Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001616.1
Length=254
Score E
Sequences producing significant alignments: (Bits) Value
seq2879051 327 2e-87
seq2879052 309 4e-82
seq233749 300 2e-79
seq2920014 226 4e-57
seq2589201 163 4e-38
>seq2879051
Length=301
Score = 327 bits (362), Expect = 2e-87
Identities = 225/254 (89%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60
|||||||||||||||||||||| |||||||||| ||||||||||||||||||||| | ||
Sbjct 24 CGAACACATGGTTGAGCAGAAAGTCGCGGCTCAACGGGCGGTTCGGGTGCTGCAACAACA 83
Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120
|||||| | |||||||||||||||||||||||||||||||||| || || || ||||
Sbjct 84 GGCGCAACACGCGGTAATCCGAATTGCCCAGGCTGACCACCACGCCTTCGGGGCTGAGCA 143
Query 121 ATTGGCGCGCCCGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCA 180
||| |||||||||||||||||||||||||| ||||| || ||||||||||| |||||||
Sbjct 144 GTTGCCGCGCCCGGGTGTCGAGTTGCCAGCCCGCGAACCGAATGCTCGGCGCCTCATCCA 203
Query 181 GTCGCGCCCGGTCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACA 240
| ||||| ||||| ||| ||||||| ||||||||||| ||||||||||| ||||||| ||
Sbjct 204 GGCGCGCACGGTCCGGAAAACTCTGTACCCGGCGCAACACCACCTTGATGCGCACCAGCA 263
Query 241 GTTCCCGCGGGTCG 254
||| |||||||||
Sbjct 264 ATTCACGCGGGTCG 277
>seq2879052
Length=301
Score = 309 bits (342), Expect = 4e-82
Identities = 221/254 (87%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60
|||||||||||||||||||||| |||||||||| |||||| || ||||||||||| | ||
Sbjct 24 CGAACACATGGTTGAGCAGAAAGTCGCGGCTCAACGGGCGATTGGGGTGCTGCAACAACA 83
Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120
|||||| | ||||||||||||||||||| |||||||||||||| || || || ||||
Sbjct 84 GGCGCAACACGCGGTAATCCGAATTGCCGAGGCTGACCACCACGCCTTCGGGGCTGAGCA 143
Query 121 ATTGGCGCGCCCGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCA 180
|| |||||||| ||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 144 GCTGCCGCGCCCGTGTGTCGAGTTGCCAGCCGGCGAACCGGATGCTCGGCGCCTCATCCA 203
Query 181 GTCGCGCCCGGTCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACA 240
| ||||| ||||| ||| ||||||| |||||||| || ||||||||||| ||||||| ||
Sbjct 204 GGCGCGCACGGTCCGGAAAACTCTGTACCCGGCGTAACACCACCTTGATGCGCACCAGCA 263
Query 241 GTTCCCGCGGGTCG 254
||| |||||||||
Sbjct 264 ATTCACGCGGGTCG 277
>seq233749
Length=1206
Score = 300 bits (332), Expect = 2e-79
Identities = 219/254 (86%), Gaps = 0/254 (0%)
Strand=Plus/Plus
Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60
|||| ||||||||||||| ||| ||||| |||| ||| ||||||||||||||||| ||||
Sbjct 60 CGAAGACATGGTTGAGCAAAAAGTCGCGACTCAACGGCCGGTTCGGGTGCTGCAACAGCA 119
Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120
|||||||| | ||||||||||| ||||||||||| |||||||| || || |||| ||||
Sbjct 120 GGCGCAGCACACGGTAATCCGAGTTGCCCAGGCTCACCACCACGCCCTCGGGCGTGAGCA 179
Query 121 ATTGGCGCGCCCGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCA 180
|||| |||||||| |||||||| ||||||||||| ||||| || |||||||| || ||||
Sbjct 180 ATTGCCGCGCCCGTGTGTCGAGCTGCCAGCCGGCAAAACGAATACTCGGCGCCTCGTCCA 239
Query 181 GTCGCGCCCGGTCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACA 240
| ||||| ||||| ||| | |||||||||||||||| ||||||||||||||||||| ||
Sbjct 240 GCCGCGCGCGGTCCGGAAAGCTCTGCACCCGGCGCAGCACCACCTTGATCCGCACCAGCA 299
Query 241 GTTCCCGCGGGTCG 254
|| |||||||||
Sbjct 300 ACTCACGCGGGTCG 313
>seq2920014
Length=368
Score = 226 bits (250), Expect = 4e-57
Identities = 160/183 (87%), Gaps = 0/183 (0%)
Strand=Plus/Plus
Query 72 CGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCAATTGGCGCGCC 131
||||||||||| ||||||||||| |||||||| || || |||| |||||||| ||||||
Sbjct 1 CGGTAATCCGAGTTGCCCAGGCTCACCACCACGCCCTCGGGCGTGAGCAATTGCCGCGCC 60
Query 132 CGGGTGTCGAGTTGCCAGCCGGCGAAACGGATGCTCGGCGCTTCATCCAGTCGCGCCCGG 191
|| |||||||||||||||||||| || |||||||||||||| || ||||| ||||| |||
Sbjct 61 CGTGTGTCGAGTTGCCAGCCGGCAAACCGGATGCTCGGCGCCTCGTCCAGCCGCGCGCGG 120
Query 192 TCGGGACAACTCTGCACCCGGCGCAATACCACCTTGATCCGCACCAACAGTTCCCGCGGG 251
|| ||| | ||||||||||||||||| ||||| ||||||||||||| ||| || ||||||
Sbjct 121 TCCGGAAAGCTCTGCACCCGGCGCAACACCACTTTGATCCGCACCAGCAGCTCACGCGGG 180
Query 252 TCG 254
|||
Sbjct 181 TCG 183
>seq2589201
Length=179
Score = 163 bits (180), Expect = 4e-38
Identities = 116/133 (87%), Gaps = 0/133 (0%)
Strand=Plus/Plus
Query 1 CGAACACATGGTTGAGCAGAAAATCGCGGCTCAGCGGGCGGTTCGGGTGCTGCAAGAGCA 60
|||||||||||||||||| ||| ||||| |||| ||| ||||||||||||||||| | ||
Sbjct 46 CGAACACATGGTTGAGCAAAAAGTCGCGACTCAACGGCCGGTTCGGGTGCTGCAACAACA 105
Query 61 GGCGCAGCGCGCGGTAATCCGAATTGCCCAGGCTGACCACCACACCGTCCGGCGAAAGCA 120
|||| ||| ||||||||||||| ||||||||||| |||||||| || || |||| ||||
Sbjct 106 GGCGAAGCACGCGGTAATCCGAGTTGCCCAGGCTCACCACCACGCCCTCGGGCGTGAGCA 165
Query 121 ATTGGCGCGCCCG 133
|||| ||||||||
Sbjct 166 ATTGCCGCGCCCG 178
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 692249123457
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |