Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001645.1
Length=355
Score E
Sequences producing significant alignments: (Bits) Value
seq3066227 446 3e-123
seq262828 407 3e-111
seq236957 385 1e-104
seq2897123 370 2e-100
seq3084008 354 2e-95
seq1947485 176 9e-42
seq1730214 170 4e-40
seq901319 158 2e-36
seq3009211 104 5e-20
seq2866383 78.8 2e-12
>seq3066227
Length=1488
Score = 446 bits (494), Expect = 3e-123
Identities = 297/330 (90%), Gaps = 0/330 (0%)
Strand=Plus/Minus
Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTAC 62
||||| |||||||| ||||||||||| ||||| |||||||| |||||||| ||||||||
Sbjct 1418 GACGAGCTGGCGCCACAGCATGTGAAGGTGCCCTCGGGCTCATCGGTGCGTTTGGACTAC 1359
Query 63 AGCGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACA 122
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1358 AGCGAACAGCCGCCGATTCTGGCGGTGCGCCTGCAGGAATTGTTCGGGCTGGCGGACACA 1299
Query 123 CCGCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGG 182
|||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||| ||
Sbjct 1298 CCGCGCATTGCCGGTGGGCGCCAAGTGGTCAAGCTGCACCTGCTGTCCCCGGCGCGCCGG 1239
Query 183 CCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAG 242
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 1238 CCGGTGCAGGTGACGCAGGATCTGGCGAACTTCTGGCGCAGTACTTACGCCGAAGTGAAG 1179
Query 243 AAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCCGAA 302
|||||| ||||||| | || || |||||||| |||||||||||||| |||||||||||
Sbjct 1178 AAGGATTTGAAGGGAAGATACCCCAAGCATTACTGGCCGGATGATCCACTGGTGGCCGAA 1119
Query 303 GCGACGGCGCGGATCAAACCCCGTAAGTAG 332
| || || | ||||||||||| ||||||
Sbjct 1118 CCCACTGCCAGAATCAAACCCCGAAAGTAG 1089
>seq262828
Length=1537
Score = 407 bits (450), Expect = 3e-111
Identities = 287/328 (88%), Gaps = 0/328 (0%)
Strand=Plus/Minus
Query 5 CGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTACAG 64
||| |||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct 1298 CGAGCTGGCGCCGCAGCACGTGAAGGTGCCCTCGGGCTCCTCGGTGCGTTTGGACTACAG 1239
Query 65 CGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACC 124
||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||| ||
Sbjct 1238 CGAGCAGCCGCCGATTCTGGCGGTGCGCTTGCAGGAATTGTTCGGGCTGGCGGACACGCC 1179
Query 125 GCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGGCC 184
|||||||||||| |||||||||| |||||| |||||||| |||| ||| ||||| ||||
Sbjct 1178 GCGCATTGCCGGTGGGCGCCAGGCAGTCAAGCTGCACCTGTTGTCTCCGGCGCGCCGGCC 1119
Query 185 GGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAGAA 244
||||||||| || ||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 1118 GGTGCAGGTTACGCAGGACTTGGCGAACTTCTGGCGCAGTACCTACGCCGAAGTGAAGAA 1059
Query 245 GGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCCGAAGC 304
|||| |||| || | || || |||||||| |||||||| || || |||||||||||| |
Sbjct 1058 GGATTTGAAAGGAAGATACCCCAAGCATTACTGGCCGGACGACCCCTTGGTGGCCGAACC 999
Query 305 GACGGCGCGGATCAAACCCCGTAAGTAG 332
|| || |||||||||||||| ||||||
Sbjct 998 CACCGCCCGGATCAAACCCCGCAAGTAG 971
>seq236957
Length=2187
Score = 385 bits (426), Expect = 1e-104
Identities = 306/375 (82%), Gaps = 22/375 (6%)
Strand=Plus/Minus
Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGA---- 58
