Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001603.1 Length=479 Score E Sequences producing significant alignments: (Bits) Value seq168358 702 0.0 seq3024467 654 0.0 seq2907907 517 3e-144 seq2880109 457 3e-126 seq2493278 268 3e-69 seq2493279 264 3e-68 seq2070534 197 4e-48 seq2359999 181 3e-43 seq3077726 172 2e-40 seq2141653 147 6e-33 seq3022995 91.5 4e-16 seq2978254 82.4 2e-13 seq2814969 82.4 2e-13 >seq168358 Length=3320 Score = 702 bits (778), Expect = 0.0 Identities = 442/476 (93%), Gaps = 1/476 (0%) Strand=Plus/Plus Query 3 AGGTAGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACA 62 ||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||| ||| Sbjct 2344 AGGTAGTTGCCGCCGATAATCGCGACAAACGCCATGGTGATGCCAATCAGGCTCAAGACA 2403 Query 63 TCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGT 122 ||||| |||||||||||||||||||||| |||||||||||||||||||| || | |||| Sbjct 2404 TCCATCAGAGGCAGGCCTCCACCAGATGTTTGCCGATGTCGTCCAGGCTATAAACAGCGT 2463 Query 123 CGGCCAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTTCGT 182 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2464 CGGCCAGGTCCGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTTCGT 2523 Query 183 CCTGGGCCCAGATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACGGCCGTCGG 242 |||| ||||||||| | ||||||||||||||||||||||| ||||| ||||||||||||| Sbjct 2524 CCTGCGCCCAGATCGCGCTGCCGCCCTGCTTGAGCAGGCGTGCGCCCTCACGGCCGTCGG 2583 Query 243 CGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCGGCCGAA 302 ||||||||| ||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 2584 CGCCCATGC-CGGTGAGTACCACCGCCAGAACTTTGTCGCCGTAGGACTTGGCCGCCGAG 2642 Query 303 CCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCAGGATTTTG 362 ||||||||||| |||||||||||||||||||||| ||| || || ||||||||||||||| Sbjct 2643 CCGAAGGTGATATCCACGCACGGCTTGTAGTTCAAGCGCTCGTCGCCCGGCAGGATTTTG 2702 Query 363 ATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCGCCAGGCCA 422 |||||||||||||| || ||||||||||||||||| ||||| |||||||||||||||||| Sbjct 2703 ATCGCGCCACGGCCGTCGACCATCATCTGCTTGCCGCCCGGTGCCAGCAGCGCCAGGCCA 2762 Query 423 GGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGATTGTC 478 || ||||||||||| ||||||||||||||||||||||||||||||||||| || || Sbjct 2763 GGTCGCAGGATGTCACCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGCTTATC 2818 >seq3024467 Length=841 Score = 654 bits (724), Expect = 0.0 Identities = 400/424 (94%), Gaps = 1/424 (0%) Strand=Plus/Minus Query 55 TCAACACATCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTA 114 |||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 841 TCAAGACATCCATCAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTA 782 Query 115 GATGGCGTCGGCCAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCT 174 || ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| Sbjct 781 GACCGCGTCAGCCAGGTCGGCCTTGACGATGGCCATGGGCATGCCATAGATCACACAGCT 722 Query 175 GGCTTCGTCCTGGGCCCAGATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACG 234 ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| Sbjct 721 GGCTTCGTCCTGGGCCCAGATGGCGCTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACG 662 Query 235 GCCGTCGGCGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGG 294 ||||||||||||||||| ||||||| ||||||||||||||||||||||| |||||||||| Sbjct 661 GCCGTCGGCGCCCATGC-CGGTGAGCACCACCGCCAGAACTTTGTCGCCATAGGACTTGG 603 Query 295 CGGCCGAACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCA 354 | |||||||||||||| ||||||||||||||||||||||||||||| || || || |||| Sbjct 602 CCGCCGAACCGAAGGTAATGTCCACGCACGGCTTGTAGTTCAGGCGCTCGTCGCCTGGCA 543 Query 355 GGATTTTGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCG 414 |||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 542 GGATCTTGATCGCACCACGGCCGTCCACCATCATCTGCTTGCCACCCGGGGCCAGCAGCG 483 Query 415 CCAGGCCAGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGAT 474 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| | Sbjct 482 CCAGGCCAGGGCGCAGGATGTCGCCGTCCTCGGCTTCCTTGACGCTGATGCGGCACAGCT 423 Query 475 TGTC 478 |||| Sbjct 422 TGTC 419 >seq2907907 Length=345 Score = 517 bits (572), Expect = 3e-144 Identities = 323/346 (93%), Gaps = 1/346 (0%) Strand=Plus/Plus Query 55 TCAACACATCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTA 114 |||| |||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 1 TCAAGACATCCATCAGAGGCAGGCCTCCACCAGATGTTTGCCGATGTCGTCCAGGCTATA 60 Query 115 GATGGCGTCGGCCAGGTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCT 174 | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 AACCGCGTCAGCCAGGTCCGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCT 120 Query 175 GGCTTCGTCCTGGGCCCAGATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACG 234 |||||||||||||||||||||| | |||||||||||||| |||||||| ||||||||||| Sbjct 121 GGCTTCGTCCTGGGCCCAGATCGCGCTGCCGCCCTGCTTAAGCAGGCGTGCGCCTTCACG 180 Query 235 GCCGTCGGCGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGG 294 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 181 GCCGTCGGCGCCCATGC-CGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTTGG 239 Query 295 CGGCCGAACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGGCA 354 | ||||||||||||||||| ||||| |||||||||||||||||||| || || ||||||| Sbjct 240 CCGCCGAACCGAAGGTGATATCCACACACGGCTTGTAGTTCAGGCGCTCGTCGCCCGGCA 299 Query 355 GGATTTTGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACC 400 |||||||||||||||||||||| || ||||||||||||||||| || Sbjct 300 GGATTTTGATCGCGCCACGGCCGTCGACCATCATCTGCTTGCCGCC 345 >seq2880109 Length=302 Score = 457 bits (506), Expect = 3e-126 Identities = 284/303 (94%), Gaps = 1/303 (0%) Strand=Plus/Plus Query 173 CTGGCTTCGTCCTGGGCCCAGATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCA 232 |||||||||||||||||||| || | ||||||||||||||||||||||| ||||||||| Sbjct 1 CTGGCTTCGTCCTGGGCCCAAATGGCGCTGCCGCCCTGCTTGAGCAGGCGTGCGCCTTCA 60 Query 233 CGGCCGTCGGCGCCCATGCTCGGTGAGGACCACCGCCAGAACTTTGTCGCCGTAGGACTT 292 ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| || Sbjct 61 CGGCCGTCGGCGCCCATGC-CGGTGAGCACCACCGCCAGAACTTTGTCGCCGTAGGATTT 119 Query 293 GGCGGCCGAACCGAAGGTGATGTCCACGCACGGCTTGTAGTTCAGGCGTTCATCCCCCGG 352 || || || |||||||||||||||||||||||||||||||| ||||| ||||| ||||| Sbjct 120 CGCCGCAGAGCCGAAGGTGATGTCCACGCACGGCTTGTAGTTGAGGCGCTCATCGCCCGG 179 Query 353 CAGGATTTTGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCAGCAG 412 ||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| Sbjct 180 CAGGATTTTGATCGCGCCACGGCCATCGACCATCATCTGCTTGCCGCCCGGGGCCAGCAG 239 Query 413 CGCCAGGCCAGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAG 472 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 240 CGCCAGGCCAGGACGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAG 299 Query 473 ATT 475 || Sbjct 300 CTT 302 >seq2493278 Length=166 Score = 268 bits (296), Expect = 3e-69 Identities = 159/166 (96%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 70 GAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGTCGGCCAG 129 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 166 GAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGACGGCGTCGGCCAG 107 Query 130 GTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTTCGTCCTGGGC 189 ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 106 GTCTGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTTCGTCCTGGGC 47 Query 190 CCAGATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACGG 235 ||| || | ||||||||||||||||||||||| |||||||||||| Sbjct 46 CCAAATGGCGCTGCCGCCCTGCTTGAGCAGGCGTGCGCCTTCACGG 1 >seq2493279 Length=166 Score = 264 bits (292), Expect = 3e-68 Identities = 158/166 (95%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 70 GAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGTCGGCCAG 129 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 166 GAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGACGGCGTCGGCCAG 107 Query 130 GTCAGCCTTGACGATGGCCATGGGCATGCCATAGATCACGCAGCTGGCTTCGTCCTGGGC 189 ||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| Sbjct 106 GTCAGCCTTGACGATGGCCATGGGCATGCCATAAATCACGCAACTGGCTTCGTCCTGGGC 47 Query 190 CCAGATCACACTGCCGCCCTGCTTGAGCAGGCGCGCGCCTTCACGG 235 ||| || | ||||||||||||||||||||||| |||||||||||| Sbjct 46 CCAAATGGCGCTGCCGCCCTGCTTGAGCAGGCGTGCGCCTTCACGG 1 >seq2070534 Length=127 Score = 197 bits (218), Expect = 4e-48 Identities = 120/127 (94%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 349 CCGGCAGGATTTTGATCGCGCCACGGCCATCCACCATCATCTGCTTGCCACCCGGGGCCA 408 |||||||||||||||||||||||||||| || ||||||||||||||||| ||||| |||| Sbjct 127 CCGGCAGGATTTTGATCGCGCCACGGCCGTCGACCATCATCTGCTTGCCGCCCGGTGCCA 68 Query 409 GCAGCGCCAGGCCAGGGCGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGC 468 ||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 67 GCAACGCCAGGCCAGGACGCAGGATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGC 8 Query 469 ACAGATT 475 |||| || Sbjct 7 ACAGCTT 1 >seq2359999 Length=145 Score = 181 bits (200), Expect = 3e-43 Identities = 112/120 (93%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 3 AGGTAGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACA 62 ||||||||||||||||| || ||||||||||||||| | ||||| ||||||||||| ||| Sbjct 26 AGGTAGTTGCCGCCGATAATCGCGACAAACGCCATGGTAATGCCAATCAGGCTCAATACA 85 Query 63 TCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGATGGCGT 122 ||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 86 TCCATCAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGCTGTAGACGGCGT 145 >seq3077726 Length=1981 Score = 172 bits (190), Expect = 2e-40 Identities = 103/108 (95%), Gaps = 0/108 (0%) Strand=Plus/Minus Query 3 AGGTAGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACA 62 |||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| ||| Sbjct 108 AGGTAGTTGCCGCCGATGATCGCGACAAACGCCAGGGTGATGCCGATCAGGCTCAAGACA 49 Query 63 TCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGC 110 ||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 48 TCCATCAGAGGCAGGCCTCCACCAGATGCTTGCCGATGTCGTCCAGGC 1 >seq2141653 Length=127 Score = 147 bits (162), Expect = 6e-33 Identities = 92/99 (93%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 3 AGGTAGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACA 62 ||||||||||||||||| || |||||||||||||| ||||||| ||||||||||| ||| Sbjct 29 AGGTAGTTGCCGCCGATAATCGCGACAAACGCCATCGTGATGCCAATCAGGCTCAAGACA 88 Query 63 TCCATTAGAGGCAGGCCTCCACCAGATGCTTGCCGATGT 101 ||||| ||||||||||||||||||||||||||||||||| Sbjct 89 TCCATCAGAGGCAGGCCTCCACCAGATGCTTGCCGATGT 127 >seq3022995 Length=829 Score = 91.5 bits (100), Expect = 4e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 3 AGGTAGTTGCCGCCGATGATGGCGACAAACGCCATGATGATGCCGATCAGGCTCAACACA 62 ||||||||||||||||| || ||||||||||||||| ||||||| ||||||||||| ||| Sbjct 63 AGGTAGTTGCCGCCGATAATCGCGACAAACGCCATGGTGATGCCAATCAGGCTCAAGACA 4 Query 63 TCC 65 ||| Sbjct 3 TCC 1 >seq2978254 Length=550 Score = 82.4 bits (90), Expect = 2e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 431 GATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGATTGTC 478 |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 GATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTC 48 >seq2814969 Length=243 Score = 82.4 bits (90), Expect = 2e-13 Identities = 47/48 (98%), Gaps = 0/48 (0%) Strand=Plus/Plus Query 431 GATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGATTGTC 478 |||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1 GATGTCGCCATCCTCGGCTTCCTTGACGCTGATGCGGCACAGCTTGTC 48 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1386221938656