Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001616.1 Length=254 Score E Sequences producing significant alignments: (Bits) Value seq2879051 327 2e-87 seq2879052 309 4e-82 seq233749 300 2e-79 seq2920014 226 4e-57 seq2589201 163 4e-38 >seq2879051 Length=301 Score = 327 bits (362), Expect = 2e-87 Identities = 225/254 (89%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60 |||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | || Sbjct 24 CGAACACATGGTTGAGCAGAAAGTCGCGGCTCAACGGGCGGTTCGGGTGCTGCAACAACA 83 Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120 |||||| | |||||||||||||||||||||||||||||||||| || || || |||| Sbjct 84 GGCGCAACACGCGGTAATCCGAATTGCCCAGGCTGACCACCACGCCTTCGGGGCTGAGCA 143 Query 121 ATTGGCGCGCCCGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCA 180 ||| |||||||||||||||||||||||||| ||||| || ||||||||||| ||||||| Sbjct 144 GTTGCCGCGCCCGGGTGTCGAGTTGCCAGCCCGCGAACCGAATGCTCGGCGCCTCATCCA 203 Query 181 GTCGCGCCCGGTCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACA 240 | ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| ||||||| || Sbjct 204 GGCGCGCACGGTCCGGAAAACTCTGTACCCGGCGCAACACCACCTTGATGCGCACCAGCA 263 Query 241 GTTCCCGCGGGTCG 254 ||| ||||||||| Sbjct 264 ATTCACGCGGGTCG 277 >seq2879052 Length=301 Score = 309 bits (342), Expect = 4e-82 Identities = 221/254 (87%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60 |||||||||||||||||||||| |||||||||| |||||| || ||||||||||| | || Sbjct 24 CGAACACATGGTTGAGCAGAAAGTCGCGGCTCAACGGGCGATTGGGGTGCTGCAACAACA 83 Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120 |||||| | ||||||||||||||||||| |||||||||||||| || || || |||| Sbjct 84 GGCGCAACACGCGGTAATCCGAATTGCCGAGGCTGACCACCACGCCTTCGGGGCTGAGCA 143 Query 121 ATTGGCGCGCCCGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCA 180 || |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||| Sbjct 144 GCTGCCGCGCCCGTGTGTCGAGTTGCCAGCCGGCGAACCGGATGCTCGGCGCCTCATCCA 203 Query 181 GTCGCGCCCGGTCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACA 240 | ||||| ||||| ||| ||||||| |||||||| || ||||||||||| ||||||| || Sbjct 204 GGCGCGCACGGTCCGGAAAACTCTGTACCCGGCGTAACACCACCTTGATGCGCACCAGCA 263 Query 241 GTTCCCGCGGGTCG 254 ||| ||||||||| Sbjct 264 ATTCACGCGGGTCG 277 >seq233749 Length=1206 Score = 300 bits (332), Expect = 2e-79 Identities = 219/254 (86%), Gaps = 0/254 (0%) Strand=Plus/Plus Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60 |||| ||||||||||||| ||| ||||| |||| ||| ||||||||||||||||| |||| Sbjct 60 CGAAGACATGGTTGAGCAAAAAGTCGCGACTCAACGGCCGGTTCGGGTGCTGCAACAGCA 119 Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120 |||||||| | ||||||||||| ||||||||||| |||||||| || || |||| |||| Sbjct 120 GGCGCAGCACACGGTAATCCGAGTTGCCCAGGCTCACCACCACGCCCTCGGGCGTGAGCA 179 Query 121 ATTGGCGCGCCCGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCA 180 |||| |||||||| |||||||| ||||||||||| ||||| || |||||||| || |||| Sbjct 180 ATTGCCGCGCCCGTGTGTCGAGCTGCCAGCCGGCAAAACGAATACTCGGCGCCTCGTCCA 239 Query 181 GTCGCGCCCGGTCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACA 240 | ||||| ||||| ||| | |||||||||||||||| ||||||||||||||||||| || Sbjct 240 GCCGCGCGCGGTCCGGAAAGCTCTGCACCCGGCGCAGCACCACCTTGATCCGCACCAGCA 299 Query 241 GTTCCCGCGGGTCG 254 || ||||||||| Sbjct 300 ACTCACGCGGGTCG 313 >seq2920014 Length=368 Score = 226 bits (250), Expect = 4e-57 Identities = 160/183 (87%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 72 CGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCAATTGGCGCGCC 131 ||||||||||| ||||||||||| |||||||| || || |||| |||||||| |||||| Sbjct 1 CGGTAATCCGAGTTGCCCAGGCTCACCACCACGCCCTCGGGCGTGAGCAATTGCCGCGCC 60 Query 132 CGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCAGTCGCGCCCGG 191 || |||||||||||||||||||| || |||||||||||||| || ||||| ||||| ||| Sbjct 61 CGTGTGTCGAGTTGCCAGCCGGCAAACCGGATGCTCGGCGCCTCGTCCAGCCGCGCGCGG 120 Query 192 TCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACAGTTCCCGCGGG 251 || ||| | ||||||||||||||||| ||||| ||||||||||||| ||| || |||||| Sbjct 121 TCCGGAAAGCTCTGCACCCGGCGCAACACCACTTTGATCCGCACCAGCAGCTCACGCGGG 180 Query 252 TCG 254 ||| Sbjct 181 TCG 183 >seq2589201 Length=179 Score = 163 bits (180), Expect = 4e-38 Identities = 116/133 (87%), Gaps = 0/133 (0%) Strand=Plus/Plus Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60 |||||||||||||||||| ||| ||||| |||| ||| ||||||||||||||||| | || Sbjct 46 CGAACACATGGTTGAGCAAAAAGTCGCGACTCAACGGCCGGTTCGGGTGCTGCAACAACA 105 Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120 |||| ||| ||||||||||||| ||||||||||| |||||||| || || |||| |||| Sbjct 106 GGCGAAGCACGCGGTAATCCGAGTTGCCCAGGCTCACCACCACGCCCTCGGGCGTGAGCA 165 Query 121 ATTGGCGCGCCCG 133 |||| |||||||| Sbjct 166 ATTGCCGCGCCCG 178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 692249123457