Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001581.1
Length=660
Score E
Sequences producing significant alignments: (Bits) Value
seq93789 215 2e-53
seq3009440 199 2e-48
seq3084368 183 1e-43
seq2952247 174 6e-41
seq2990096 127 8e-27
seq2824920 114 5e-23
seq370609 109 2e-21
>seq93789
Length=1959
Score = 215 bits (238), Expect = 2e-53
Identities = 296/411 (72%), Gaps = 2/411 (0%)
Strand=Plus/Plus
Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298
||| ||||||||||| ||||||| |||| |||||||| |||||||||||| | || ||
Sbjct 1311 CCATGGCTTGAGCCACAGCCCCATGCCCAGCAACACCACGGCGCCGGCCAGGGTGCTTAA 1370
Query 299 CCCCAACTGCCACCCATCGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCAACAG 358
||||| ||| || || || | || ||| ||||||||||| |||| ||
Sbjct 1371 CCCCAGTTGCAGCCACACGCCTTGAATTGGAAACAGCAGCAGCGCCGCCAGGCCCATCAC 1430
Query 359 CACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGGGCGGTG 418
|| | | || | ||| ||| || |||| ||| ||| ||| | |||| ||
Sbjct 1431 CAGCGCACTGAGCAGCCAGTGCCGTGCCCAGGGCAGCGCGCCTTGCAATGCTTGGCGCTG 1490
Query 419 CATCAGCAACAAGTTCGTCACCACGACGCCACCCAACGCCGCCAAGGCGATCCCCGGCAG 478
|||||||| || | || | ||||| ||| || |||| || || |||| |||
Sbjct 1491 CATCAGCAGCAGGGCGGTGCAGATCACGCCTGCCAGTGCGGCCAGGGGAATACCCGCCAG 1550
Query 479 GCCGATACA-ATAGGGCAGCACCACCAGCAAGGCGGCGTTGACCAGGCTGCCCAGCAGTT 537
||| | ||| | | |||||||| ||||||| | |||||||||||||| ||||| |
Sbjct 1551 GCC-AAACACAAACGGCAGCACGCCCAGCAACAACACATTGACCAGGCTGCCGAGCAGCT 1609
Query 538 CGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCATCGCGT 597
||||| |||||| ||||||| ||||| |||||||||||| || ||||| | ||||
Sbjct 1610 CGCAACGCAGCGGCTGGCGCGTATCGCCAGCGGCATAGGCATAACGCGCGAGTAAGGCGT 1669
Query 598 TCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCA 648
||||||| || |||||||| ||| ||| ||||||||||||||| |||||
Sbjct 1670 TCCAGGCACCGAACACCAGCGGCACGGCAAACCAGGCCAGCAGCAGCGGCA 1720
>seq3009440
Length=724
Score = 199 bits (220), Expect = 2e-48
Identities = 298/416 (72%), Gaps = 8/416 (2%)
Strand=Plus/Plus
Query 241 ACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAACC 300
||||||| ||||| ||||||| |||| ||||| || | ||| |||||| |||| | ||
Sbjct 1 ACGGCTTCAGCCACAGCCCCATGCCCAGCAACATCACCATGCCCGCCAGGGTACTGAGCC 60
Query 301 CCAACTGCCACCCAT-CGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCAACAGC 359
||| |||| | |||| || || | || || || ||| ||||| |||| || |
Sbjct 61 CCAGCTGC-AGCCATACGCCTTGAATTGGAAACAACACCCACGCTGCCACGCCCATCACC 119
Query 360 ACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGGGCGGTGC 419
||| | || | ||| ||| | ||| |||| | |||||| | |||| |||
Sbjct 120 ACCGCACTGAGCAGCCAATGCCGCGCCCACGCCAGGGCGTCGAGCAACCCCTGGCGCTGC 179
Query 420 ATCAGCAACAAGTTCGTCACCACGACGCCACCCAACGCCGCCAAGGCGATCCCCGGCAGG 479
||||||| |||| ||| | || || ||| ||| |||| | || |||| ||||
Sbjct 180 ATCAGCAGCAAGGCCGTGCAGATCACCCCGGCCAGCGCGGCCAGCGGTATACCCGCCAGG 239
