Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001569.1
Length=509
Score E
Sequences producing significant alignments: (Bits) Value
seq3082472 636 5e-180
seq3024802 609 7e-172
seq2997319 524 2e-146
seq119641 455 1e-125
seq323883 286 1e-74
>seq3082472
Length=2521
Score = 636 bits (704), Expect = 5e-180
Identities = 447/508 (88%), Gaps = 3/508 (1%)
Strand=Plus/Plus
Query 2 GACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACCGCACTG 61
|| ||||| ||||| |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 172 GATGGTCGCCCGTCACCGACCCTTGGTTCGCGTGGCGGCCTGTACCCGGAGACCGCACTG 231
Query 62 ATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTG 121
||||||||||| |||||||| |||||||||||| ||||||||||||||||||| ||||||
Sbjct 232 ATTTCGGTGACTGGCCAGGACGTGCTGCCCAAGCTGCAGGCCCAGGCTGAAGCCGCTGTG 291
Query 122 CGTTTGTTGGGCTTTACGCCGACCAACTCGCCAGGCGTACCACAACTGACCGTGACCCTG 181
|| || ||||||| || |||||||| |||||||| | || ||||||||||| ||||||
Sbjct 292 CGCCTGCTGGGCTTCACCCCGACCAATTCGCCAGGTGCGCCGCAACTGACCGTTACCCTG 351
Query 182 GCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATCGGC 241
||||| || ||||||||||||||||| || ||||||||||||||||| || |||||||||
Sbjct 352 GCCGAACTGAAATACCAGTCGCCCAAGGAAGGCCTGTATGTGACCGAAGCGTCCATCGGC 411
Query 242 GCCACCTTCAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCC 301
|| ||||||||||| |||||||| ||||| ||||| ||||||||||||||||| |||||
Sbjct 412 GCAACCTTCAAGTCCGACGTCAGCGCCGGTACCCGTCGTTACAGTGGCCGCTATGCCGCG 471
Query 302 TCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTCAGC 361
|| ||||||||||| || ||||||||||| || |||||||||||||||||||||||||||
Sbjct 472 TCCCTCAACCAGCGCTTTGGCATGTCGCCGAATCAGGAAACCAACACCAAGCTGGTCAGC 531
Query 362 GACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTC 421
|||||||||||||||||| ||||||| |||||||| ||||||||||||||||| |||||
Sbjct 532 GACGTGCTCAGCGATGCCTTGACCCGGCTGTTCAAAGACCCAAGCATCGGCCAGTTGCTC 591
Query 422 AGCGCGCAATAAGCCGCTCACaaaaaaaCCGGGCTCATCGCTGAGCCCGGtttttttATG 481
|| |||||||||| | || ||||||||||||||||| ||||||||||||||| ||
Sbjct 592 AGTTCGCAATAAGCTG-TCCAGGGAAAACCGGGCTCATCGCAGAGCCCGGTTTTTTTTTG 650
Query 482 CCTGTGGTTTTGTCATGCCGCCGTATCG 509
||||| | || ||| || || ||||||
Sbjct 651 CCTGTCGCTT--TCAGGCGGCGGTATCG 676
>seq3024802
Length=845
Score = 609 bits (674), Expect = 7e-172
Identities = 441/508 (87%), Gaps = 3/508 (1%)
Strand=Plus/Minus
Query 2 GACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACCGCACTG 61
|||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| ||
Sbjct 730 GACGGTCGTCCGTCGCCGACGCTGGGTTCGCGTGGCGGGCTGTACCCTGAGACCGCGCTT 671
Query 62 ATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTG 121
|||||||| ||||| || || |||||||||||| ||||||||||||| ||||| || |||
Sbjct 670 ATTTCGGTCACCGGTCAAGACGTGCTGCCCAAGCTGCAGGCCCAGGCCGAAGCCGCCGTG 611
Query 122 CGTTTGTTGGGCTTTACGCCGACCAACTCGCCAGGCGTACCACAACTGACCGTGACCCTG 181
|| |||||||||| || || |||||||||| |||| || || |||||| | ||||||
Sbjct 610 CGCCTGTTGGGCTTCACACCCGCCAACTCGCCGGGCGCGCCTCAGCTGACCATCACCCTG 551
