Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001545.1
Length=359
Score E
Sequences producing significant alignments: (Bits) Value
seq3015174 540 2e-151
seq2974727 513 3e-143
seq331279 480 2e-133
seq3073691 468 1e-129
>seq3015174
Length=765
Score = 540 bits (598), Expect = 2e-151
Identities = 334/357 (94%), Gaps = 0/357 (0%)
Strand=Plus/Plus
Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62
|||||||| ||||| ||||||||||||||||||||||| |||||||| |||||||| |||
Sbjct 40 AAGTTCGGTACCTGACGCAGCGCCGGCAGGATGTTCACATTCGGCGAGGCCTTGGAGTAC 99
Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 100 ATGTAGCACACGTAGCCGCTGCAGAAACCGCAGAAGTTGCACGGGCCCATCTGTGCGCCG 159
Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 160 TAGGGGTTGGTGTACGGCCCCGACGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCA 219
Query 183 ACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAG 242
|||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 220 ACCTCGGCGGCCGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGACTCCAAC 279
Query 243 GGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCAAC 302
|||||||||||||| || ||||| ||||||||||||||||| || ||||||||||||| |
Sbjct 280 GGGAACGGGTTGGAACGATCCGGCGCATACGGGTTGCCACCACGGCCTTCGCCCACCACC 339
Query 303 TGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359
|| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 340 TGACCTTTTACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 396
>seq2974727
Length=535
Score = 513 bits (568), Expect = 3e-143
Identities = 328/357 (92%), Gaps = 0/357 (0%)
Strand=Plus/Plus
Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62
|||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| |||
Sbjct 101 AAGTTCGGCACCTGACGCAGCGCCGGCAGGATGTTTACGTTCGGCGAGGCCTTGGAGTAC 160
Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122
|||||||||||||| || ||||| |||||||||||||||||||| ||||||||||||||
Sbjct 161 ATGTAGCACACGTAGCCACTGCAGAAACCGCAGAAGTTGCACGGCCCCATCTGCGCGCCG 220
Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182
|||||||| |||||||||||||| ||||||||||| |||||||||||||||||||| |||
Sbjct 221 TAGGGGTTTGTGTACGGCCCCGAAGTATTGGCCGATGGCAGGTTGTAGGGTTTGTAGCCG 280
Query 183 ACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAG 242
|| |||| ||| ||||||||||||||||| || || ||||||||||||||||||||||
Sbjct 281 ACGTCGGTAGCCGCTTTCTGAAACAGCTGCGCAGACACGGTGTTTTTCTGCGATTCCAGC 340
Query 243 GGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCAAC 302
||||||||||||||||||||||| ||||| |||||||| || |||||||| |||||||||
Sbjct 341 GGGAACGGGTTGGAGCGGTCCGGCGCATAAGGGTTGCCGCCACGACCTTCACCCACCAAC 400
Query 303 TGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359
|||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 401 TGGCCTTTTACGGTCCAGGCCTGCCCGGAGGTGCCGAAGACTTTTTCGGCGTAGTCG 457
>seq331279
Length=1061
Score = 480 bits (532), Expect = 2e-133
Identities = 320/356 (90%), Gaps = 0/356 (0%)
Strand=Plus/Plus
Query 3 AAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAATAC 62
|||||||||||||| |||| ||||||||||||||||||||||||||| |||||||| |||
Sbjct 327 AAGTTCGGCACCTGACGCAACGCCGGCAGGATGTTCACGTTCGGCGATGCCTTGGAGTAC 386
Query 63 ATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGCCA 122
|||||||| || || || ||||| ||||||||||| |||||||| ||||||||||| ||
Sbjct 387 ATGTAGCAAACATAGCCACTGCAGAAACCGCAGAAATTGCACGGCCCCATCTGCGCACCG 446
Query 123 TAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAACCG 182
|||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 447 TAGGGGTTTGTGTACGGCCCCGAGGTATTGGCGGACGGCAGGTTGTAGGGTTTGTAGCCG 506
Query 183 ACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCAAG 242
|| |||| || ||||||||||||||||| || || |||||||||||||||| || ||
Sbjct 507 ACGTCGGTGGCCGCTTTCTGAAACAGCTGCGCCGACACGGTGTTTTTCTGCGCTTGCAGC 566
Query 243 GGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCAAC 302
||||||||||||||||||||||| |||||||||||||| || || ||||| |||||||||
Sbjct 567 GGGAACGGGTTGGAGCGGTCCGGCGCATACGGGTTGCCGCCACGGCCTTCACCCACCAAC 626
Query 303 TGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTC 358
||||| || ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 627 TGGCCCTTTACGGTCCAGGCTTGGCCGGAGGTGCCGAAGACTTTTTCGGCGTAGTC 682
>seq3073691
Length=1751
Score = 468 bits (518), Expect = 1e-129
Identities = 319/359 (89%), Gaps = 0/359 (0%)
Strand=Plus/Plus
Query 1 CGAAGTTCGGCACCTGGCGCAGCGCCGGCAGGATGTTCACGTTCGGCGAAGCCTTGGAAT 60
|||| |||||||| ||||||| ||||||||| ||||||||||| ||||| |||||||| |
Sbjct 1069 CGAAATTCGGCACTTGGCGCAACGCCGGCAGAATGTTCACGTTGGGCGACGCCTTGGAGT 1128
Query 61 ACATGTAGCACACGTAACCGCTGCAAAAACCGCAGAAGTTGCACGGGCCCATCTGCGCGC 120
|||||||||||||||| || |||||||| ||||||||||| ||||| |||||||||||||
Sbjct 1129 ACATGTAGCACACGTAGCCACTGCAAAAGCCGCAGAAGTTACACGGTCCCATCTGCGCGC 1188
Query 121 CATAGGGGTTGGTGTACGGCCCCGAGGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAAC 180
| || ||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1189 CGTAAGGGTTGGTGTAAGGCCCCGACGTATTGGCCGACGGCAGGTTGTAGGGTTTGTAAC 1248
Query 181 CGACCTCGGCAGCGGCTTTCTGAAACAGCTGTGCGGAGACGGTGTTTTTCTGCGATTCCA 240
| || || ||||| ||||||||||||||||| |||||||| ||||||||||| | ||||
Sbjct 1249 CCACATCAGCAGCCGCTTTCTGAAACAGCTGCGCGGAGACCGTGTTTTTCTGTGCCTCCA 1308
Query 241 AGGGGAACGGGTTGGAGCGGTCCGGGGCATACGGGTTGCCACCGCGACCTTCGCCCACCA 300
||||| ||||| ||||| ||||| |||||||||||||| ||||||||||| |||||||
Sbjct 1309 GCGGGAAGGGGTTCGAGCGATCCGGTGCATACGGGTTGCCGCCGCGACCTTCACCCACCA 1368
Query 301 ACTGGCCTTTGACGGTCCAGGCCTGGCCGGAGGTGCCGAAGACTTTTTCCGCGTAGTCG 359
| || || ||||||||||| ||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1369 ATTGACCCTTGACGGTCCACGCCTGGCCGGAAGTGCCAAAGACTTTTTCCGCGTAATCG 1427
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1014081820896
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