Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001575.1
Length=261
Score E
Sequences producing significant alignments: (Bits) Value
seq351012 266 5e-69
seq227057 253 3e-65
seq3073622 248 1e-63
seq3088129 232 1e-58
>seq351012
Length=4711
Score = 266 bits (294), Expect = 5e-69
Identities = 215/261 (82%), Gaps = 13/261 (5%)
Strand=Plus/Plus
Query 1 CGACGTTGACGCTGGCATCGGCCGGCAATTGCGGGTCAAGCCACAGGTTATGGCGGCCCG 60
||||||||||||||||||||||||| || | |||||||||||||||||||||||||| |
Sbjct 1654 CGACGTTGACGCTGGCATCGGCCGGTAACTCGGGGTCAAGCCACAGGTTATGGCGGCCGG 1713
Query 61 GCCCACCGCAGCCCATGGTCAGGGCGCCCAGTTTGAGCTGTCTTTTAGTCA-TTGCGCAG 119
| || ||||||||||| ||||||||||| ||||| |||||||||||||||| ||| |||
Sbjct 1714 GGCCGCCGCAGCCCATCGTCAGGGCGCCAAGTTTCAGCTGTCTTTTAGTCATTTGTTCAG 1773
Query 120 TAGTCCTTCAAGCGGTCAGGGCTGGGTGGTGACGACGGCGGGTTGCAAGGCGGCCGCGAA 179
| ||||| |||| || || | ||||||||||||||||||||||||||
Sbjct 1774 TGTTCCTTGAAGC------------GTTTTGGCCACGGCGGGTTGCAAGGCGGCCGCGAA 1821
Query 180 TGAAGGGTCAAACAACGTGGCGGCCGAGTAAGACTTGACCAGACCCAGGCCGGCAAAAAA 239
|||| ||| |||| |||| ||||| || ||||||||||| || ||| |||||||||
Sbjct 1822 TGAATCGTCGAACAGGCTGGCCGCCGAATAGGACTTGACCAGGCCTTGGCTGGCAAAAAA 1881
Query 240 GTCCACGGTCTTTTGCGCCTC 260
|||||||||||||||||| ||
Sbjct 1882 GTCCACGGTCTTTTGCGCTTC 1902
>seq227057
Length=9500
Score = 253 bits (280), Expect = 3e-65
Identities = 214/262 (82%), Gaps = 1/262 (0%)
Strand=Plus/Minus
Query 1 CGACGTTGACGCTGGCATCGGCCGGCAATTGCGGGTCAAGCCACAGGTTATGGCGGCCCG 60
|||||||||||||||| ||||||||||| |||||||| ||||| || || ||||||||||
Sbjct 1822 CGACGTTGACGCTGGCGTCGGCCGGCAAGTGCGGGTCCAGCCATAGATTGTGGCGGCCCG 1763
Query 61 GCCCACCGCAGCCCATGGTCAGGGCGCCCAGTTTGAGCTGTCTTTTAGTCAT-TGCGCAG 119
|||| ||||| ||||||||||||||||| ||||||||||||| || ||||| | | ||
Sbjct 1762 GCCCGCCGCAACCCATGGTCAGGGCGCCGAGTTTGAGCTGTCGTTGGGTCATATCAGAAG 1703
Query 120 TAGTCCTTCAAGCGGTCAGGGCTGGGTGGTGACGACGGCGGGTTGCAAGGCGGCCGCGAA 179
||||| || | ||| |||||||| | ||||||||||||||| | ||||| |||
Sbjct 1702 AGTTCCTTGAAATGTTCACGGCTGGGTCTGGGCGACGGCGGGTTGCAGCGAGGCCGAGAA 1643
Query 180 TGAAGGGTCAAACAACGTGGCGGCCGAGTAAGACTTGACCAGACCCAGGCCGGCAAAAAA 239
||| || |||| | || || ||||||||||||||||| || |||| ||| |||||
Sbjct 1642 GGAATCATCGAACAGGCTCGCTGCGGAGTAAGACTTGACCAGGCCAAGGCTGGCGAAAAA 1583
Query 240 GTCCACGGTCTTTTGCGCCTCG 261
|||||||||||||||||| |||
Sbjct 1582 GTCCACGGTCTTTTGCGCTTCG 1561
>seq3073622
Length=1748
Score = 248 bits (274), Expect = 1e-63
Identities = 211/261 (81%), Gaps = 13/261 (5%)
Strand=Plus/Minus
Query 1 CGACGTTGACGCTGGCATCGGCCGGCAATTGCGGGTCAAGCCACAGGTTATGGCGGCCCG 60
|||| |||||||||||||||||||| || | ||||||||||||||||| |||||||| |
Sbjct 316 CGACATTGACGCTGGCATCGGCCGGTAACTCGGGGTCAAGCCACAGGTTGTGGCGGCCGG 257
Query 61 GCCCACCGCAGCCCATGGTCAGGGCGCCCAGTTTGAGCTGTCTTTTAGTCATTG-CGCAG 119
| || ||||||||||| ||||||||||| ||||| ||||||||||||||||||| ||
Sbjct 256 GGCCGCCGCAGCCCATCGTCAGGGCGCCAAGTTTCAGCTGTCTTTTAGTCATTGATTAAG 197
Query 120 TAGTCCTTCAAGCGGTCAGGGCTGGGTGGTGACGACGGCGGGTTGCAAGGCGGCCGCGAA 179
| ||||| |||| || || | ||||||||||||||||||||||||||
Sbjct 196 TGTTCCTTGAAGC------------GTTTTGGCCACGGCGGGTTGCAAGGCGGCCGCGAA 149
Query 180 TGAAGGGTCAAACAACGTGGCGGCCGAGTAAGACTTGACCAGACCCAGGCCGGCAAAAAA 239
||| ||| |||| |||| ||||| || || |||||||| ||| ||| |||||||||
Sbjct 148 TGAGTCGTCGAACAGGCTGGCCGCCGAATAGGATTTGACCAGGCCCTGGCTGGCAAAAAA 89
Query 240 GTCCACGGTCTTTTGCGCCTC 260
|||||||||||||||||| ||
Sbjct 88 GTCCACGGTCTTTTGCGCTTC 68
>seq3088129
Length=7432
Score = 232 bits (256), Expect = 1e-58
Identities = 211/262 (81%), Gaps = 3/262 (1%)
Strand=Plus/Plus
Query 1 CGACGTTGACGCTGGCATCGGCCGGCAATTGCGGGTCAAGCCACAGGTTATGGCGGCCCG 60
||| |||||||||||| ||||| ||||||||||| || ||||||||||| ||||||||||
Sbjct 7137 CGATGTTGACGCTGGCGTCGGCAGGCAATTGCGGATCGAGCCACAGGTTGTGGCGGCCCG 7196
Query 61 GCCCACCGCAGCCCATGGTCAGGGCGCCCAGTTTGAGCTGTCTTTTAGTCAT-TGCGCAG 119
| ||||||| ||||||||||| |||||||||||||||||||| | | ||||| | | |
Sbjct 7197 GGCCACCGCTGCCCATGGTCAAGGCGCCCAGTTTGAGCTGTCGTGTGGTCATGTCAGAGG 7256
Query 120 TAGTCCTTCAAGCGGTCAGGGCTG-GGTGGTGACGACGGCGGGTTGCAAGGCGGCCGCGA 178
| ||||| | ||||||||| | | ||| ||||||| || |||| ||| || ||
Sbjct 7257 CAATCCTTGGGGTATTCAGGGCTGTGTTTGTG-CGACGGCCGGCTGCAGGGCCGCGCTGA 7315
Query 179 ATGAAGGGTCAAACAACGTGGCGGCCGAGTAAGACTTGACCAGACCCAGGCCGGCAAAAA 238
|||| ||||| |||| ||||||||| | | || |||||||| ||| ||| ||| ||||
Sbjct 7316 ATGAGGGGTCGAACAGGCTGGCGGCCGGGAACGATTTGACCAGGCCCTGGCTGGCGAAAA 7375
Query 239 AGTCCACGGTCTTTTGCGCCTC 260
||||||||||||| ||||| ||
Sbjct 7376 AGTCCACGGTCTTCTGCGCTTC 7397
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 713978916570
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |