Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001614.1 Length=458 Score E Sequences producing significant alignments: (Bits) Value seq101740 306 1e-80 seq3074478 233 5e-59 seq3082773 226 8e-57 seq3088041 176 1e-41 seq2905016 163 8e-38 seq2865532 100 8e-19 >seq101740 Length=4714 Score = 306 bits (338), Expect = 1e-80 Identities = 368/488 (75%), Gaps = 38/488 (8%) Strand=Plus/Minus Query 1 TCGAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGT 60 ||||| || ||| ||||||||| |||| ||||| ||| ||||| || || | ||| | Sbjct 1967 TCGAACTTGAACGTGGGGCCGCAGTGTTCAAGCAT-GAAACGGCGAACGTT-CTGGGTAT 1910 Query 61 TTTTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTAGTCGCTGTGCCAGTC 120 ||||| ||| |||| ||||| ||| ||||||||| || || ||||||||||||||| Sbjct 1909 TTTTA-TAGTGTGGGGTCACGGG-AGT-GGCGCGGGT-GATGGC-GTCGCTGTGCCAGTC 1855 Query 121 AAAATCCATTTTAGTCGCTCGGGCGCGTTGTT---TGGGCGATAACATAGCGATGTGCCA 177 ||||||||| || ||| |||||||| ||||| || || || |||||||| || Sbjct 1854 AAAATCCATGTT-GTCTCTCGGGCGGCTTGTTATTTGCGCAGTAGCATAGCGACCGGCTT 1796 Query 178 TCTAGCCAGGAAG----AAT------CTCCCAGGATTATTTACTGTGTTAGGACGTCATA 227 | | | ||||| || | ||| |||||| |||||| |||||| || Sbjct 1795 GTTGGGCTGGAAGCGACAAGGCGTGCCGCCCGCACTTATTTGATGTGTTGAGACGTCGTA 1736 Query 228 TATGACCAG----TCGC-----CGCTATCACGCCTAATAATTTCAAGATATTTCAAAATT 278 | || | | || | || |||| |||||| |||||||||||||||||||| Sbjct 1735 CAAGAACTGCAGTTCTCAATAACGTCATCAAGCCTAACCTTTTCAAGATATTTCAAAATT 1676 Query 279 TCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCTGTCGTATT 338 |||||||| || |||| ||||| |||||||||||||||||||| ||||||||| || Sbjct 1675 TCACTTTCCTTCTGCCTCGAAAATATTGCATGGTTGTACGACGACTACAGCTGTCGTGTT 1616 Query 339 CACCCC--ACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCGGTTTTCT 396 |||||| ||||||| ||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 1615 CACCCCCAACAACAATAAGGAAACACCCATGCCAAACGTCAAAGTGCTGATCGGTTTTCT 1556 Query 397 GTGCCTGTTCAGCGGCTATGTGGCTG------CCGCTCCCGCGGAAAAGGACGTGGCCCA 450 ||||||||||| |||||| || || | | || || || |||||||| |||||||| Sbjct 1555 GTGCCTGTTCACCGGCTACGTCGCAGCTGCGCCTGCCCCGGCCGAAAAGGATGTGGCCCA 1496 Query 451 AGCGGTCG 458 |||||||| Sbjct 1495 AGCGGTCG 1488 >seq3074478 Length=1786 Score = 233 bits (258), Expect = 5e-59 Identities = 316/428 (74%), Gaps = 32/428 (7%) Strand=Plus/Minus Query 1 TCGAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGT 60 ||||| || ||| |||||| ||| |||| ||||| ||| ||||| || || | ||| | Sbjct 420 TCGAACTTGAACGTCGGGCCACAGTGTTCAAGCAT-GAAACGGCGAACGTT-CTGGGTAT 363 Query 61 TTTTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTAGTCGCTGTGCCAGTC 120 |||| |||| |||| ||||| ||| ||||||||| || | ||||||||||||||| Sbjct 362 TTTT-GTAGTGTGGGGTCACGGG-AGT-GGCGCGGGT-GATGAC-GTCGCTGTGCCAGTC 308 Query 121 AAAATCCATTTTAGTCGCTCGGGCGCGTTGTT---TGGGCGATAACATAGCGATGTGCCA 177 ||||||||| || ||| |||||| | ||||| || || || ||||||||| || Sbjct 307 AAAATCCATGTT-GTCTCTCGGGTGGTTTGTTATTTGCGCAGTAGCATAGCGATCGGCTT 