Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001583.1 Length=657 Score E Sequences producing significant alignments: (Bits) Value seq3086847 268 4e-69 seq355878 98.7 4e-18 >seq3086847 Length=4338 Score = 268 bits (296), Expect = 4e-69 Identities = 318/431 (74%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 53 ATGGTCAAAGGGATATGGCAAGCGGTTGAGTTTGTTCGCTCCTTCGGTATCAAGCACTTG 112 ||||| || ||||| |||| | | ||| ||| |||||||||| ||||||||| || Sbjct 1482 ATGGTGAAGGGGATTTGGCGGGGGCTTGGCTTTATTCGCTCCTTTAACATCAAGCACCTG 1423 Query 113 GAGCCGACGGTGCTGCCGGATGAGGTTGAGCAGGTAATCCTTGAGCAGATTGCCAGTGAA 172 |||||||||| | ||| ||||||| | || | ||||||||||||||||||||| Sbjct 1422 GAGCCGACGGCGTTGCTGGATGAGATCCAGGCCCACACCCTTGAGCAGATTGCCAGTGAT 1363 Query 173 CCTGAGGCTTGGCTGGCAATTGTCCCCACGTCCCACAGTGATGCCCAGGCATTGCTTTAC 232 || ||| |||||||| |||||| |||| || ||||| || ||| ||||||||| ||| Sbjct 1362 CCGCAGGGCTGGCTGGCGATTGTCGCCACCTCTCACAGCGACGCCAGGGCATTGCTCTAC 1303 Query 233 GACGCCCCGGTGCTGGAGTTGAAACGTCAGACCCAGGCAGCCAGCCATTCCGGCAAAGCG 292 ||||| ||||| ||| || | || | || || || ||||||||||| ||||| ||| Sbjct 1302 CACGCCAGCGTGCTTGAGCTGCAGCGCCGCACTCAAGCCGCCAGCCATTCTGGCAAGGCG 1243 Query 293 CTGGATGAGTATCGCACCCGTCGGCTGGGCGAGCAGGGCGAGACACGCAGGCGCCGGTTG 352 ||| | | || ||| | || || || || ||||| |||||||||| | ||| | || Sbjct 1242 CTGCAGGCCTACCGCGCGCGCCGCCTTGGTGAGCAAAGCGAGACACGTACGCGGGCGCTG 1183 Query 353 ATCGCTTTTTTCTCTCCGTTATTCGGGATGTTCAATGATGCCTACGAGTTGCTGCTTGTG 412 | | ||||||| ||| | | |||||| || ||| | | | || |||||||| || Sbjct 1182 GTGGGGTTTTTCTGCCCGATGTACGGGATCTTTAATCAATTCCATGAACTGCTGCTTATG 1123 Query 413 GCGCGGCGCTTTCATCGCTATGGGGACCCTCATGATGCCGTTGACGTGGGTTTTATGAGT 472 |||||||| | ||| |||| ||| ||| |||| || || || ||||| |||||||| Sbjct 1122 GCGCGGCGTTATCACCGCTTTGGCGACGCTCACACGGCGGTCGATGTGGGCTTTATGAGC 1063 Query 473 GCGTTTATGGC 483 |||||| |||| Sbjct 1062 GCGTTTCTGGC 1052 >seq355878 Length=1118 Score = 98.7 bits (108), Expect = 4e-18 Identities = 98/127 (77%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 397 CGAGTTGCTGCTTGTGGCGCGGCGCTTTCATCGCTATGGGGACCCTCATGATGCCGTTGA 456 |||| |||||||| |||||||||||| ||| |||| ||| ||| | || | ||| || || Sbjct 973 CGAGCTGCTGCTTATGGCGCGGCGCTATCACCGCTTTGGCGACGCCCACGCTGCGGTCGA 914 Query 457 CGTGGGTTTTATGAGTGCGTTTATGGCGGCTGACCTGCTGACAAACTTTATACCGGGGCC 516 |||||||||||||| ||||| ||||| || || || |||||||| || || || Sbjct 913 TGTGGGTTTTATGAGCACGTTTCTGGCGATCGATGTGTTGCTTAACTTTATTCCCGGCCC 854 Query 517 CAAGGGG 523 |||| || Sbjct 853 CAAGAGG 847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1933201381488