Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001614.1
Length=458
Score E
Sequences producing significant alignments: (Bits) Value
seq101740 306 1e-80
seq3074478 233 5e-59
seq3082773 226 8e-57
seq3088041 176 1e-41
seq2905016 163 8e-38
seq2865532 100 8e-19
>seq101740
Length=4714
Score = 306 bits (338), Expect = 1e-80
Identities = 368/488 (75%), Gaps = 38/488 (8%)
Strand=Plus/Minus
Query 1 TCGAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGT 60
||||| || ||| ||||||||| |||| ||||| ||| ||||| || || | ||| |
Sbjct 1967 TCGAACTTGAACGTGGGGCCGCAGTGTTCAAGCAT-GAAACGGCGAACGTT-CTGGGTAT 1910
Query 61 TTTTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTAGTCGCTGTGCCAGTC 120
||||| ||| |||| ||||| ||| ||||||||| || || |||||||||||||||
Sbjct 1909 TTTTA-TAGTGTGGGGTCACGGG-AGT-GGCGCGGGT-GATGGC-GTCGCTGTGCCAGTC 1855
Query 121 AAAATCCATTTTAGTCGCTCGGGCGCGTTGTT---TGGGCGATAACATAGCGATGTGCCA 177
||||||||| || ||| |||||||| ||||| || || || |||||||| ||
Sbjct 1854 AAAATCCATGTT-GTCTCTCGGGCGGCTTGTTATTTGCGCAGTAGCATAGCGACCGGCTT 1796
Query 178 TCTAGCCAGGAAG----AAT------CTCCCAGGATTATTTACTGTGTTAGGACGTCATA 227
| | | ||||| || | ||| |||||| |||||| |||||| ||
Sbjct 1795 GTTGGGCTGGAAGCGACAAGGCGTGCCGCCCGCACTTATTTGATGTGTTGAGACGTCGTA 1736
Query 228 TATGACCAG----TCGC-----CGCTATCACGCCTAATAATTTCAAGATATTTCAAAATT 278
| || | | || | || |||| |||||| ||||||||||||||||||||
Sbjct 1735 CAAGAACTGCAGTTCTCAATAACGTCATCAAGCCTAACCTTTTCAAGATATTTCAAAATT 1676
Query 279 TCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCTGTCGTATT 338
|||||||| || |||| ||||| |||||||||||||||||||| ||||||||| ||
Sbjct 1675 TCACTTTCCTTCTGCCTCGAAAATATTGCATGGTTGTACGACGACTACAGCTGTCGTGTT 1616
Query 339 CACCCC--ACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCGGTTTTCT 396
|||||| ||||||| ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 1615 CACCCCCAACAACAATAAGGAAACACCCATGCCAAACGTCAAAGTGCTGATCGGTTTTCT 1556
Query 397 GTGCCTGTTCAGCGGCTATGTGGCTG------CCGCTCCCGCGGAAAAGGACGTGGCCCA 450
||||||||||| |||||| || || | | || || || |||||||| ||||||||
Sbjct 1555 GTGCCTGTTCACCGGCTACGTCGCAGCTGCGCCTGCCCCGGCCGAAAAGGATGTGGCCCA 1496
Query 451 AGCGGTCG 458
||||||||
Sbjct 1495 AGCGGTCG 1488
>seq3074478
Length=1786
Score = 233 bits (258), Expect = 5e-59
Identities = 316/428 (74%), Gaps = 32/428 (7%)
Strand=Plus/Minus
Query 1 TCGAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGT 60
||||| || ||| |||||| ||| |||| ||||| ||| ||||| || || | ||| |
Sbjct 420 TCGAACTTGAACGTCGGGCCACAGTGTTCAAGCAT-GAAACGGCGAACGTT-CTGGGTAT 363
Query 61 TTTTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTAGTCGCTGTGCCAGTC 120
|||| |||| |||| ||||| ||| ||||||||| || | |||||||||||||||
Sbjct 362 TTTT-GTAGTGTGGGGTCACGGG-AGT-GGCGCGGGT-GATGAC-GTCGCTGTGCCAGTC 308
Query 121 AAAATCCATTTTAGTCGCTCGGGCGCGTTGTT---TGGGCGATAACATAGCGATGTGCCA 177
||||||||| || ||| |||||| | ||||| || || || ||||||||| ||
Sbjct 307 AAAATCCATGTT-GTCTCTCGGGTGGTTTGTTATTTGCGCAGTAGCATAGCGATCGGCTT 249
