Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001589.1
Length=431
Score E
Sequences producing significant alignments: (Bits) Value
seq343592 511 1e-142
seq3087287 475 9e-132
seq3073946 403 4e-110
seq2921541 347 3e-93
seq199616 273 5e-71
seq2328332 187 6e-45
seq2155183 147 5e-33
seq1490342 118 3e-24
seq2839943 105 2e-20
seq2877829 102 2e-19
>seq343592
Length=2579
Score = 511 bits (566), Expect = 1e-142
Identities = 367/431 (85%), Gaps = 0/431 (0%)
Strand=Plus/Minus
Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60
||| ||||||||||| |||||||||||||| || |||| | |||||||||||||||||
Sbjct 1908 CGACAGCCATATCAAAAGCCTGCGCAGCAAACTGCGGAGCATTGCGGCGGATGCCGAGCC 1849
Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120
||||||||||||||||||||| ||||||||||||||
Sbjct 1848 GATCCAGACCCATCGCGGCCTCGGCTACAGCTACAGCCCGAGCCACAGCTGATGCGCCTG 1789
Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180
||||||||||| ||||||||||||||||||||||||||||| || || ||||| ||||||
Sbjct 1788 GGGCTGCGGATCTTCCTGGTGTATGCGCTGTTTATCGGCCTCACGGGTTACTTTGTGCTC 1729
Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 1728 AACACCGTGATGAAGGAAATCCGACCCGGCGTGCGCCAGTCCACCGAAGAAACCTTGGTG 1669
Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAACGGCACCCTCGGC 300
||||| ||||||||||||||||||||||||||| ||||| ||||| | ||||||||||
Sbjct 1668 GACACGGCCAACCTGCTGGCTGAAATCCTGCGTCTTGACGTAAAAAATGCCACCCTCGGC 1609
Query 301 CAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAGCCGGGAGCGACGATC 360
|| ||||| ||||| || ||||||||||| || |||| ||||||||| || ||||| |||
Sbjct 1608 CAAAGCCACTGGCCTGAGTTGCTCAAGGCCTACGGCAATCGCCAGCCCGGCGCGACCATC 1549
Query 361 TGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGACGCCAAGGGCAGG 420
||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||||
Sbjct 1548 TGGGGCCTGCCGAAAAACCAGGTCAACCACCGCATCTATGTGACCGACGCCAACGGCATC 1489
Query 421 GTATTGCTCGA 431
|| ||||||||
Sbjct 1488 GTGTTGCTCGA 1478
>seq3087287
Length=4921
Score = 475 bits (526), Expect = 9e-132
Identities = 359/431 (83%), Gaps = 0/431 (0%)
Strand=Plus/Plus
Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60
||| || |||||||| ||||||||||||||| | | | |||||||| || || |||||
Sbjct 1613 CGACAGTCATATCAAAAGCCTGCGCAGCAAGTTGCGCAACGTGGCGGCCGAGGCTGAGCC 1672
Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120
||||||||||||||||||||| ||||||||||||||
Sbjct 1673 GATCCAGACCCATCGCGGCCTGGGTTACAGCTACAACCCGAGCCACAGCTGATGCGCCTG 1732
Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180
||||||||||||||||||||||| |||||||| ||||| || |||||||| || ||||||
Sbjct 1733 GGGCTGCGGATTTTCCTGGTGTACGCGCTGTTCATCGGGCTCACCGGCTATTTTGTGCTC 1792
Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240
| ||| |||||||||||||||||||||||||||||||| |||||||||||||| |||||
Sbjct 1793 AGCACTGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAGTCCACCGAAGAAACCCTGGTG 1852
Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAACGGCACCCTCGGC 300
||||||||||||||||| || ||||||||||| || || || |||||||||||||||
Sbjct 1853 GACACCGCCAACCTGCTCGCCGAAATCCTGCGCAATGATGTGAAGAACGGCACCCTCGGC 1912
Query 301 CAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAGCCGGGAGCGACGATC 360
|||||||||||||| || |||||||||||||| |||| |||||| || || ||| ||||
Sbjct 1913 CAGAGCCATTGGCCAGAGTTGCTCAAGGCTTACGGCAATCGCCAACCCGGCGCGGTGATC 1972
Query 361 TGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGACGCCAAGGGCAGG 420
||||||||||||||||||||||||||||| ||||||||||||||||| ||| | |||| |
Sbjct 1973 TGGGGCCTGCCGAAAAACCAGGTCAACCACCGCATCTACGTGACCGATGCCCACGGCACG 2032
Query 421 GTATTGCTCGA 431
