Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001569.1 Length=509 Score E Sequences producing significant alignments: (Bits) Value seq3082472 636 5e-180 seq3024802 609 7e-172 seq2997319 524 2e-146 seq119641 455 1e-125 seq323883 286 1e-74 >seq3082472 Length=2521 Score = 636 bits (704), Expect = 5e-180 Identities = 447/508 (88%), Gaps = 3/508 (1%) Strand=Plus/Plus Query 2 GACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACCGCACTG 61 || ||||| ||||| |||||||| || ||||||||||||||||||||||||||||||||| Sbjct 172 GATGGTCGCCCGTCACCGACCCTTGGTTCGCGTGGCGGCCTGTACCCGGAGACCGCACTG 231 Query 62 ATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTG 121 ||||||||||| |||||||| |||||||||||| ||||||||||||||||||| |||||| Sbjct 232 ATTTCGGTGACTGGCCAGGACGTGCTGCCCAAGCTGCAGGCCCAGGCTGAAGCCGCTGTG 291 Query 122 CGTTTGTTGGGCTTTACGCCGACCAACTCGCCAGGCGTACCACAACTGACCGTGACCCTG 181 || || ||||||| || |||||||| |||||||| | || ||||||||||| |||||| Sbjct 292 CGCCTGCTGGGCTTCACCCCGACCAATTCGCCAGGTGCGCCGCAACTGACCGTTACCCTG 351 Query 182 GCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATCGGC 241 ||||| || ||||||||||||||||| || ||||||||||||||||| || ||||||||| Sbjct 352 GCCGAACTGAAATACCAGTCGCCCAAGGAAGGCCTGTATGTGACCGAAGCGTCCATCGGC 411 Query 242 GCCACCTTCAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCC 301 || ||||||||||| |||||||| ||||| ||||| ||||||||||||||||| ||||| Sbjct 412 GCAACCTTCAAGTCCGACGTCAGCGCCGGTACCCGTCGTTACAGTGGCCGCTATGCCGCG 471 Query 302 TCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTCAGC 361 || ||||||||||| || ||||||||||| || ||||||||||||||||||||||||||| Sbjct 472 TCCCTCAACCAGCGCTTTGGCATGTCGCCGAATCAGGAAACCAACACCAAGCTGGTCAGC 531 Query 362 GACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTC 421 |||||||||||||||||| ||||||| |||||||| ||||||||||||||||| ||||| Sbjct 532 GACGTGCTCAGCGATGCCTTGACCCGGCTGTTCAAAGACCCAAGCATCGGCCAGTTGCTC 591 Query 422 AGCGCGCAATAAGCCGCTCACaaaaaaaCCGGGCTCATCGCTGAGCCCGGtttttttATG 481 || |||||||||| | || ||||||||||||||||| ||||||||||||||| || Sbjct 592 AGTTCGCAATAAGCTG-TCCAGGGAAAACCGGGCTCATCGCAGAGCCCGGTTTTTTTTTG 650 Query 482 CCTGTGGTTTTGTCATGCCGCCGTATCG 509 ||||| | || ||| || || |||||| Sbjct 651 CCTGTCGCTT--TCAGGCGGCGGTATCG 676 >seq3024802 Length=845 Score = 609 bits (674), Expect = 7e-172 Identities = 441/508 (87%), Gaps = 3/508 (1%) Strand=Plus/Minus Query 2 GACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACCGCACTG 61 |||||||||||||||||||| ||||| ||||||||||| |||||||| |||||||| || Sbjct 730 GACGGTCGTCCGTCGCCGACGCTGGGTTCGCGTGGCGGGCTGTACCCTGAGACCGCGCTT 671 Query 62 ATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTG 121 |||||||| ||||| || || |||||||||||| ||||||||||||| ||||| || ||| Sbjct 670 ATTTCGGTCACCGGTCAAGACGTGCTGCCCAAGCTGCAGGCCCAGGCCGAAGCCGCCGTG 611 Query 122 CGTTTGTTGGGCTTTACGCCGACCAACTCGCCAGGCGTACCACAACTGACCGTGACCCTG 181 || |||||||||| || || |||||||||| |||| || || |||||| | |||||| Sbjct 610 CGCCTGTTGGGCTTCACACCCGCCAACTCGCCGGGCGCGCCTCAGCTGACCATCACCCTG 551 Query 182 GCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATCGGC 241 ||||| || |||||||||||||||||||| ||| |||| ||||| || |||||||| ||| Sbjct 550 GCCGAACTGAAATACCAGTCGCCCAAAGAAGGCTTGTACGTGACTGAAGCTTCCATTGGC 491 Query 242 GCCACCTTCAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCC 301 || || |||||||| ||||||||||| |||||||| || |||||||||||||||| ||| Sbjct 490 GCGACGTTCAAGTCCGACGTCAGTGCTGGCACCCGTCGCTACAGTGGCCGCTACGGCGCA 431 Query 302 TCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTCAGC 361 ||||| || ||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 430 TCGCTGAATCAGCGTTTCGGCATGTCGCCCAACCAGGAGACCAACACCAAGCTGGTCAGC 371 Query 362 GACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTC 421 ||||| |||||||| |||||||| ||||||||||| ||||||||||||||||| |||||| Sbjct 370 GACGTCCTCAGCGACGCCCTGACTCGCCTGTTCAAAGACCCAAGCATCGGCCAGCTGCTC 311 Query 422 AGCGCGCAATAAGCCGCTCACaaaaaaaCCGGGCTCATCGCTGAGCCCGGtttttttATG 481 |||||||| ||| || || |||||||||||||||| || ||||||||||||||||| | Sbjct 310 AGCGCGCAGTAA-CCCTGCATAAAAAAACCGGGCTCAGCGATGAGCCCGGTTTTTTTACG 252 Query 482 CCTGTGGTTTTGTCATGCCGCCGTATCG 509 ||||| | || ||| ||||| || ||| Sbjct 251 CCTGTCGCTT--TCACGCCGCGGTTTCG 226 >seq2997319 Length=647 Score = 524 bits (580), Expect = 2e-146 Identities = 429/522 (82%), Gaps = 16/522 (3%) Strand=Plus/Minus Query 2 GACGGTCGTCCGTCGCCGACCCTGGGCTCGCGTGGCGGCCTGTACCCGGAGACCGCACTG 61 || |||||||| ||||| ||||||||||| ||||| ||||||||||| ||||| || ||| Sbjct 610 GATGGTCGTCCTTCGCCCACCCTGGGCTCCCGTGGTGGCCTGTACCCTGAGACTGCGCTG 551 Query 62 ATTTCGGTGACCGGCCAGGATGTGCTGCCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTG 121 |||||||| || ||||| |||||||||||| |||| |||||||||||||| || ||| Sbjct 550 ATTTCGGTCCAGGGTCAGGACGTGCTGCCCAAGCTGCAAGCCCAGGCTGAAGCAGCCGTG 491 Query 122 CGTTTGTTGGGCTTTACGCCGACCAACTCGCCAGGCGTACCACAACTGACCGTGACCCTG 181 || || |||||||||| ||| |||||||||| |||| || || ||||| | |||||| Sbjct 490 CGCCTGCTGGGCTTTACCCCGGCCAACTCGCCGGGCGCGCCGCAGTTGACCATCACCCTG 431 Query 182 GCCGAGCTTAAATACCAGTCGCCCAAAGACGGCCTGTATGTGACCGAGGCTTCCATCGGC 241 || ||||| || ||||||||||||||||| |||||||||||||| || || ||||||||| Sbjct 430 GCTGAGCTCAAGTACCAGTCGCCCAAAGAAGGCCTGTATGTGACGGAAGCCTCCATCGGC 371 Query 242 GCCACCTTCAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCCGCC 301 || ||||||||||| |||||||| ||||| || ||||| |||||||||||||||| ||| Sbjct 370 GCGACCTTCAAGTCCGACGTCAGCGCCGGTACACGCCGCTACAGTGGCCGCTACGGCGCG 311 Query 302 TCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTCAGC 361 || || |||||||||||||| |||||||| |||||||||||||||||||||||||||||| Sbjct 310 TCCCTGAACCAGCGTTTCGGTATGTCGCCGAACCAGGAAACCAACACCAAGCTGGTCAGC 251 Query 362 GACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTGCTC 421 |||||| | ||||| |||||||| ||| ||||||| ||||| |||||||| |||||| Sbjct 250 GACGTGTTGAGCGACGCCCTGACGCGCTTGTTCAAAGACCCGAGCATCGGTTCGCTGCTC 191 Query 422 