Query 178 TCTAGCCAGGAAG----AATCTC-----CCAGGA-TTATTTACTGTGTTAGGACGTCATA 227
| | | ||||| || | || | | |||||| |||||| ||||||| ||
Sbjct 248 GTTGGGCTGGAAGCGACAAGGTGTGCCGCCCGCACTTATTTGATGTGTTGGGACGTCGTA 189
Query 228 TATGACCAGTCGCCGCT---------ATCACGCCTAATAATTTCAAGATATTTCAAAATT 278
| || | || | | |||| | ||||| |||| |||||||||||||||
Sbjct 188 CAAGAACCCGAGCTGTTTATAACGTCATCAAGGCTAATCTTTTCTAGATATTTCAAAATT 129
Query 279 TCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCTGTCGTATT 338
||||||||||| || ||||| ||||||||||||||||||| || ||||| ||
Sbjct 128 TCACTTTCTTTCCCTCTCGAAAATATTGCATGGTTGTACGACGACTTAAATGGTCGTGTT 69
Query 339 CACCCC--ACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCGGTTTTCT 396
|||| | ||||||| ||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 68 CACCGCCAACAACAATAAGGAAACACCCATGCCAAACGTCAAAGTGCTGATCGGTTTTCT 9
Query 397 GTGCCTGT 404
||||||||
Sbjct 8 GTGCCTGT 1
>seq3082773
Length=2577
Score = 226 bits (250), Expect = 8e-57
Identities = 314/429 (73%), Gaps = 38/429 (9%)
Strand=Plus/Plus
Query 1 TCGAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGT 60
||||| || |||||||| |||||| |||| ||||| ||| ||||| || || | ||| ||
Sbjct 2160 TCGAACTTGAACCCCGGACCGCAGTGTTCAAGCAT-GAAACGGCGAACGTT-CTGGGTGT 2217
Query 61 TTTTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTAGTCGCTGTGCCAGTC 120
|||| |||| |||| |||||| |||| |||| ||| | ||||||||||||||
Sbjct 2218 TTTT-GTAGTGGGGGGTGACGGGG-GTAG-CGCGAGTAATGAC--GTCGCTGTGCCAGTT 2272
Query 121 AAAATCCATTTTAGTCGCTCGGGCGCGT----TGTTTGGGCGATAACATAGCGATGTGCC 176
|||||||||||| | ||||||||| | ||| | ||| || |||||||||||||
Sbjct 2273 AAAATCCATTTTC--CCCTCGGGCGCTTATGGTGTGTCGGCAGTAGCATAGCGATGTGCT 2330
Query 177 ATCTAGCCAGGAAG----------AATCTCCCAGGATTATTTACTGTGTTAGGACGTCAT 226
| | ||||||| || ||| || | | | |||||| ||| ||| |
Sbjct 2331 ACTTGAGCAGGAAGCGGCAAGGCAAAACTCGCACCACCAGCTCTTGTGTTGGGATGTCGT 2390
Query 227 ATATGACCAGTCGC--CGCT-ATCACGC--------CTAATAATTTCAAGATATTTCAAA 275
| | |||| |||| || | || ||| |||| |||||||||||||| ||
Sbjct 2391 ACAAGACC--TCGCAACGTTCATAACGAGACGATGACTAACCCTTTCAAGATATTTCGAA 2448
Query 276 ATTTCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCTGTCGT 335
|||||||||||||| | | | ||||| ||||||||||||||||||| || |||||
Sbjct 2449 ATTTCACTTTCTTTCCCCATCAGAAATATTGCATGGTTGTACGACGACTTAAATCGTCGT 2508
Query 336 ATTCACCCC--ACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCGGTTT 393
| |||| ||||||| |||||||||||||||| |||||||||||| ||||||||||
Sbjct 2509 GCCCGCCCCCAACAACAATAAGGAAACACCCATGCAAAACGTCAAAGTGCTGATCGGTTT 2568
Query 394 TCTGTGCCT 402
|||||||||
Sbjct 2569 TCTGTGCCT 2577
>seq3088041
Length=6911
Score = 176 bits (194), Expect = 1e-41
Identities = 158/195 (81%), Gaps = 9/195 (5%)
Strand=Plus/Plus
Query 272 CAAAATTTCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGACTAAAGCT- 330
||||||||||||||| || ||| || || |||||||||||||||||| | | ||
Sbjct 435 CAAAATTTCACTTTCCTTCTCCCTCGCACTTAATGCATGGTTGTACGACGAC-ATACCTC 493
Query 331 GTCGTATTCAC-CCCACAACAACAAGGAAACACCCATGCCCAACGTCAAAGTGTTGATCG 389
|||||||| || ||||||| |||||||||||||||||||||||| |||||||| ||||||
Sbjct 494 GTCGTATTTACACCCACAAAAACAAGGAAACACCCATGCCCAACTTCAAAGTGCTGATCG 553
Query 390 GTTTTCTGTGCCTGTTCAGCGGCTATGTGGCTGCC------GCTCCCGCGGAAAAGGACG 443
||| |||||||||||| |||| || || | ||| |||||||| || ||||| |
Sbjct 554 CTTTCCTGTGCCTGTTCTGCGGTTACGTCACAGCCGCGCCGGCTCCCGCCGAGAAGGATG 613
Query 444 TGGCCCAAGCGGTCG 458
||||||| |||||||
Sbjct 614 TGGCCCAGGCGGTCG 628
Score = 84.2 bits (92), Expect = 6e-14
Identities = 103/133 (77%), Gaps = 11/133 (8%)
Strand=Plus/Plus
Query 3 GAATTTAAACCCCGGGCCGCAGAGTTCCAGCATAGAAGCGGCGCACATTTCAGGGAGTTT 62
||| || ||| ||||||||||| | || ||||| |||||||||||| || | ||| ||
Sbjct 253 GAACTTGAACGCCGGGCCGCAGTGCTCAAGCAT-GAAGCGGCGCACGTT-CTGGGTATTC 310
Query 63 TTAGTAGCCAGGGGAGACGGGTAGTAGGCGCGGGTAGAGGGTA--GTCGCTGTGCCAGTC 120
| ||||| |||| |||||| |||| ||||||| | || | | |||||||||||
Sbjct 311 CT-GTAGCTTGGGGTTACGGGT-GTAG-CGCGGGT----GATAACGCCACTGTGCCAGTC 363
Query 121 AAAATCCATTTTA 133
|||||||||||||
Sbjct 364 AAAATCCATTTTA 376
>seq2905016
Length=339
Score = 163 bits (180), Expect = 8e-38
Identities = 232/322 (72%), Gaps = 27/322 (8%)
Strand=Plus/Plus
Query 106 GTCGCTGTGCCAGTCAAAATCCATTTTAGTCGCTCGGGCGC----GTTGTTTGGGCGATA 161
|||||||||||||| |||||||||||| || |||||| | ||||| | ||| ||
Sbjct 20 GTCGCTGTGCCAGTTAAAATCCATTTT--TCCCTCGGGGGTTCTTGTTGTGTCGGCAGTA 77
Query 162 ACATAGCGATGTGCCATCTAGCCAGGAAG----------AATCTCCCAGGATTATTTACT 211
||||||||||||| | | ||||||| || |||||| | |
Sbjct 78 GCATAGCGATGTGCTACTTGAGCAGGAAGCGTCACCGTAAAACTCCCACCCCCACACGAT 137
Query 212 GTGTTAGGACGTCATATATGACC---AGTCGCCGCTA-----TCAC-GCCTAATAATTTC 262
||||| || ||| || | ||| | ||| || |||| |||||| ||||
Sbjct 138 GTGTTGAGATGTCGTACAAGACTCTAAAGCGCTTATAACGCGTCACCGCCTAACCTTTTC 197
Query 263 AAGATATTTCAAAATTTCACTTTCTTTAAGCCTGACAAATACGGCATGGTTGTACGACGA 322
|||||||||||||||||||||||| || | | | ||||| |||||||||||||||||
Sbjct 198 AAGATATTTCAAAATTTCACTTTCCTTCCCCATCAGAAATATTGCATGGTTGTACGACGA 257
Query 323 CTAAAGCTGTCGTATTC-ACCCCA-CAACAACAAGGAAACACCCATGCCCAACGTCAAAG 380
|| || || | | |||||| |||||| |||||||||||||||| ||||||||||
Sbjct 258 CTTAAATAATCATGCCCGACCCCAACAACAATAAGGAAACACCCATGCAAAACGTCAAAG 317
Query 381 TGTTGATCGGTTTTCTGTGCCT 402
|| |||||||||||||||||||
Sbjct 318 TGCTGATCGGTTTTCTGTGCCT 339
>seq2865532
Length=285
Score = 100 bits (110), Expect = 8e-19
Identities = 77/92 (84%), Gaps = 6/92 (7%)
Strand=Plus/Minus
Query 373 CGTCAAAGTGTTGATCGGTTTTCTGTGCCTGTTCAGCGGCTATGTGGCTG------CCGC 426
|||||||||| |||||||||||||||||||||||| |||||| || || | | ||
Sbjct 285 CGTCAAAGTGCTGATCGGTTTTCTGTGCCTGTTCACCGGCTACGTCGCAGCTGCGCCTGC 226
Query 427 TCCCGCGGAAAAGGACGTGGCCCAAGCGGTCG 458
||||| |||||||| ||||||||||||||||
Sbjct 225 CCCCGCCGAAAAGGATGTGGCCCAAGCGGTCG 194
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1321097418048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |