Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001575.1 Length=261 Score E Sequences producing significant alignments: (Bits) Value seq351012 266 5e-69 seq227057 253 3e-65 seq3073622 248 1e-63 seq3088129 232 1e-58 >seq351012 Length=4711 Score = 266 bits (294), Expect = 5e-69 Identities = 215/261 (82%), Gaps = 13/261 (5%) Strand=Plus/Plus Query 1 CGACGTTGACGCTGGCATCGGCCGGCAATTGCGGGTCAAGCCACAGGTTATGGCGGCCCG 60 ||||||||||||||||||||||||| || | |||||||||||||||||||||||||| | Sbjct 1654 CGACGTTGACGCTGGCATCGGCCGGTAACTCGGGGTCAAGCCACAGGTTATGGCGGCCGG 1713 Query 61 GCCCACCGCAGCCCATGGTCAGGGCGCCCAGTTTGAGCTGTCTTTTAGTCA-TTGCGCAG 119 | || ||||||||||| ||||||||||| ||||| |||||||||||||||| ||| ||| Sbjct 1714 GGCCGCCGCAGCCCATCGTCAGGGCGCCAAGTTTCAGCTGTCTTTTAGTCATTTGTTCAG 1773 Query 120 TAGTCCTTCAAGCGGTCAGGGCTGGGTGGTGACGACGGCGGGTTGCAAGGCGGCCGCGAA 179 | ||||| |||| || || | |||||||||||||||||||||||||| Sbjct 1774 TGTTCCTTGAAGC------------GTTTTGGCCACGGCGGGTTGCAAGGCGGCCGCGAA 1821 Query 180 TGAAGGGTCAAACAACGTGGCGGCCGAGTAAGACTTGACCAGACCCAGGCCGGCAAAAAA 239 |||| ||| |||| |||| ||||| || ||||||||||| || ||| ||||||||| Sbjct 1822 TGAATCGTCGAACAGGCTGGCCGCCGAATAGGACTTGACCAGGCCTTGGCTGGCAAAAAA 1881 Query 240 GTCCACGGTCTTTTGCGCCTC 260 |||||||||||||||||| || Sbjct 1882 GTCCACGGTCTTTTGCGCTTC 1902 >seq227057 Length=9500 Score = 253 bits (280), Expect = 3e-65 Identities = 214/262 (82%), Gaps = 1/262 (0%) Strand=Plus/Minus Query 1 CGACGTTGACGCTGGCATCGGCCGGCAATTGCGGGTCAAGCCACAGGTTATGGCGGCCCG 60 |||||||||||||||| ||||||||||| |||||||| ||||| || || |||||||||| Sbjct 1822 CGACGTTGACGCTGGCGTCGGCCGGCAAGTGCGGGTCCAGCCATAGATTGTGGCGGCCCG 1763 Query 61 GCCCACCGCAGCCCATGGTCAGGGCGCCCAGTTTGAGCTGTCTTTTAGTCAT-TGCGCAG 119 |||| ||||| ||||||||||||||||| ||||||||||||| || ||||| | | || Sbjct 1762 GCCCGCCGCAACCCATGGTCAGGGCGCCGAGTTTGAGCTGTCGTTGGGTCATATCAGAAG 1703 Query 120 TAGTCCTTCAAGCGGTCAGGGCTGGGTGGTGACGACGGCGGGTTGCAAGGCGGCCGCGAA 179 ||||| || | ||| |||||||| | ||||||||||||||| | ||||| ||| Sbjct 1702 AGTTCCTTGAAATGTTCACGGCTGGGTCTGGGCGACGGCGGGTTGCAGCGAGGCCGAGAA 1643 Query 180 TGAAGGGTCAAACAACGTGGCGGCCGAGTAAGACTTGACCAGACCCAGGCCGGCAAAAAA 239 ||| || |||| | || || ||||||||||||||||| || |||| ||| ||||| Sbjct 1642 GGAATCATCGAACAGGCTCGCTGCGGAGTAAGACTTGACCAGGCCAAGGCTGGCGAAAAA 1583 Query 240 