 TGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359 || ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 340 TGACCTTTTACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 396 >seq2974727 Length=535 Score = 513 bits (568), Expect = 3e-143 Identities = 328/357 (92%), Gaps = 0/357 (0%) Strand=Plus/Plus Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62 |||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| ||| Sbjct 101 AAGTTCGGCACCTGACGCAGCGCCGGCAGGATGTTTACGTTCGGCGAGGCCTTGGAGTAC 160 Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122 |||||||||||||| || ||||| |||||||||||||||||||| |||||||||||||| Sbjct 161 ATGTAGCACACGTAGCCACTGCAGAAACCGCAGAAGTTGCACGGCCCCATCTGCGCGCCG 220 Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182 |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| ||| Sbjct 221 TAGGGGTTTGTGTACGGCCCCGAAGTATTGGCCGATGGCAGGTTGTAGGGTTTGTAGCCG 280 Query 183 ACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAG 242 || |||| ||| ||||||||||||||||| || || |||||||||||||||||||||| Sbjct 281 ACGTCGGTAGCCGCTTTCTGAAACAGCTGCGCAGACACGGTGTTTTTCTGCGATTCCAGC 340 Query 243 GGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCAAC 302 ||||||||||||||||||||||| ||||| |||||||| || |||||||| ||||||||| Sbjct 341 GGGAACGGGTTGGAGCGGTCCGGCGCATAAGGGTTGCCGCCACGACCTTCACCCACCAAC 400 Query 303 TGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359 |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| Sbjct 401 TGGCCTTTTACGGTCCAGGCCTGCCCGGAGGTGCCGAAGACTTTTTCGGCGTAGTCG 457 >seq331279 Length=1061 Score = 480 bits (532), Expect = 2e-133 Identities = 320/356 (90%), Gaps = 0/356 (0%) Strand=Plus/Plus Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62 |||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| ||| Sbjct 327 AAGTTCGGCACCTGACGCAACGCCGGCAGGATGTTCACGTTCGGCGATGCCTTGGAGTAC 386 Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122 |||||||| || || || ||||| ||||||||||| |||||||| ||||||||||| || Sbjct 387 ATGTAGCAAACATAGCCACTGCAGAAACCGCAGAAATTGCACGGCCCCATCTGCGCACCG 446 Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182 |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| ||| Sbjct 447 TAGGGGTTTGTGTACGGCCCCGAGGTATTGGCGGACGGCAGGTTGTAGGGTTTGTAGCCG 506 Query 183 ACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAG 242 || |||| || ||||||||||||||||| || || |||||||||||||||| || || Sbjct 507 ACGTCGGTGGCCGCTTTCTGAAACAGCTGCGCCGACACGGTGTTTTTCTGCGCTTGCAGC 566 Query 243 GGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCAAC 302 ||||||||||||||||||||||| |||||||||||||| || || ||||| ||||||||| Sbjct 567 GGGAACGGGTTGGAGCGGTCCGGCGCATACGGGTTGCCGCCACGGCCTTCACCCACCAAC 626 Query 303 TGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTC 358 ||||| || ||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 627 TGGCCCTTTACGGTCCAGGCTTGGCCGGAGGTGCCGAAGACTTTTTCGGCGTAGTC 682 >seq3073691 Length=1751 Score = 468 bits (518), Expect = 1e-129 Identities = 319/359 (89%), Gaps = 0/359 (0%) Strand=Plus/Plus Query 1 CGAAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAAT 60 |||| |||||||| ||||||| ||||||||| ||||||||||| ||||| |||||||| | Sbjct 1069 CGAAATTCGGCACTTGGCGCAACGCCGGCAGAATGTTCACGTTGGGCGACGCCTTGGAGT 1128 Query 61 ACATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGC 120 |||||||||||||||| || |||||||| ||||||||||| ||||| ||||||||||||| Sbjct 1129 ACATGTAGCACACGTAGCCACTGCAAAAGCCGCAGAAGTTACACGGTCCCATCTGCGCGC 1188 Query 121 CATAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAAC 180 | || ||||||||||| |||||||| |||||||||||||||||||||||||||||||||| Sbjct 1189 CGTAAGGGTTGGTGTAAGGCCCCGACGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAAC 1248 Query 181 CGACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCA 240 | || || ||||| ||||||||||||||||| |||||||| ||||||||||| | |||| Sbjct 1249 CCACATCAGCAGCCGCTTTCTGAAACAGCTGCGCGGAGACCGTGTTTTTCTGTGCCTCCA 1308 Query 241 AGGGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCA 300 ||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| ||||||| Sbjct 1309 GCGGGAAGGGGTTCGAGCGATCCGGTGCATACGGGTTGCCGCCGCGACCTTCACCCACCA 1368 Query 301 ACTGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359 | || || ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||| Sbjct 1369 ATTGACCCTTGACGGTCCACGCCTGGCCGGAAGTGCCAAAGACTTTTTCCGCGTAATCG 1427 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1014081820896