Query 182 GCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATCGGC 241
||||| || |||||||||||||||||||| ||| |||| ||||| || |||||||| |||
Sbjct 550 GCCGAACTGAAATACCAGTCGCCCAAAGAAGGCTTGTACGTGACTGAAGCTTCCATTGGC 491
Query 242 GCCACCTTCAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCC 301
|| || |||||||| ||||||||||| |||||||| || |||||||||||||||| |||
Sbjct 490 GCGACGTTCAAGTCCGACGTCAGTGCTGGCACCCGTCGCTACAGTGGCCGCTACGGCGCA 431
Query 302 TCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTCAGC 361
||||| || ||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 430 TCGCTGAATCAGCGTTTCGGCATGTCGCCCAACCAGGAGACCAACACCAAGCTGGTCAGC 371
Query 362 GACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTC 421
||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| ||||||
Sbjct 370 GACGTCCTCAGCGACGCCCTGACTCGCCTGTTCAAAGACCCAAGCATCGGCCAGCTGCTC 311
Query 422 AGCGCGCAATAAGCCGCTCACaaaaaaaCCGGGCTCATCGCTGAGCCCGGtttttttATG 481
|||||||| ||| || || |||||||||||||||| || ||||||||||||||||| |
Sbjct 310 AGCGCGCAGTAA-CCCTGCATAAAAAAACCGGGCTCAGCGATGAGCCCGGTTTTTTTACG 252
Query 482 CCTGTGGTTTTGTCATGCCGCCGTATCG 509
||||| | || ||| ||||| || |||
Sbjct 251 CCTGTCGCTT--TCACGCCGCGGTTTCG 226
>seq2997319
Length=647
Score = 524 bits (580), Expect = 2e-146
Identities = 429/522 (82%), Gaps = 16/522 (3%)
Strand=Plus/Minus
Query 2 GACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACCGCACTG 61
|| |||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || |||
Sbjct 610 GATGGTCGTCCTTCGCCCACCCTGGGCTCCCGTGGTGGCCTGTACCCTGAGACTGCGCTG 551
Query 62 ATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTG 121
|||||||| || ||||| |||||||||||| |||| |||||||||||||| || |||
Sbjct 550 ATTTCGGTCCAGGGTCAGGACGTGCTGCCCAAGCTGCAAGCCCAGGCTGAAGCAGCCGTG 491
Query 122 CGTTTGTTGGGCTTTACGCCGACCAACTCGCCAGGCGTACCACAACTGACCGTGACCCTG 181
|| || |||||||||| ||| |||||||||| |||| || || ||||| | ||||||
Sbjct 490 CGCCTGCTGGGCTTTACCCCGGCCAACTCGCCGGGCGCGCCGCAGTTGACCATCACCCTG 431
Query 182 GCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATCGGC 241
|| ||||| || ||||||||||||||||| |||||||||||||| || || |||||||||
Sbjct 430 GCTGAGCTCAAGTACCAGTCGCCCAAAGAAGGCCTGTATGTGACGGAAGCCTCCATCGGC 371
Query 242 GCCACCTTCAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCC 301
|| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||| |||
Sbjct 370 GCGACCTTCAAGTCCGACGTCAGCGCCGGTACACGCCGCTACAGTGGCCGCTACGGCGCG 311
Query 302 TCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTCAGC 361
|| || |||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 310 TCCCTGAACCAGCGTTTCGGTATGTCGCCGAACCAGGAAACCAACACCAAGCTGGTCAGC 251
Query 362 GACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTC 421
|||||| | ||||| |||||||| ||| ||||||| ||||| |||||||| ||||||
Sbjct 250 GACGTGTTGAGCGACGCCCTGACGCGCTTGTTCAAAGACCCGAGCATCGGTTCGCTGCTC 191
Query 422 AGCGCGCAATAAGC----------CGCTCA----CaaaaaaaCCGGGCTCATCGCTGAGC 467
| |||||| ||||| ||| || | | |||||||||| | |||||
Sbjct 190 AACGCGCAGTAAGCGTCATGCGGGCGCGCAACGCCCCGATCACCGGGCTCAGCAATGAGC 131
Query 468 CCGGtttttttATGCCTGTGGTTTTGTCATGCCGCCGTATCG 509
||||||||||||||||||| | | |||||| ||||| |||
Sbjct 130 CCGGTTTTTTTATGCCTGTAGCCT--TCATGCAGCCGTTTCG 91
>seq119641
Length=1546
Score = 455 bits (504), Expect = 1e-125
Identities = 344/405 (85%), Gaps = 0/405 (0%)
Strand=Plus/Plus
Query 29 TCGCGTGGCGGCCTGTACCCGGAGACCGCACTGATTTCGGTGACCGGCCAGGATGTGCTG 88
|| ||||| ||||||||||| ||||| || ||||||||||| |||||||| ||||||
Sbjct 799 TCCCGTGGTGGCCTGTACCCTGAGACTGCGCTGATTTCGGTACAAGGCCAGGACGTGCTG 858
Query 89 CCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTGCGTTTGTTGGGCTTTACGCCGACCAAC 148
|||||| |||| |||||||||||||| || ||||| || ||||||| || ||| |||||
Sbjct 859 CCCAAGCTGCAAGCCCAGGCTGAAGCCGCCGTGCGCCTGCTGGGCTTCACCCCGGCCAAC 918
Query 149 TCGCCAGGCGTACCACAACTGACCGTGACCCTGGCCGAGCTTAAATACCAGTCGCCCAAA 208
||||| |||| || || ||||| | |||||||| || || || |||||||||||||||
Sbjct 919 TCGCCGGGCGCGCCGCAGTTGACCATCACCCTGGCTGAACTGAAGTACCAGTCGCCCAAA 978
Query 209 GACGGCCTGTATGTGACCGAGGCTTCCATCGGCGCCACCTTCAAGTCTGACGTCAGTGCC 268
|| |||||||||||||| || || ||||||||||| ||||||||||| ||||||||||||
Sbjct 979 GAAGGCCTGTATGTGACGGAAGCCTCCATCGGCGCAACCTTCAAGTCCGACGTCAGTGCC 1038
Query 269 GGCACCCGCCGTTACAGTGGCCGCTACGCCGCCTCGCTCAACCAGCGTTTCGGCATGTCG 328
|| || ||||| |||||||||||||||| ||| || || |||||||| ||||| ||||||
Sbjct 1039 GGTACACGCCGCTACAGTGGCCGCTACGGCGCGTCCCTGAACCAGCGCTTCGGTATGTCG 1098
Query 329 CCCAACCAGGAAACCAACACCAAGCTGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGC 388
|| |||||||||||||||||||||||||||||||||||| | || ||||||||||| |||
Sbjct 1099 CCGAACCAGGAAACCAACACCAAGCTGGTCAGCGACGTGTTGAGTGATGCCCTGACGCGC 1158
Query 389 CTGTTCAAGGACCCAAGCATCGGCCAACTGCTCAGCGCGCAATAA 433
||||||| |||||||||||||| || |||||| |||| |||
Sbjct 1159 TTGTTCAAAGACCCAAGCATCGGTTCGCTTCTCAGCTCGCAGTAA 1203
>seq323883
Length=529
Score = 286 bits (316), Expect = 1e-74
Identities = 198/223 (89%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 239 GGCGCCACCTTCAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCC 298
||||| || |||||||| |||||||||||||||||||| || ||||| |||||||||| |
Sbjct 2 GGCGCGACGTTCAAGTCCGACGTCAGTGCCGGCACCCGTCGCTACAGCGGCCGCTACGGC 61
Query 299 GCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTC 358
|| ||||| || ||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct 62 GCATCGCTGAATCAGCGTTTCGGCATGTCGCCCAATCAAGAGACCAACACCAAGCTGGTC 121
Query 359 AGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTG 418
|||||||| ||||| || |||||||| ||||||||||| |||||||||||||||||||||
Sbjct 122 AGCGACGTCCTCAGTGACGCCCTGACTCGCCTGTTCAAAGACCCAAGCATCGGCCAACTG 181
Query 419 CTCAGCGCGCAATAAGCCGCTCACaaaaaaaCCGGGCTCATCG 461
||||||||||| ||| || || |||||||||||||||| ||
Sbjct 182 CTCAGCGCGCAGTAA-CCCTGCATAAAAAAACCGGGCTCAGCG 223
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1479256968096
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