Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001581.1 Length=660 Score E Sequences producing significant alignments: (Bits) Value seq93789 215 2e-53 seq3009440 199 2e-48 seq3084368 183 1e-43 seq2952247 174 6e-41 seq2990096 127 8e-27 seq2824920 114 5e-23 seq370609 109 2e-21 >seq93789 Length=1959 Score = 215 bits (238), Expect = 2e-53 Identities = 296/411 (72%), Gaps = 2/411 (0%) Strand=Plus/Plus Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298 ||| ||||||||||| ||||||| |||| |||||||| |||||||||||| | || || Sbjct 1311 CCATGGCTTGAGCCACAGCCCCATGCCCAGCAACACCACGGCGCCGGCCAGGGTGCTTAA 1370 Query 299 CCCCAACTGCCACCCATCGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCAACAG 358 ||||| ||| || || || | || ||| ||||||||||| |||| || Sbjct 1371 CCCCAGTTGCAGCCACACGCCTTGAATTGGAAACAGCAGCAGCGCCGCCAGGCCCATCAC 1430 Query 359 CACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGGGCGGTG 418 || | | || | ||| ||| || |||| ||| ||| ||| | |||| || Sbjct 1431 CAGCGCACTGAGCAGCCAGTGCCGTGCCCAGGGCAGCGCGCCTTGCAATGCTTGGCGCTG 1490 Query 419 CATCAGCAACAAGTTCGTCACCACGACGCCACCCAACGCCGCCAAGGCGATCCCCGGCAG 478 |||||||| || | || | ||||| ||| || |||| || || |||| ||| Sbjct 1491 CATCAGCAGCAGGGCGGTGCAGATCACGCCTGCCAGTGCGGCCAGGGGAATACCCGCCAG 1550 Query 479 GCCGATACA-ATAGGGCAGCACCACCAGCAAGGCGGCGTTGACCAGGCTGCCCAGCAGTT 537 ||| | ||| | | |||||||| ||||||| | |||||||||||||| ||||| | Sbjct 1551 GCC-AAACACAAACGGCAGCACGCCCAGCAACAACACATTGACCAGGCTGCCGAGCAGCT 1609 Query 538 CGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCATCGCGT 597 ||||| |||||| ||||||| ||||| |||||||||||| || ||||| | |||| Sbjct 1610 CGCAACGCAGCGGCTGGCGCGTATCGCCAGCGGCATAGGCATAACGCGCGAGTAAGGCGT 1669 Query 598 TCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCA 648 ||||||| || |||||||| ||| ||| ||||||||||||||| ||||| Sbjct 1670 TCCAGGCACCGAACACCAGCGGCACGGCAAACCAGGCCAGCAGCAGCGGCA 1720 >seq3009440 Length=724 Score = 199 bits (220), Expect = 2e-48 Identities = 298/416 (72%), Gaps = 8/416 (2%) Strand=Plus/Plus Query 241 ACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAACC 300 ||||||| ||||| ||||||| |||| ||||| || | ||| |||||| |||| | || Sbjct 1 ACGGCTTCAGCCACAGCCCCATGCCCAGCAACATCACCATGCCCGCCAGGGTACTGAGCC 60 Query 301 CCAACTGCCACCCAT-CGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCAACAGC 359 ||| |||| | |||| || || | || || || ||| ||||| |||| || | Sbjct 61 CCAGCTGC-AGCCATACGCCTTGAATTGGAAACAACACCCACGCTGCCACGCCCATCACC 119 Query 360 ACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGGGCGGTGC 419 ||| | || | ||| ||| | ||| |||| | |||||| | |||| ||| Sbjct 120 ACCGCACTGAGCAGCCAATGCCGCGCCCACGCCAGGGCGTCGAGCAACCCCTGGCGCTGC 179 Query 420 ATCAGCAACAAGTTCGTCACCACGACGCCACCCAACGCCGCCAAGGCGATCCCCGGCAGG 479 ||||||| |||| ||| | || || ||| ||| |||| | || |||| |||| Sbjct 180 ATCAGCAGCAAGGCCGTGCAGATCACCCCGGCCAGCGCGGCCAGCGGTATACCCGCCAGG 