AGCGCGCAATAAGC----------CGCTCA----CaaaaaaaCCGGGCTCATCGCTGAGC 467 | |||||| ||||| ||| || | | |||||||||| | ||||| Sbjct 190 AACGCGCAGTAAGCGTCATGCGGGCGCGCAACGCCCCGATCACCGGGCTCAGCAATGAGC 131 Query 468 CCGGtttttttATGCCTGTGGTTTTGTCATGCCGCCGTATCG 509 ||||||||||||||||||| | | |||||| ||||| ||| Sbjct 130 CCGGTTTTTTTATGCCTGTAGCCT--TCATGCAGCCGTTTCG 91 >seq119641 Length=1546 Score = 455 bits (504), Expect = 1e-125 Identities = 344/405 (85%), Gaps = 0/405 (0%) Strand=Plus/Plus Query 29 TCGCGTGGCGGCCTGTACCCGGAGACCGCACTGATTTCGGTGACCGGCCAGGATGTGCTG 88 || ||||| ||||||||||| ||||| || ||||||||||| |||||||| |||||| Sbjct 799 TCCCGTGGTGGCCTGTACCCTGAGACTGCGCTGATTTCGGTACAAGGCCAGGACGTGCTG 858 Query 89 CCCAAGTTGCAGGCCCAGGCTGAAGCTGCTGTGCGTTTGTTGGGCTTTACGCCGACCAAC 148 |||||| |||| |||||||||||||| || ||||| || ||||||| || ||| ||||| Sbjct 859 CCCAAGCTGCAAGCCCAGGCTGAAGCCGCCGTGCGCCTGCTGGGCTTCACCCCGGCCAAC 918 Query 149 TCGCCAGGCGTACCACAACTGACCGTGACCCTGGCCGAGCTTAAATACCAGTCGCCCAAA 208 ||||| |||| || || ||||| | |||||||| || || || ||||||||||||||| Sbjct 919 TCGCCGGGCGCGCCGCAGTTGACCATCACCCTGGCTGAACTGAAGTACCAGTCGCCCAAA 978 Query 209 GACGGCCTGTATGTGACCGAGGCTTCCATCGGCGCCACCTTCAAGTCTGACGTCAGTGCC 268 || |||||||||||||| || || ||||||||||| ||||||||||| |||||||||||| Sbjct 979 GAAGGCCTGTATGTGACGGAAGCCTCCATCGGCGCAACCTTCAAGTCCGACGTCAGTGCC 1038 Query 269 GGCACCCGCCGTTACAGTGGCCGCTACGCCGCCTCGCTCAACCAGCGTTTCGGCATGTCG 328 || || ||||| |||||||||||||||| ||| || || |||||||| ||||| |||||| Sbjct 1039 GGTACACGCCGCTACAGTGGCCGCTACGGCGCGTCCCTGAACCAGCGCTTCGGTATGTCG 1098 Query 329 CCCAACCAGGAAACCAACACCAAGCTGGTCAGCGACGTGCTCAGCGATGCCCTGACCCGC 388 || |||||||||||||||||||||||||||||||||||| | || ||||||||||| ||| Sbjct 1099 CCGAACCAGGAAACCAACACCAAGCTGGTCAGCGACGTGTTGAGTGATGCCCTGACGCGC 1158 Query 389 CTGTTCAAGGACCCAAGCATCGGCCAACTGCTCAGCGCGCAATAA 433 ||||||| |||||||||||||| || |||||| |||| ||| Sbjct 1159 TTGTTCAAAGACCCAAGCATCGGTTCGCTTCTCAGCTCGCAGTAA 1203 >seq323883 Length=529 Score = 286 bits (316), Expect = 1e-74 Identities = 198/223 (89%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 239 GGCGCCACCTTCAAGTCTGACGTCAGTGCCGGCACCCGCCGTTACAGTGGCCGCTACGCC 298 ||||| || |||||||| |||||||||||||||||||| || ||||| |||||||||| | Sbjct 2 GGCGCGACGTTCAAGTCCGACGTCAGTGCCGGCACCCGTCGCTACAGCGGCCGCTACGGC 61 Query 299 GCCTCGCTCAACCAGCGTTTCGGCATGTCGCCCAACCAGGAAACCAACACCAAGCTGGTC 358 || ||||| || ||||||||||||||||||||||| || || |||||||||||||||||| Sbjct 62 GCATCGCTGAATCAGCGTTTCGGCATGTCGCCCAATCAAGAGACCAACACCAAGCTGGTC 121 Query 359 AGCGACGTGCTCAGCGATGCCCTGACCCGCCTGTTCAAGGACCCAAGCATCGGCCAACTG 418 |||||||| ||||| || |||||||| ||||||||||| ||||||||||||||||||||| Sbjct 122 AGCGACGTCCTCAGTGACGCCCTGACTCGCCTGTTCAAAGACCCAAGCATCGGCCAACTG 181 Query 419 CTCAGCGCGCAATAAGCCGCTCACaaaaaaaCCGGGCTCATCG 461 ||||||||||| ||| || || |||||||||||||||| || Sbjct 182 CTCAGCGCGCAGTAA-CCCTGCATAAAAAAACCGGGCTCAGCG 223 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1479256968096