||||| |||||||| ||||||||||| ||||| ||||| ||||||||||||
Sbjct 2117 GACGAGCTGGCGCCACAGCATGTGAAGGTGCCCTCGGGTTCGTCGGTGCGCNNNNNNNNN 2058
Query 59 ------------------CTACAGCGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGA 100
||||||||||||||||||||| |||||||||||| |||||||
Sbjct 2057 NNNNNNNNNNNNNNNNNNCTACAGCGAACAGCCGCCGATTCTGGCGGTGCGCTTGCAGGA 1998
Query 101 ATTGTTCGGCCTGGCGGACACACCGCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCA 160
||||||||| ||||||||||||||||||||||||||||||||||| || |||||| ||||
Sbjct 1997 ATTGTTCGGGCTGGCGGACACACCGCGCATTGCCGGCGGGCGCCAAGTAGTCAAGCTGCA 1938
Query 161 CCTGCTGTCCCCGTCGCGCAGGCCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCG 220
||||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1937 CCTGCTGTCCCCGGCGCGGCGGCCGGTGCAGGTGACGCAGGATCTGGCGAACTTCTGGCG 1878
Query 221 CAGTACCTACGCCGAGGTGAAGAAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCC 280
||||| || || ||||||||||||||| ||||||| | || || ||||| ||||||||
Sbjct 1877 TAGTACGTATGCGGAGGTGAAGAAGGATTTGAAGGGAAGATACCCCAAGCACTATTGGCC 1818
Query 281 GGATGATCCGTTGGTGGCCGAAGCGACGGCGCGGATCAAACCCCGTAAGTAGCAACGACG 340
||||||||| ||||||||||| | || || | ||||||||||| || |||| || |
Sbjct 1817 GGATGATCCACTGGTGGCCGAACCCACTGCCAGAATCAAACCCCGCAAATAGCCACAAAA 1758
Query 341 GAGATCAACTGTGGG 355
| ||||||||||||
Sbjct 1757 CAAATCAACTGTGGG 1743
>seq2897123
Length=326
Score = 370 bits (410), Expect = 2e-100
Identities = 246/273 (90%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 59 CTACAGCGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGA 118
||||||||||||||||||||| |||||||||||| |||||||||||||||| ||||||||
Sbjct 326 CTACAGCGAACAGCCGCCGATTCTGGCGGTGCGCTTGCAGGAATTGTTCGGGCTGGCGGA 267
Query 119 CACACCGCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCG 178
||| ||||| |||||||| |||||||||| ||||||| ||||||||||||||||| ||||
Sbjct 266 CACGCCGCGTATTGCCGGTGGGCGCCAGGCGGTCAAGCTGCACCTGCTGTCCCCGGCGCG 207
Query 179 CAGGCCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGT 238
| ||||||||||||||||||||||||||||||||||||||||||| || || ||||||||
Sbjct 206 CCGGCCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGCACGTATGCCGAGGT 147
Query 239 GAAGAAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGC 298
||| || ||| |||||||||||||||| |||||||| ||||| ||||| ||||| |||||
Sbjct 146 GAAAAAAGATTTGAAGGGGCGGTATCCCAAGCATTACTGGCCAGATGACCCGTTAGTGGC 87
Query 299 CGAAGCGACGGCGCGGATCAAACCCCGTAAGTA 331
|||| | || || ||||||||||| || |||||
Sbjct 86 CGAACCCACCGCCCGGATCAAACCGCGCAAGTA 54
>seq3084008
Length=2839
Score = 354 bits (392), Expect = 2e-95
Identities = 249/284 (88%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 72 CCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGCGCATT 131
||||||||||| ||||||||| ||||||| ||||||| |||||||| || || ||||||
Sbjct 2838 CCGCCGATCCTCGCGGTGCGCTTGCAGGAGCTGTTCGGGCTGGCGGATACGCCACGCATT 2779
Query 132 GCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGGCCGGTGCAG 191
|||||||||||||| ||||||||||||||||||||||| || |||| |||||||||||
Sbjct 2778 GCCGGCGGGCGCCAAGTGGTCAAGTTGCACCTGCTGTCGCCTGCGCGGCGGCCGGTGCAG 2719
Query 192 GTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAGAAGGATCTG 251
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||
Sbjct 2718 GTGACGCAGGATCTGGCGAACTTCTGGCGCAGTACCTATGCCGAGGTGAAGAAGGATTTG 2659
Query 252 AAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCCGAAGCGACGGCG 311
|||||||| || || |||||||| ||||||||||| || |||||||||||||||| ||
Sbjct 2658 AAGGGGCGTTACCCCAAGCATTACTGGCCGGATGACCCCCTGGTGGCCGAAGCGACCGCC 2599
Query 312 CGGATCAAACCCCGTAAGTAGCAACGACGGAGATCAACTGTGGG 355
||||||||||||| ||||||| | | ||| ||| |||||||
Sbjct 2598 AGGATCAAACCCCGAAAGTAGCCGCCATGGAAATCCCCTGTGGG 2555
>seq1947485
Length=127
Score = 176 bits (194), Expect = 9e-42
Identities = 115/127 (91%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 7 AACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTACAGCG 66
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 1 AACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGTTCATCAGTGCGCCTGGACTACAGCG 60
Query 67 AACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGC 126
|||| ||||||||||| ||||||||| ||||||| ||||||| |||||||| || || |
Sbjct 61 AACACCCGCCGATCCTCGCGGTGCGCTTGCAGGAGCTGTTCGGGCTGGCGGATACGCCAC 120
Query 127 GCATTGC 133
|||||||
Sbjct 121 GCATTGC 127
>seq1730214
Length=127
Score = 170 bits (188), Expect = 4e-40
Identities = 114/127 (90%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 7 AACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTACAGCG 66
|||||||||||||||||||||||||||||||||| || || |||||||||||||||||||
Sbjct 127 AACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGTTCATCAGTGCGCCTGGACTACAGCG 68
Query 67 AACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGC 126
||| ||||||||||| ||||||||| ||||||| ||||||| |||||||| || || |
Sbjct 67 AACCCCCGCCGATCCTCGCGGTGCGCTTGCAGGAGCTGTTCGGGCTGGCGGATACGCCAC 8
Query 127 GCATTGC 133
|||||||
Sbjct 7 GCATTGC 1
>seq901319
Length=112
Score = 158 bits (174), Expect = 2e-36
Identities = 102/112 (91%), Gaps = 0/112 (0%)
Strand=Plus/Plus
Query 5 CGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTACAG 64
||| |||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||||
Sbjct 1 CGAGCTGGCGCCGCAGCACGTGAAGGTGCCCTCGGGCTCCTCGGTGCGTTTGGACTACAG 60
Query 65 CGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCG 116
||||||||||||||| |||||||||||| |||||||||||||||| ||||||
Sbjct 61 CGAACAGCCGCCGATTCTGGCGGTGCGCTTGCAGGAATTGTTCGGGCTGGCG 112
>seq3009211
Length=722
Score = 104 bits (114), Expect = 5e-20
Identities = 63/67 (94%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTAC 62
|| ||||||||||||||||||||||||||||||||||| || || |||||||||||||||
Sbjct 656 GAAGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGTTCATCAGTGCGCCTGGACTAC 715
Query 63 AGCGAAC 69
|||||||
Sbjct 716 AGCGAAC 722
>seq2866383
Length=286
Score = 78.8 bits (86), Expect = 2e-12
Identities = 54/61 (89%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTAC 62
||||| |||||||||||||| ||||| ||||| |||||||| |||||||| ||||||||
Sbjct 226 GACGAGCTGGCGCCGCAGCACGTGAAGGTGCCCTCGGGCTCCTCGGTGCGTTTGGACTAC 285
Query 63 A 63
|
Sbjct 286 A 286
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1001677150304
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