249 Query 178 TCTAGCCAGGAAG----AATCTC-----CCAGGA-TTATTTACTGTGTTAGGACGTCATA 227 | | | ||||| || | || | | |||||| |||||| ||||||| || Sbjct 248 GTTGGGCTGGAAGCGACAAGGTGTGCCGCCCGCACTTATTTGATGTGTTGGGACGTCGTA 189 Query 228 TATGACCAGTCGCCGCT---------ATCACGCCTAATAATTTCAAGATATTTCAAAATT 278 | || | || | | |||| | ||||| |||| ||||||||||||||| Sbjct 188 CAAGAACCCGAGCTGTTTATAACGTCATCAAGGCTAATCTTTTCTAGATATTTCAAAATT 129 Query 279 TCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCTGTCGTATT 338 ||||||||||| || ||||| ||||||||||||||||||| || ||||| || Sbjct 128 TCACTTTCTTTCCCTCTCGAAAATATTGCATGGTTGTACGACGACTTAAATGGTCGTGTT 69 Query 339 CACCCC--ACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCGGTTTTCT 396 |||| | ||||||| ||||||||||||||||| |||||||||||| ||||||||||||| Sbjct 68 CACCGCCAACAACAATAAGGAAACACCCATGCCAAACGTCAAAGTGCTGATCGGTTTTCT 9 Query 397 GTGCCTGT 404 |||||||| Sbjct 8 GTGCCTGT 1 >seq3082773 Length=2577 Score = 226 bits (250), Expect = 8e-57 Identities = 314/429 (73%), Gaps = 38/429 (9%) Strand=Plus/Plus Query 1 TCGAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGT 60 ||||| || |||||||| |||||| |||| ||||| ||| ||||| || || | ||| || Sbjct 2160 TCGAACTTGAACCCCGGACCGCAGTGTTCAAGCAT-GAAACGGCGAACGTT-CTGGGTGT 2217 Query 61 TTTTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTAGTCGCTGTGCCAGTC 120 |||| |||| |||| |||||| |||| |||| ||| | |||||||||||||| Sbjct 2218 TTTT-GTAGTGGGGGGTGACGGGG-GTAG-CGCGAGTAATGAC--GTCGCTGTGCCAGTT 2272 Query 121 AAAATCCATTTTAGTCGCTCGGGCGCGT----TGTTTGGGCGATAACATAGCGATGTGCC 176 |||||||||||| | ||||||||| | ||| | ||| || ||||||||||||| Sbjct 2273 AAAATCCATTTTC--CCCTCGGGCGCTTATGGTGTGTCGGCAGTAGCATAGCGATGTGCT 2330 Query 177 ATCTAGCCAGGAAG----------AATCTCCCAGGATTATTTACTGTGTTAGGACGTCAT 226 | | ||||||| || ||| || | | | |||||| ||| ||| | Sbjct 2331 ACTTGAGCAGGAAGCGGCAAGGCAAAACTCGCACCACCAGCTCTTGTGTTGGGATGTCGT 2390 Query 227 ATATGACCAGTCGC--CGCT-ATCACGC--------CTAATAATTTCAAGATATTTCAAA 275 | | |||| |||| || | || ||| |||| |||||||||||||| || Sbjct 2391 ACAAGACC--TCGCAACGTTCATAACGAGACGATGACTAACCCTTTCAAGATATTTCGAA 2448 Query 276 ATTTCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCTGTCGT 335 |||||||||||||| | | | ||||| ||||||||||||||||||| || ||||| Sbjct 2449 ATTTCACTTTCTTTCCCCATCAGAAATATTGCATGGTTGTACGACGACTTAAATCGTCGT 2508 Query 336 ATTCACCCC--ACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCGGTTT 393 | |||| ||||||| |||||||||||||||| |||||||||||| |||||||||| Sbjct 2509 GCCCGCCCCCAACAACAATAAGGAAACACCCATGCAAAACGTCAAAGTGCTGATCGGTTT 2568 Query 394 TCTGTGCCT 402 ||||||||| Sbjct 2569 TCTGTGCCT 2577 >seq3088041 Length=6911 Score = 176 bits (194), Expect = 1e-41 Identities = 158/195 (81%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 272 CAAAATTTCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCT- 330 ||||||||||||||| || ||| || || |||||||||||||||||| | | || Sbjct 435 CAAAATTTCACTTTCCTTCTCCCTCGCACTTAATGCATGGTTGTACGACGAC-ATACCTC 