GTCCACGGTCTTTTGCGCCTCG 261 |||||||||||||||||| ||| Sbjct 1582 GTCCACGGTCTTTTGCGCTTCG 1561 >seq3073622 Length=1748 Score = 248 bits (274), Expect = 1e-63 Identities = 211/261 (81%), Gaps = 13/261 (5%) Strand=Plus/Minus Query 1 CGACGTTGACGCTGGCATCGGCCGGCAATTGCGGGTCAAGCCACAGGTTATGGCGGCCCG 60 |||| |||||||||||||||||||| || | ||||||||||||||||| |||||||| | Sbjct 316 CGACATTGACGCTGGCATCGGCCGGTAACTCGGGGTCAAGCCACAGGTTGTGGCGGCCGG 257 Query 61 GCCCACCGCAGCCCATGGTCAGGGCGCCCAGTTTGAGCTGTCTTTTAGTCATTG-CGCAG 119 | || ||||||||||| ||||||||||| ||||| ||||||||||||||||||| || Sbjct 256 GGCCGCCGCAGCCCATCGTCAGGGCGCCAAGTTTCAGCTGTCTTTTAGTCATTGATTAAG 197 Query 120 TAGTCCTTCAAGCGGTCAGGGCTGGGTGGTGACGACGGCGGGTTGCAAGGCGGCCGCGAA 179 | ||||| |||| || || | |||||||||||||||||||||||||| Sbjct 196 TGTTCCTTGAAGC------------GTTTTGGCCACGGCGGGTTGCAAGGCGGCCGCGAA 149 Query 180 TGAAGGGTCAAACAACGTGGCGGCCGAGTAAGACTTGACCAGACCCAGGCCGGCAAAAAA 239 ||| ||| |||| |||| ||||| || || |||||||| ||| ||| ||||||||| Sbjct 148 TGAGTCGTCGAACAGGCTGGCCGCCGAATAGGATTTGACCAGGCCCTGGCTGGCAAAAAA 89 Query 240 GTCCACGGTCTTTTGCGCCTC 260 |||||||||||||||||| || Sbjct 88 GTCCACGGTCTTTTGCGCTTC 68 >seq3088129 Length=7432 Score = 232 bits (256), Expect = 1e-58 Identities = 211/262 (81%), Gaps = 3/262 (1%) Strand=Plus/Plus Query 1 CGACGTTGACGCTGGCATCGGCCGGCAATTGCGGGTCAAGCCACAGGTTATGGCGGCCCG 60 ||| |||||||||||| ||||| ||||||||||| || ||||||||||| |||||||||| Sbjct 7137 CGATGTTGACGCTGGCGTCGGCAGGCAATTGCGGATCGAGCCACAGGTTGTGGCGGCCCG 7196 Query 61 GCCCACCGCAGCCCATGGTCAGGGCGCCCAGTTTGAGCTGTCTTTTAGTCAT-TGCGCAG 119 | ||||||| ||||||||||| |||||||||||||||||||| | | ||||| | | | Sbjct 7197 GGCCACCGCTGCCCATGGTCAAGGCGCCCAGTTTGAGCTGTCGTGTGGTCATGTCAGAGG 7256 Query 120 TAGTCCTTCAAGCGGTCAGGGCTG-GGTGGTGACGACGGCGGGTTGCAAGGCGGCCGCGA 178 | ||||| | ||||||||| | | ||| ||||||| || |||| ||| || || Sbjct 7257 CAATCCTTGGGGTATTCAGGGCTGTGTTTGTG-CGACGGCCGGCTGCAGGGCCGCGCTGA 7315 Query 179 ATGAAGGGTCAAACAACGTGGCGGCCGAGTAAGACTTGACCAGACCCAGGCCGGCAAAAA 238 |||| ||||| |||| ||||||||| | | || |||||||| ||| ||| ||| |||| Sbjct 7316 ATGAGGGGTCGAACAGGCTGGCGGCCGGGAACGATTTGACCAGGCCCTGGCTGGCGAAAA 7375 Query 239 AGTCCACGGTCTTTTGCGCCTC 260 ||||||||||||| ||||| || Sbjct 7376 AGTCCACGGTCTTCTGCGCTTC 7397 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 713978916570