239 Query 480 CCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGCG--TTGACCAGGCTGCCCAGCAGT 536 || | |||| ||||||| | |||||| || || |||||||||||||| |||| | Sbjct 240 CCAAACACAA-AGGGCAGGGCGCCCAGCA--GCAGCACATTGACCAGGCTGCCGAGCAAT 296 Query 537 TCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCATCGCG 596 || ||| |||||| ||||||||||||| || ||||||||||| ||||||| ||| Sbjct 297 TCACAACGCAGCGGCTGGCGCGTGTCGCCAGCCGCGTAGGCATAGCGTGCGAGCAGGGCG 356 Query 597 TTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCAGTGG 652 ||||||||||| |||||||| ||| ||| ||||| ||||||| | |||||| || Sbjct 357 TTCCAGGCGCCGAACACCAGCGGCACGGCAAACCATGCCAGCAACAACGGCAGCGG 412 >seq3084368 Length=2938 Score = 183 bits (202), Expect = 1e-43 Identities = 301/424 (71%), Gaps = 20/424 (5%) Strand=Plus/Plus Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298 ||||||||| ||||| ||||||| |||| |||||| | |||||| |||||| | ||||| Sbjct 1780 CCACGGCTTCAGCCACAGCCCCATACCCAGCAACACTATCGCGCCTGCCAGGGTGCTCAA 1839 Query 299 CCCCAACTGC-----CAC-CCATCGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACC 352 |||| ||| ||| || ||| | | || ||| ||||||||||| || Sbjct 1840 GCCCAGTTGCAGCCACACGCCTTCGATTCGAAACAA---CAG---CAGCGCCGCCAGCCC 1893 Query 353 CAACAGCACCCCGCTCAAGCCCCACTGCAATGGCCAGCCCAGTTGGCCGAGCAGTTGCGG 412 || |||||| ||| | ||| ||| | ||| ||| | ||||| | | Sbjct 1894 CATCAGCACGGTGCTGATCAGCCAATGCCGGGCCCACGGCAGGGCGGTGAGCAACGCCTG 1953 Query 413 GCGGTGCATCAGCAACAAGTTCGTCACC-ACGACGCCACCCAACGCCGCCAAGGCGATCC 471 ||| |||||||||| || | || || || ||||| ||| |||||||| | || | Sbjct 1954 GCGTTGCATCAGCAGCA-GCGCGGTACAGACCACGCCCGCCAGCGCCGCCAGCGGAATTC 2012 Query 472 CCGGCAGGCCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGC--GTTGACCAGGCTGC 528 | | || || | |||| | |||||||| |||||| || || |||||||||||||| Sbjct 2013 CAGCCAAACCAAACACAA-ACGGCAGCACGCCCAGCA--GCAGCACGTTGACCAGGCTGC 2069 Query 529 CCAGCAGTTCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGA 588 | ||||||||||| |||||| | ||||| |||||| ||| ||||| || || |||| Sbjct 2070 CGAGCAGTTCGCAGCGCAGCGGCTGACGCGTATCGCCGGCGGCGTAGGCGTAACGCGCGA 2129 Query 589 GCATCGCGTTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCA 648 ||| |||||||| || || |||||||| ||| ||| ||||| ||||||| || ||||| Sbjct 2130 GCAGGGCGTTCCATGCACCGAACACCAGGGGCACGGCAAACCATGCCAGCAACGGCGGCA 2189 Query 649 GTGG 652 | || Sbjct 2190 GCGG 2193 >seq2952247 Length=452 Score = 174 bits (192), Expect = 6e-41 Identities = 293/417 (70%), Gaps = 14/417 (3%) Strand=Plus/Minus Query 239 CCACGGCTTGAGCCAAAGCCCCAACCCCACCAACACCAGCGCGCCGGCCAGGCTACTCAA 298 ||| ||||||||||| ||||||| |||| |||||||| |||||||||||| | || | Sbjct 448 CCATGGCTTGAGCCACAGCCCCATGCCCAGCAACACCACGGCGCCGGCCAGGGTGCTTAG 389 Query 299 CCCCAACTGCCACCCATCGTTGTGCAAGGGGTGCAGGGCCAGCGCCGCCACACCCAACAG 358 ||||| ||| || || || | || ||| ||||||||||| | || || Sbjct 