|| ||||||||
Sbjct 2033 GTGTTGCTCGA 2043
>seq3073946
Length=1762
Score = 403 bits (446), Expect = 4e-110
Identities = 285/326 (87%), Gaps = 0/326 (0%)
Strand=Plus/Plus
Query 106 CAGCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACC 165
|||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 8 CAGCTGATGCGCCTGGGGCTGCGGATCTTCCTGGTGTATGCGCTGTTTATCGGCCTTACC 67
Query 166 GGCTACTTCGTGCTCAACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACC 225
|| ||||| ||||||||||| |||||||||||||||||||| ||||||||||| ||||||
Sbjct 68 GGTTACTTTGTGCTCAACACGGTGATGAAGGAAATCCGCCCTGGCGTGCGCCAGTCCACC 127
Query 226 GAAGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAA 285
|||||||| |||||||||| ||||| ||||||| || |||||| | ||||| ||
Sbjct 128 GAAGAAACCCTGGTGGACACGGCCAATTTGCTGGCCGAGATCCTGAGGTTGGACGTAAAG 187
Query 286 AACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAG 345
||||||||||||||||| ||||| |||||||| |||||||| || |||||||||||||||
Sbjct 188 AACGGCACCCTCGGCCAAAGCCACTGGCCCGAGTTGCTCAAAGCCTATGGCAGTCGCCAG 247
Query 346 CCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACC 405
|| || ||||| || ||||||||||||||||| ||||| ||||| ||||| || ||||||
Sbjct 248 CCTGGCGCGACCATTTGGGGCCTGCCGAAAAATCAGGTTAACCACCGCATTTATGTGACC 307
Query 406 GACGCCAAGGGCAGGGTATTGCTCGA 431
|||||||| |||| || |||||||
Sbjct 308 GACGCCAACGGCATCGTGCTGCTCGA 333
>seq2921541
Length=371
Score = 347 bits (384), Expect = 3e-93
Identities = 279/345 (81%), Gaps = 0/345 (0%)
Strand=Plus/Minus
Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60
||| ||||||||||| |||||||||||||| || | || ||||| || || ||||||||
Sbjct 345 CGACAGCCATATCAAAAGCCTGCGCAGCAAACTGCGAAGCGTGGCCGCCGACGCCGAGCC 286
Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120
|||||||||||| || ||||| |||||||||||||
Sbjct 285 GATCCAGACCCACCGTGGCCTGGGTTACAGCTACAGCCCGAGCCATAGCTGATGCGCCTG 226
Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180
|||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||
Sbjct 225 GGGCTGCGGATTTTTCTGGTGTACGCGCTGTTTATCGGCCTGACCGGCTATTTTGTGCTC 166
Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240
|||||||||||||| || |||||||| ||||||||||| ||||| |||||||| |||||
Sbjct 165 AACACCGTGATGAAAGAGATCCGCCCTGGCGTGCGCCAGTCCACTGAAGAAACCCTGGTG 106
Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGACGTTAAAAACGGCACCCTCGGC 300
|||||||||||||||||||| || |||||||| || || || |||||||||||||||
Sbjct 105 GACACCGCCAACCTGCTGGCCGAGATCCTGCGGCTGGATGTGAAGAACGGCACCCTCGGC 46
Query 301 CAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGCCAG 345
|| ||||| ||||| || |||||||||| || ||||| ||||||
Sbjct 45 CAAAGCCACTGGCCGGAGCTGCTCAAGGCGTACGGCAGCCGCCAG 1
>seq199616
Length=1321
Score = 273 bits (302), Expect = 5e-71
Identities = 219/272 (81%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60
||| ||||||||||| |||||||||||||| || | | ||| | || | ||||||||
Sbjct 812 CGACAGCCATATCAAAAGCCTGCGCAGCAACCTGCGAGGCGTGCCCGCCGCCGCCGAGCC 871
Query 61 GATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNNNNCAGCTGATGCGCCTT 120
|||||||||||| || ||||| |||| ||||||||
Sbjct 872 GATCCAGACCCACCGTGGCCTGGGTTACAGCTACAGCCCGAGCCATAGCTAATGCGCCTG 931
Query 121 GGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCTGACCGGCTACTTCGTGCTC 180
|||||||||||||| |||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 932 GGGCTGCGGATTTTTCTGGTGTACGCGCTGTTTATCGGCCTGACCGGCTATTTCGTGCTT 991
Query 181 AACACCGTGATGAAGGAAATCCGCCCCGGCGTGCGCCAATCCACCGAAGAAACATTGGTG 240
|||||||||||||| || |||||||||||||||||||| |||||||||||||| |||||
Sbjct 992 AACACCGTGATGAAAGAGATCCGCCCCGGCGTGCGCCAGTCCACCGAAGAAACCCTGGTG 1051
Query 241 GACACCGCCAACCTGCTGGCTGAAATCCTGCG 272
||||| |||||||||||||| |||||||||||
Sbjct 1052 GACACGGCCAACCTGCTGGCCGAAATCCTGCG 1083
Score = 178 bits (196), Expect = 3e-42
Identities = 121/136 (89%), Gaps = 0/136 (0%)
Strand=Plus/Plus
Query 283 AAAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGC 342
|| ||||||||||||||||| ||||| ||||| || |||||||||| || ||||| |||
Sbjct 1181 AAGAACGGCACCCTCGGCCAAAGCCACTGGCCGGAGCTGCTCAAGGCCTACGGCAGCCGC 1240
Query 343 CAGCCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTG 402
|||||||| ||||| || ||||||||||||||||||||||||||||| || |||||||||
Sbjct 1241 CAGCCGGGCGCGACCATTTGGGGCCTGCCGAAAAACCAGGTCAACCACCGTATCTACGTG 1300
Query 403 ACCGACGCCAAGGGCA 418
|| |||||||||||||
Sbjct 1301 ACGGACGCCAAGGGCA 1316
>seq2328332
Length=141
Score = 187 bits (206), Expect = 6e-45
Identities = 123/136 (90%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 283 AAAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGTCGC 342
|| ||||||||||||||||| ||||| ||||| || |||||||||| || ||||| |||
Sbjct 141 AAGAACGGCACCCTCGGCCAAAGCCACTGGCCGGAGCTGCTCAAGGCGTACGGCAGCCGC 82
Query 343 CAGCCGGGAGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTG 402
|||||||| |||||||||||||||||||||||||||||||||||||| || |||||||||
Sbjct 81 CAGCCGGGCGCGACGATCTGGGGCCTGCCGAAAAACCAGGTCAACCACCGTATCTACGTG 22
Query 403 ACCGACGCCAAGGGCA 418
|| |||||||||||||
Sbjct 21 ACGGACGCCAAGGGCA 6
>seq2155183
Length=127
Score = 147 bits (162), Expect = 5e-33
Identities = 108/126 (86%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 220 TCCACCGAAGAAACATTGGTGGACACCGCCAACCTGCTGGCTGAAATCCTGCGTGCAGAC 279
|||||||||||||| |||||||||| |||||||||||||| ||||||||||| |||
Sbjct 126 TCCACCGAAGAAACCCTGGTGGACACGGCCAACCTGCTGGCCGAAATCCTGCGGCTGGAC 67
Query 280 GTTAAAAACGGCACCCTCGGCCAGAGCCATTGGCCCGAATTGCTCAAGGCTTATGGCAGT 339
|| || ||||||||||||||||| ||||| ||||| || |||||||||| || |||||
Sbjct 66 GTAAAGAACGGCACCCTCGGCCAAAGCCACTGGCCGGAGCTGCTCAAGGCGTACGGCAGC 7
Query 340 CGCCAG 345
||||||
Sbjct 6 CGCCAG 1
>seq1490342
Length=124
Score = 118 bits (130), Expect = 3e-24
Identities = 92/118 (78%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 44 GCGGCGGATGCCGAGCCGATCCAGACCCATCGCGGCCTNNNNNNNNNNNNNNNNNNNNNN 103
||||||||||||||||||||||||||||||||||||||
Sbjct 7 GCGGCGGATGCCGAGCCGATCCAGACCCATCGCGGCCTCGGCTACAGCTACAGCCCGAGC 66
Query 104 NNCAGCTGATGCGCCTTGGGCTGCGGATTTTCCTGGTGTATGCGCTGTTTATCGGCCT 161
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 67 CACAGCTGATGCGCCTGGGGCTGCGGATCTTCCTGGTGTATGCGCTGTTTATCGGCCT 124
>seq2839943
Length=261
Score = 105 bits (116), Expect = 2e-20
Identities = 72/81 (89%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 1 CGATAGCCATATCAAGAGCCTGCGCAGCAAGCTCAGGAGTGTGGCGGCGGATGCCGAGCC 60
||| ||||||||||| |||||||||||||| || | || | |||||||||||||||||
Sbjct 100 CGACAGCCATATCAAAAGCCTGCGCAGCAAACTGCGAAGCATTGCGGCGGATGCCGAGCC 41
Query 61 GATCCAGACCCATCGCGGCCT 81
|||||||||||||||||||||
Sbjct 40 GATCCAGACCCATCGCGGCCT 20
>seq2877829
Length=299
Score = 102 bits (112), Expect = 2e-19
Identities = 65/71 (92%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 361 TGGGGCCTGCCGAAAAACCAGGTCAACCATCGCATCTACGTGACCGACGCCAAGGGCAGG 420
||||||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1 TGGGGCCTGCCGAAAAACCAGGTCAACCACCGTATCTACGTGACGGACGCCAAGGGCATT 60
Query 421 GTATTGCTCGA 431
|| ||||||||
Sbjct 61 GTGTTGCTCGA 71
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1237365891552
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