Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001589.1 Length=431 Score E Sequences producing significant alignments: (Bits) Value seq343592 511 1e-142 seq3087287 475 9e-132 seq3073946 403 4e-110 seq2921541 347 3e-93 seq199616 273 5e-71 seq2328332 187 6e-45 seq2155183 147 5e-33 seq1490342 118 3e-24 seq2839943 105 2e-20 seq2877829 102 2e-19 >seq343592 Length=2579 Score = 511 bits (566), Expect = 1e-142 Identities = 367/431 (85%), Gaps = 0/431 (0%) Strand=Plus/Minus Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60 ||| ||||||||||| |||||||||||||| || |||| | ||||||||||||||||| Sbjct 1908 CGACAGCCATATCAAAAGCCTGCGCAGCAAACTGCGGAGCATTGCGGCGGATGCCGAGCC 1849 Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120 ||||||||||||||||||||| |||||||||||||| Sbjct 1848 GATCCAGACCCATCGCGGCCTCGGCTACAGCTACAGCCCGAGCCACAGCTGATGCGCCTG 1789 Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180 ||||||||||| ||||||||||||||||||||||||||||| || || ||||| |||||| Sbjct 1788 GGGCTGCGGATCTTCCTGGTGTATGCGCTGTTTATCGGCCTCACGGGTTACTTTGTGCTC 1729 Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240 ||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| Sbjct 1728 AACACCGTGATGAAGGAAATCCGACCCGGCGTGCGCCAGTCCACCGAAGAAACCTTGGTG 1669 Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAACGGCACCCTCGGC 300 ||||| ||||||||||||||||||||||||||| ||||| ||||| | |||||||||| Sbjct 1668 GACACGGCCAACCTGCTGGCTGAAATCCTGCGTCTTGACGTAAAAAATGCCACCCTCGGC 1609 Query 301 CAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAGCCGGGAGCGACGATC 360 || ||||| ||||| || ||||||||||| || |||| ||||||||| || ||||| ||| Sbjct 1608 CAAAGCCACTGGCCTGAGTTGCTCAAGGCCTACGGCAATCGCCAGCCCGGCGCGACCATC 1549 Query 361 TGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGACGCCAAGGGCAGG 420 ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |||| Sbjct 1548 TGGGGCCTGCCGAAAAACCAGGTCAACCACCGCATCTATGTGACCGACGCCAACGGCATC 1489 Query 421 GTATTGCTCGA 431 || |||||||| Sbjct 1488 GTGTTGCTCGA 1478 >seq3087287 Length=4921 Score = 475 bits (526), Expect = 9e-132 Identities = 359/431 (83%), Gaps = 0/431 (0%) Strand=Plus/Plus Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60 ||| || |||||||| ||||||||||||||| | | | |||||||| || || ||||| Sbjct 1613 CGACAGTCATATCAAAAGCCTGCGCAGCAAGTTGCGCAACGTGGCGGCCGAGGCTGAGCC 1672 Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120 ||||||||||||||||||||| |||||||||||||| Sbjct 1673 GATCCAGACCCATCGCGGCCTGGGTTACAGCTACAACCCGAGCCACAGCTGATGCGCCTG 1732 Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180 ||||||||||||||||||||||| |||||||| ||||| || |||||||| || |||||| Sbjct 1733 GGGCTGCGGATTTTCCTGGTGTACGCGCTGTTCATCGGGCTCACCGGCTATTTTGTGCTC 1792 Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240 | ||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||| Sbjct 1793 AGCACTGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAGTCCACCGAAGAAACCCTGGTG 1852 Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAACGGCACCCTCGGC 300 ||||||||||||||||| || ||||||||||| || || || ||||||||||||||| Sbjct 1853 GACACCGCCAACCTGCTCGCCGAAATCCTGCGCAATGATGTGAAGAACGGCACCCTCGGC 1912 Query 301 CAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAGCCGGGAGCGACGATC 360 |||||||||||||| || |||||||||||||| |||| |||||| || || ||| |||| Sbjct 1913 CAGAGCCATTGGCCAGAGTTGCTCAAGGCTTACGGCAATCGCCAACCCGGCGCGGTGATC 1972 Query 361 TGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGACGCCAAGGGCAGG 420 ||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||| | Sbjct 