Query 480 CCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGCG--TTGACCAGGCTGCCCAGCAGT 536
|| | |||| ||||||| | |||||| || || |||||||||||||| |||| |
Sbjct 240 CCAAACACAA-AGGGCAGGGCGCCCAGCA--GCAGCACATTGACCAGGCTGCCGAGCAAT 296
Query 537 TCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCATCGCG 596
|| ||| |||||| ||||||||||||| || ||||||||||| ||||||| |||
Sbjct 297 TCACAACGCAGCGGCTGGCGCGTGTCGCCAGCCGCGTAGGCATAGCGTGCGAGCAGGGCG 356
Query 597 TTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCAGTGG 652
||||||||||| |||||||| ||| ||| ||||| ||||||| | |||||| ||
Sbjct 357 TTCCAGGCGCCGAACACCAGCGGCACGGCAAACCATGCCAGCAACAACGGCAGCGG 412
>seq3084368
Length=2938
Score = 183 bits (202), Expect = 1e-43
Identities = 301/424 (71%), Gaps = 20/424 (5%)
Strand=Plus/Plus
Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298
||||||||| ||||| ||||||| |||| |||||| | |||||| |||||| | |||||
Sbjct 1780 CCACGGCTTCAGCCACAGCCCCATACCCAGCAACACTATCGCGCCTGCCAGGGTGCTCAA 1839
Query 299 CCCCAACTGC-----CAC-CCATCGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACC 352
|||| ||| ||| || ||| | | || ||| ||||||||||| ||
Sbjct 1840 GCCCAGTTGCAGCCACACGCCTTCGATTCGAAACAA---CAG---CAGCGCCGCCAGCCC 1893
Query 353 CAACAGCACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGG 412
|| |||||| ||| | ||| ||| | ||| ||| | ||||| | |
Sbjct 1894 CATCAGCACGGTGCTGATCAGCCAATGCCGGGCCCACGGCAGGGCGGTGAGCAACGCCTG 1953
Query 413 GCGGTGCATCAGCAACAAGTTCGTCACC-ACGACGCCACCCAACGCCGCCAAGGCGATCC 471
||| |||||||||| || | || || || ||||| ||| |||||||| | || |
Sbjct 1954 GCGTTGCATCAGCAGCA-GCGCGGTACAGACCACGCCCGCCAGCGCCGCCAGCGGAATTC 2012
Query 472 CCGGCAGGCCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGC--GTTGACCAGGCTGC 528
| | || || | |||| | |||||||| |||||| || || ||||||||||||||
Sbjct 2013 CAGCCAAACCAAACACAA-ACGGCAGCACGCCCAGCA--GCAGCACGTTGACCAGGCTGC 2069
Query 529 CCAGCAGTTCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGA 588
| ||||||||||| |||||| | ||||| |||||| ||| ||||| || || ||||
Sbjct 2070 CGAGCAGTTCGCAGCGCAGCGGCTGACGCGTATCGCCGGCGGCGTAGGCGTAACGCGCGA 2129
Query 589 GCATCGCGTTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCA 648
||| |||||||| || || |||||||| ||| ||| ||||| ||||||| || |||||
Sbjct 2130 GCAGGGCGTTCCATGCACCGAACACCAGGGGCACGGCAAACCATGCCAGCAACGGCGGCA 2189
Query 649 GTGG 652
| ||
Sbjct 2190 GCGG 2193
>seq2952247
Length=452
Score = 174 bits (192), Expect = 6e-41
Identities = 293/417 (70%), Gaps = 14/417 (3%)
Strand=Plus/Minus
Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298
||| ||||||||||| ||||||| |||| |||||||| |||||||||||| | || |
Sbjct 448 CCATGGCTTGAGCCACAGCCCCATGCCCAGCAACACCACGGCGCCGGCCAGGGTGCTTAG 389
Query 299 CCCCAACTGCCACCCATCGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCAACAG 358
||||| ||| || || || | || ||| ||||||||||| | || ||
Sbjct 388 CCCCAGTTGCAGCCACACGCCTTGAATTGGAAACAGCAGCAGCGCCGCCAGGCTCATCAC 329
Query 359 CACCCCGCTCAAGCCCCACTGCAATGGCCA--GCCCAG--TTGGCCGAGCAGTTGCGGGC 414
|| | | | ||| ||| | ||| || || ||| || ||| | |||
Sbjct 328 CAGGGCAATGAGCAGCCAGTGCCGCGTCCACGGCAAAGCATTG----AGTAGTGCCTGGC 273
Query 415 GGTGCATCAGCAACAAGTTCGTCACCACGACGCCACCCAACGCCGCCAAGGCGATCCCCG 474
| |||||||||| || || | || || ||| || ||||||| || ||||
Sbjct 272 GTTGCATCAGCAGCAGCGCGGTGCATATCACACCTGCCAGTGCGGCCAAGGGAATACCCG 213
Query 475 GCAGGCCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGCG--TTGACCAGGCTGCCCA 531
|||||| | |||| | |||||||| |||||| || || |||||||||||||| |
Sbjct 212 CCAGGCCAAACACAA-ACGGCAGCACGCCCAGCA--GCAGCACATTGACCAGGCTGCCAA 156
Query 532 GCAGTTCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCA 591
|||| |||||| |||||| ||||||| |||||| ||| |||||||| || || ||||
Sbjct 155 GCAGCTCGCAACGCAGCGGCTGGCGCGTATCGCCGGCGGCGTAGGCATAACGCGCAAGCA 96
Query 592 TCGCGTTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCA 648
|| ||||||||||| |||||||| ||| || ||||||||||||||| |||||
Sbjct 95 AGGCATTCCAGGCGCCGAACACCAGCGGCACCGCAAACCAGGCCAGCAGCAGCGGCA 39
>seq2990096
Length=607
Score = 127 bits (140), Expect = 8e-27
Identities = 106/129 (82%), Gaps = 3/129 (2%)
Strand=Plus/Minus
Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60
||| |||||||||| ||||| | ||| ||| |||||||||| |||||||||||||||||
Sbjct 205 CGAGAAAACCGTGCCGCCGGATACCCTCGACTTGAAGGAGTTTTTCAGCGCCATTGACCA 146
Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCCTGTT---CCAGC 117
|||||| ||||| ||||| || || |||||||| || ||||| ||||||| | ||||
Sbjct 145 GATGCCCCAGGCTGAAAAAGACCTCGCCGCACCGGCTGAGCCTGAGCCTGCTGCGGCAGC 86
Query 118 CGCGCCAGC 126
||||| ||
Sbjct 85 TGCGCCTGC 77
>seq2824920
Length=250
Score = 114 bits (126), Expect = 5e-23
Identities = 90/108 (83%), Gaps = 0/108 (0%)
Strand=Plus/Minus
Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60
|||||||||||||| ||||| | ||| ||||||||||| |||||||||||||| |||||
Sbjct 194 CGAAAAAACCGTGCCGCCGGATACCCTCGACCTGAAGGAATTCTTCAGCGCCATCGACCA 135
Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCC 108
|||||| ||| ||||| || || ||||| ||||| ||||| || ||
Sbjct 134 GATGCCCATGGCTGAAAAAGAACTCGCCGCGCCTGCAGAGCCAGAACC 87
>seq370609
Length=1187
Score = 109 bits (120), Expect = 2e-21
Identities = 102/129 (79%), Gaps = 3/129 (2%)
Strand=Plus/Plus
Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60
||| || ||||||| ||||| | || ||| ||||||||||||| ||||||||||| ||
Sbjct 895 CGAGAAGACCGTGCCGCCGGATACTCTCGACTTGAAGGAGTTCTTTAGCGCCATTGATCA 954
Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCCTGTTCC---AGC 117
|||||| || || ||||| || || || ||||| || ||||| ||||||| | | |||
Sbjct 955 GATGCCCCAAGCTGAAAAAGACCTCGCTGCACCGGCCGAGCCTGAGCCTGCTGCTGTAGC 1014
Query 118 CGCGCCAGC 126
||||||||
Sbjct 1015 TGCGCCAGC 1023
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1942495618899
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