493 Query 331 GTCGTATTCAC-CCCACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCG 389 |||||||| || ||||||| |||||||||||||||||||||||| |||||||| |||||| Sbjct 494 GTCGTATTTACACCCACAAAAACAAGGAAACACCCATGCCCAACTTCAAAGTGCTGATCG 553 Query 390 GTTTTCTGTGCCTGTTCAGCGGCTATGTGGCTGCC------GCTCCCGCGGAAAAGGACG 443 ||| |||||||||||| |||| || || | ||| |||||||| || ||||| | Sbjct 554 CTTTCCTGTGCCTGTTCTGCGGTTACGTCACAGCCGCGCCGGCTCCCGCCGAGAAGGATG 613 Query 444 TGGCCCAAGCGGTCG 458 ||||||| ||||||| Sbjct 614 TGGCCCAGGCGGTCG 628 Score = 84.2 bits (92), Expect = 6e-14 Identities = 103/133 (77%), Gaps = 11/133 (8%) Strand=Plus/Plus Query 3 GAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGTTT 62 ||| || ||| ||||||||||| | || ||||| |||||||||||| || | ||| || Sbjct 253 GAACTTGAACGCCGGGCCGCAGTGCTCAAGCAT-GAAGCGGCGCACGTT-CTGGGTATTC 310 Query 63 TTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTA--GTCGCTGTGCCAGTC 120 | ||||| |||| |||||| |||| ||||||| | || | | ||||||||||| Sbjct 311 CT-GTAGCTTGGGGTTACGGGT-GTAG-CGCGGGT----GATAACGCCACTGTGCCAGTC 363 Query 121 AAAATCCATTTTA 133 ||||||||||||| Sbjct 364 AAAATCCATTTTA 376 >seq2905016 Length=339 Score = 163 bits (180), Expect = 8e-38 Identities = 232/322 (72%), Gaps = 27/322 (8%) Strand=Plus/Plus Query 106 GTCGCTGTGCCAGTCAAAATCCATTTTAGTCGCTCGGGCGC----GTTGTTTGGGCGATA 161 |||||||||||||| |||||||||||| || |||||| | ||||| | ||| || Sbjct 20 GTCGCTGTGCCAGTTAAAATCCATTTT--TCCCTCGGGGGTTCTTGTTGTGTCGGCAGTA 77 Query 162 ACATAGCGATGTGCCATCTAGCCAGGAAG----------AATCTCCCAGGATTATTTACT 211 ||||||||||||| | | ||||||| || |||||| | | Sbjct 78 GCATAGCGATGTGCTACTTGAGCAGGAAGCGTCACCGTAAAACTCCCACCCCCACACGAT 137 Query 212 GTGTTAGGACGTCATATATGACC---AGTCGCCGCTA-----TCAC-GCCTAATAATTTC 262 ||||| || ||| || | ||| | ||| || |||| |||||| |||| Sbjct 138 GTGTTGAGATGTCGTACAAGACTCTAAAGCGCTTATAACGCGTCACCGCCTAACCTTTTC 197 Query 263 AAGATATTTCAAAATTTCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGA 322 |||||||||||||||||||||||| || | | | ||||| ||||||||||||||||| Sbjct 198 AAGATATTTCAAAATTTCACTTTCCTTCCCCATCAGAAATATTGCATGGTTGTACGACGA 257 Query 323 CTAAAGCTGTCGTATTC-ACCCCA-CAACAACAAGGAAACACCCATGCCCAACGTCAAAG 380 || || || | | |||||| |||||| |||||||||||||||| |||||||||| Sbjct 258 CTTAAATAATCATGCCCGACCCCAACAACAATAAGGAAACACCCATGCAAAACGTCAAAG 317 Query 381 TGTTGATCGGTTTTCTGTGCCT 402 || ||||||||||||||||||| Sbjct 318 TGCTGATCGGTTTTCTGTGCCT 339 >seq2865532 Length=285 Score = 100 bits (110), Expect = 8e-19 Identities = 77/92 (84%), Gaps = 6/92 (7%) Strand=Plus/Minus Query 373 CGTCAAAGTGTTGATCGGTTTTCTGTGCCTGTTCAGCGGCTATGTGGCTG------CCGC 426 |||||||||| |||||||||||||||||||||||| |||||| || || | | || Sbjct 285 CGTCAAAGTGCTGATCGGTTTTCTGTGCCTGTTCACCGGCTACGTCGCAGCTGCGCCTGC 226 Query 427 TCCCGCGGAAAAGGACGTGGCCCAAGCGGTCG 458 ||||| |||||||| |||||||||||||||| Sbjct 225 CCCCGCCGAAAAGGATGTGGCCCAAGCGGTCG 194 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1321097418048