1973 TGGGGCCTGCCGAAAAACCAGGTCAACCACCGCATCTACGTGACCGATGCCCACGGCACG 2032 Query 421 GTATTGCTCGA 431 || |||||||| Sbjct 2033 GTGTTGCTCGA 2043 >seq3073946 Length=1762 Score = 403 bits (446), Expect = 4e-110 Identities = 285/326 (87%), Gaps = 0/326 (0%) Strand=Plus/Plus Query 106 CAGCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACC 165 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||| Sbjct 8 CAGCTGATGCGCCTGGGGCTGCGGATCTTCCTGGTGTATGCGCTGTTTATCGGCCTTACC 67 Query 166 GGCTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACC 225 || ||||| ||||||||||| |||||||||||||||||||| ||||||||||| |||||| Sbjct 68 GGTTACTTTGTGCTCAACACGGTGATGAAGGAAATCCGCCCTGGCGTGCGCCAGTCCACC 127 Query 226 GAAGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAA 285 |||||||| |||||||||| ||||| ||||||| || |||||| | ||||| || Sbjct 128 GAAGAAACCCTGGTGGACACGGCCAATTTGCTGGCCGAGATCCTGAGGTTGGACGTAAAG 187 Query 286 AACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAG 345 ||||||||||||||||| ||||| |||||||| |||||||| || ||||||||||||||| Sbjct 188 AACGGCACCCTCGGCCAAAGCCACTGGCCCGAGTTGCTCAAAGCCTATGGCAGTCGCCAG 247 Query 346 CCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACC 405 || || ||||| || ||||||||||||||||| ||||| ||||| ||||| || |||||| Sbjct 248 CCTGGCGCGACCATTTGGGGCCTGCCGAAAAATCAGGTTAACCACCGCATTTATGTGACC 307 Query 406 GACGCCAAGGGCAGGGTATTGCTCGA 431 |||||||| |||| || ||||||| Sbjct 308 GACGCCAACGGCATCGTGCTGCTCGA 333 >seq2921541 Length=371 Score = 347 bits (384), Expect = 3e-93 Identities = 279/345 (81%), Gaps = 0/345 (0%) Strand=Plus/Minus Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60 ||| ||||||||||| |||||||||||||| || | || ||||| || || |||||||| Sbjct 345 CGACAGCCATATCAAAAGCCTGCGCAGCAAACTGCGAAGCGTGGCCGCCGACGCCGAGCC 286 Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120 |||||||||||| || ||||| ||||||||||||| Sbjct 285 GATCCAGACCCACCGTGGCCTGGGTTACAGCTACAGCCCGAGCCATAGCTGATGCGCCTG 226 Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180 |||||||||||||| |||||||| |||||||||||||||||||||||||| || |||||| Sbjct 225 GGGCTGCGGATTTTTCTGGTGTACGCGCTGTTTATCGGCCTGACCGGCTATTTTGTGCTC 166 Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240 |||||||||||||| || |||||||| ||||||||||| ||||| |||||||| ||||| Sbjct 165 AACACCGTGATGAAAGAGATCCGCCCTGGCGTGCGCCAGTCCACTGAAGAAACCCTGGTG 106 Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAACGGCACCCTCGGC 300 |||||||||||||||||||| || |||||||| || || || ||||||||||||||| Sbjct 105 GACACCGCCAACCTGCTGGCCGAGATCCTGCGGCTGGATGTGAAGAACGGCACCCTCGGC 46 Query 301 CAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAG 345 || ||||| ||||| || |||||||||| || ||||| |||||| Sbjct 45 CAAAGCCACTGGCCGGAGCTGCTCAAGGCGTACGGCAGCCGCCAG 1 >seq199616 Length=1321 Score = 273 bits (302), Expect = 5e-71 Identities = 219/272 (81%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60 ||| ||||||||||| |||||||||||||| || | | ||| | || | |||||||| Sbjct 812 CGACAGCCATATCAAAAGCCTGCGCAGCAACCTGCGAGGCGTGCCCGCCGCCGCCGAGCC 871 Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120 |||||||||||| || ||||| |||| |||||||| Sbjct 872 GATCCAGACCCACCGTGGCCTGGGTTACAGCTACAGCCCGAGCCATAGCTAATGCGCCTG 931 Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180 |||||||||||||| |||||||| |||||||||||||||||||||||||| |||||||| Sbjct 932 GGGCTGCGGATTTTTCTGGTGTACGCGCTGTTTATCGGCCTGACCGGCTATTTCGTGCTT 991 Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240 |||||||||||||| || |||||||||||||||||||| |||||||||||||| ||||| Sbjct 992 AACACCGTGATGAAAGAGATCCGCCCCGGCGTGCGCCAGTCCACCGAAGAAACCCTGGTG 1051 Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCG 272 ||||| |||||||||||||| ||||||||||| Sbjct 1052 GACACGGCCAACCTGCTGGCCGAAATCCTGCG 1083 Score = 178 bits (196), Expect = 3e-42 Identities = 121/136 (89%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 283 AAAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGC 342 || ||||||||||||||||| ||||| ||||| || |||||||||| || ||||| ||| Sbjct 1181 AAGAACGGCACCCTCGGCCAAAGCCACTGGCCGGAGCTGCTCAAGGCCTACGGCAGCCGC 1240 Query 343 CAGCCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTG 402 |||||||| ||||| || ||||||||||||||||||||||||||||| || ||||||||| Sbjct 1241 CAGCCGGGCGCGACCATTTGGGGCCTGCCGAAAAACCAGGTCAACCACCGTATCTACGTG 1300 Query 403 ACCGACGCCAAGGGCA 418 || ||||||||||||| Sbjct 1301 ACGGACGCCAAGGGCA 1316 >seq2328332 Length=141 Score = 187 bits (206), Expect = 6e-45 Identities = 123/136 (90%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 283 AAAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGC 342 || ||||||||||||||||| ||||| ||||| || |||||||||| || ||||| ||| Sbjct 141 AAGAACGGCACCCTCGGCCAAAGCCACTGGCCGGAGCTGCTCAAGGCGTACGGCAGCCGC 82 Query 343 CAGCCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTG 402 |||||||| |||||||||||||||||||||||||||||||||||||| || ||||||||| Sbjct 81 CAGCCGGGCGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCACCGTATCTACGTG 22 Query 403 ACCGACGCCAAGGGCA 418 || ||||||||||||| Sbjct 21 ACGGACGCCAAGGGCA 6 >seq2155183 Length=127 Score = 147 bits (162), Expect = 5e-33 Identities = 108/126 (86%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 220 TCCACCGAAGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGAC 279 |||||||||||||| |||||||||| |||||||||||||| ||||||||||| ||| Sbjct 126 TCCACCGAAGAAACCCTGGTGGACACGGCCAACCTGCTGGCCGAAATCCTGCGGCTGGAC 67 Query 280 GTTAAAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGT 339 || || ||||||||||||||||| ||||| ||||| || |||||||||| || ||||| Sbjct 66 GTAAAGAACGGCACCCTCGGCCAAAGCCACTGGCCGGAGCTGCTCAAGGCGTACGGCAGC 7 Query 340 CGCCAG 345 |||||| Sbjct 6 CGCCAG 1 >seq1490342 Length=124 Score = 118 bits (130), Expect = 3e-24 Identities = 92/118 (78%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 44 GCGGCGGATGCCGAGCCGATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNN 103 |||||||||||||||||||||||||||||||||||||| Sbjct 7 GCGGCGGATGCCGAGCCGATCCAGACCCATCGCGGCCTCGGCTACAGCTACAGCCCGAGC 66 Query 104 NNCAGCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCT 161 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 67 CACAGCTGATGCGCCTGGGGCTGCGGATCTTCCTGGTGTATGCGCTGTTTATCGGCCT 124 >seq2839943 Length=261 Score = 105 bits (116), Expect = 2e-20 Identities = 72/81 (89%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60 ||| ||||||||||| |||||||||||||| || | || | ||||||||||||||||| Sbjct 100 CGACAGCCATATCAAAAGCCTGCGCAGCAAACTGCGAAGCATTGCGGCGGATGCCGAGCC 41 Query 61 GATCCAGACCCATCGCGGCCT 81 ||||||||||||||||||||| Sbjct 40 GATCCAGACCCATCGCGGCCT 20 >seq2877829 Length=299 Score = 102 bits (112), Expect = 2e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 361 TGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGACGCCAAGGGCAGG 420 ||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||| Sbjct 1 TGGGGCCTGCCGAAAAACCAGGTCAACCACCGTATCTACGTGACGGACGCCAAGGGCATT 60 Query 421 GTATTGCTCGA 431 || |||||||| Sbjct 61 GTGTTGCTCGA 71 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1237365891552