388 CCCCAGTTGCAGCCACACGCCTTGAATTGGAAACAGCAGCAGCGCCGCCAGGCTCATCAC 329 Query 359 CACCCCGCTCAAGCCCCACTGCAATGGCCA--GCCCAG--TTGGCCGAGCAGTTGCGGGC 414 || | | | ||| ||| | ||| || || ||| || ||| | ||| Sbjct 328 CAGGGCAATGAGCAGCCAGTGCCGCGTCCACGGCAAAGCATTG----AGTAGTGCCTGGC 273 Query 415 GGTGCATCAGCAACAAGTTCGTCACCACGACGCCACCCAACGCCGCCAAGGCGATCCCCG 474 | |||||||||| || || | || || ||| || ||||||| || |||| Sbjct 272 GTTGCATCAGCAGCAGCGCGGTGCATATCACACCTGCCAGTGCGGCCAAGGGAATACCCG 213 Query 475 GCAGGCCGAT-ACAATAGGGCAGCACCACCAGCAAGGCGGCG--TTGACCAGGCTGCCCA 531 |||||| | |||| | |||||||| |||||| || || |||||||||||||| | Sbjct 212 CCAGGCCAAACACAA-ACGGCAGCACGCCCAGCA--GCAGCACATTGACCAGGCTGCCAA 156 Query 532 GCAGTTCGCAATTGAGCGGCAGGCGCGTGTCGCCGCTGGCATAGGCATAGCGAGCGAGCA 591 |||| |||||| |||||| ||||||| |||||| ||| |||||||| || || |||| Sbjct 155 GCAGCTCGCAACGCAGCGGCTGGCGCGTATCGCCGGCGGCGTAGGCATAACGCGCAAGCA 96 Query 592 TCGCGTTCCAGGCGCCAAACACCAGAGGCGTGGCGAACCAGGCCAGCAGCGCCGGCA 648 || ||||||||||| |||||||| ||| || ||||||||||||||| ||||| Sbjct 95 AGGCATTCCAGGCGCCGAACACCAGCGGCACCGCAAACCAGGCCAGCAGCAGCGGCA 39 >seq2990096 Length=607 Score = 127 bits (140), Expect = 8e-27 Identities = 106/129 (82%), Gaps = 3/129 (2%) Strand=Plus/Minus Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60 ||| |||||||||| ||||| | ||| ||| |||||||||| ||||||||||||||||| Sbjct 205 CGAGAAAACCGTGCCGCCGGATACCCTCGACTTGAAGGAGTTTTTCAGCGCCATTGACCA 146 Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCCTGTT---CCAGC 117 |||||| ||||| ||||| || || |||||||| || ||||| ||||||| | |||| Sbjct 145 GATGCCCCAGGCTGAAAAAGACCTCGCCGCACCGGCTGAGCCTGAGCCTGCTGCGGCAGC 86 Query 118 CGCGCCAGC 126 ||||| || Sbjct 85 TGCGCCTGC 77 >seq2824920 Length=250 Score = 114 bits (126), Expect = 5e-23 Identities = 90/108 (83%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60 |||||||||||||| ||||| | ||| ||||||||||| |||||||||||||| ||||| Sbjct 194 CGAAAAAACCGTGCCGCCGGATACCCTCGACCTGAAGGAATTCTTCAGCGCCATCGACCA 135 Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCC 108 |||||| ||| ||||| || || ||||| ||||| ||||| || || Sbjct 134 GATGCCCATGGCTGAAAAAGAACTCGCCGCGCCTGCAGAGCCAGAACC 87 >seq370609 Length=1187 Score = 109 bits (120), Expect = 2e-21 Identities = 102/129 (79%), Gaps = 3/129 (2%) Strand=Plus/Plus Query 1 CGAAAAAACCGTGCAACCGGACAGCCTTGACCTGAAGGAGTTCTTCAGCGCCATTGACCA 60 ||| || ||||||| ||||| | || ||| ||||||||||||| ||||||||||| || Sbjct 895 CGAGAAGACCGTGCCGCCGGATACTCTCGACTTGAAGGAGTTCTTTAGCGCCATTGATCA 954 Query 61 GATGCCTCAGGCGGAAAAGGAGCTTGCCGCACCTGCGGAGCCGGAGCCTGTTCC---AGC 117 |||||| || || ||||| || || || ||||| || ||||| ||||||| | | ||| Sbjct 955 GATGCCCCAAGCTGAAAAAGACCTCGCTGCACCGGCCGAGCCTGAGCCTGCTGCTGTAGC 1014 Query 118 CGCGCCAGC 126 |||||||| Sbjct 1015 TGCGCCAGC 1023 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1942495618899