Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001645.1 Length=355 Score E Sequences producing significant alignments: (Bits) Value seq3066227 446 3e-123 seq262828 407 3e-111 seq236957 385 1e-104 seq2897123 370 2e-100 seq3084008 354 2e-95 seq1947485 176 9e-42 seq1730214 170 4e-40 seq901319 158 2e-36 seq3009211 104 5e-20 seq2866383 78.8 2e-12 >seq3066227 Length=1488 Score = 446 bits (494), Expect = 3e-123 Identities = 297/330 (90%), Gaps = 0/330 (0%) Strand=Plus/Minus Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTAC 62 ||||| |||||||| ||||||||||| ||||| |||||||| |||||||| |||||||| Sbjct 1418 GACGAGCTGGCGCCACAGCATGTGAAGGTGCCCTCGGGCTCATCGGTGCGTTTGGACTAC 1359 Query 63 AGCGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACA 122 ||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| Sbjct 1358 AGCGAACAGCCGCCGATTCTGGCGGTGCGCCTGCAGGAATTGTTCGGGCTGGCGGACACA 1299 Query 123 CCGCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGG 182 |||||||||||||| |||||||| ||||||||| ||||||||||||||||| ||||| || Sbjct 1298 CCGCGCATTGCCGGTGGGCGCCAAGTGGTCAAGCTGCACCTGCTGTCCCCGGCGCGCCGG 1239 Query 183 CCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAG 242 |||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 1238 CCGGTGCAGGTGACGCAGGATCTGGCGAACTTCTGGCGCAGTACTTACGCCGAAGTGAAG 1179 Query 243 AAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCCGAA 302 |||||| ||||||| | || || |||||||| |||||||||||||| ||||||||||| Sbjct 1178 AAGGATTTGAAGGGAAGATACCCCAAGCATTACTGGCCGGATGATCCACTGGTGGCCGAA 1119 Query 303 GCGACGGCGCGGATCAAACCCCGTAAGTAG 332 | || || | ||||||||||| |||||| Sbjct 1118 CCCACTGCCAGAATCAAACCCCGAAAGTAG 1089 >seq262828 Length=1537 Score = 407 bits (450), Expect = 3e-111 Identities = 287/328 (88%), Gaps = 0/328 (0%) Strand=Plus/Minus Query 5 CGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTACAG 64 ||| |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||| Sbjct 1298 CGAGCTGGCGCCGCAGCACGTGAAGGTGCCCTCGGGCTCCTCGGTGCGTTTGGACTACAG 1239 Query 65 CGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACC 124 ||| ||||||||||| |||||||||||| |||||||||||||||| ||||||||||| || Sbjct 1238 CGAGCAGCCGCCGATTCTGGCGGTGCGCTTGCAGGAATTGTTCGGGCTGGCGGACACGCC 1179 Query 125 GCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGGCC 184 |||||||||||| |||||||||| |||||| |||||||| |||| ||| ||||| |||| Sbjct 1178 GCGCATTGCCGGTGGGCGCCAGGCAGTCAAGCTGCACCTGTTGTCTCCGGCGCGCCGGCC 1119 Query 185 GGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAGAA 244 ||||||||| || ||||| ||||||||||||||||||||||||||||||| |||||||| Sbjct 1118 GGTGCAGGTTACGCAGGACTTGGCGAACTTCTGGCGCAGTACCTACGCCGAAGTGAAGAA 1059 Query 245 GGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCCGAAGC 304 |||| |||| || | || || |||||||| |||||||| || || |||||||||||| | Sbjct 1058 GGATTTGAAAGGAAGATACCCCAAGCATTACTGGCCGGACGACCCCTTGGTGGCCGAACC 999 Query 305 GACGGCGCGGATCAAACCCCGTAAGTAG 332 || || |||||||||||||| |||||| Sbjct 998 CACCGCCCGGATCAAACCCCGCAAGTAG 971 >seq236957 Length=2187 Score = 385 bits (426), Expect = 1e-104 Identities = 306/375 (82%), Gaps = 22/375 (6%) Strand=Plus/Minus Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGA---- 58 ||||| |||||||| ||||||||||| ||||| ||||| |||||||||||| Sbjct 2117 GACGAGCTGGCGCCACAGCATGTGAAGGTGCCCTCGGGTTCGTCGGTGCGCNNNNNNNNN 2058 Query 59 ------------------CTACAGCGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGA 100 ||||||||||||||||||||| |||||||||||| ||||||| Sbjct 2057 NNNNNNNNNNNNNNNNNNCTACAGCGAACAGCCGCCGATTCTGGCGGTGCGCTTGCAGGA 1998 Query 101 ATTGTTCGGCCTGGCGGACACACCGCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCA 160 ||||||||| ||||||||||||||||||||||||||||||||||| || |||||| |||| Sbjct 1997 ATTGTTCGGGCTGGCGGACACACCGCGCATTGCCGGCGGGCGCCAAGTAGTCAAGCTGCA 1938 Query 161 CCTGCTGTCCCCGTCGCGCAGGCCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCG 220 ||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||| Sbjct 1937 CCTGCTGTCCCCGGCGCGGCGGCCGGTGCAGGTGACGCAGGATCTGGCGAACTTCTGGCG 1878 Query 221 CAGTACCTACGCCGAGGTGAAGAAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCC 280 ||||| || || ||||||||||||||| ||||||| | || || ||||| |||||||| Sbjct 1877 TAGTACGTATGCGGAGGTGAAGAAGGATTTGAAGGGAAGATACCCCAAGCACTATTGGCC 1818 Query 281 GGATGATCCGTTGGTGGCCGAAGCGACGGCGCGGATCAAACCCCGTAAGTAGCAACGACG 340 ||||||||| ||||||||||| | || || | ||||||||||| || |||| || | Sbjct 1817 GGATGATCCACTGGTGGCCGAACCCACTGCCAGAATCAAACCCCGCAAATAGCCACAAAA 1758 Query 341 GAGATCAACTGTGGG 355 | |||||||||||| Sbjct 1757 CAAATCAACTGTGGG 1743 >seq2897123 Length=326 Score = 370 bits (410), Expect = 2e-100 Identities = 246/273 (90%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 59 CTACAGCGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGA 118 ||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||| Sbjct 326 CTACAGCGAACAGCCGCCGATTCTGGCGGTGCGCTTGCAGGAATTGTTCGGGCTGGCGGA 267 Query 119 CACACCGCGCATTGCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCG 178 ||| ||||| |||||||| |||||||||| ||||||| ||||||||||||||||| |||| Sbjct 266 CACGCCGCGTATTGCCGGTGGGCGCCAGGCGGTCAAGCTGCACCTGCTGTCCCCGGCGCG 207 Query 179 CAGGCCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGT 238 | ||||||||||||||||||||||||||||||||||||||||||| || || |||||||| Sbjct 206 CCGGCCGGTGCAGGTGACCCAGGATCTGGCGAACTTCTGGCGCAGCACGTATGCCGAGGT 147 Query 239 GAAGAAGGATCTGAAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGC 298 ||| || ||| |||||||||||||||| |||||||| ||||| ||||| ||||| ||||| Sbjct 146 GAAAAAAGATTTGAAGGGGCGGTATCCCAAGCATTACTGGCCAGATGACCCGTTAGTGGC 87 Query 299 CGAAGCGACGGCGCGGATCAAACCCCGTAAGTA 331 |||| | || || ||||||||||| || ||||| Sbjct 86 CGAACCCACCGCCCGGATCAAACCGCGCAAGTA 54 >seq3084008 Length=2839 Score = 354 bits (392), Expect = 2e-95 Identities = 249/284 (88%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 72 CCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGCGCATT 131 ||||||||||| ||||||||| ||||||| ||||||| |||||||| || || |||||| Sbjct 2838 CCGCCGATCCTCGCGGTGCGCTTGCAGGAGCTGTTCGGGCTGGCGGATACGCCACGCATT 2779 Query 132 GCCGGCGGGCGCCAGGTGGTCAAGTTGCACCTGCTGTCCCCGTCGCGCAGGCCGGTGCAG 191 |||||||||||||| ||||||||||||||||||||||| || |||| ||||||||||| Sbjct 2778 GCCGGCGGGCGCCAAGTGGTCAAGTTGCACCTGCTGTCGCCTGCGCGGCGGCCGGTGCAG 2719 Query 192 GTGACCCAGGATCTGGCGAACTTCTGGCGCAGTACCTACGCCGAGGTGAAGAAGGATCTG 251 ||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || Sbjct 2718 GTGACGCAGGATCTGGCGAACTTCTGGCGCAGTACCTATGCCGAGGTGAAGAAGGATTTG 2659 Query 252 AAGGGGCGGTATCCGAAGCATTATTGGCCGGATGATCCGTTGGTGGCCGAAGCGACGGCG 311 |||||||| || || |||||||| ||||||||||| || |||||||||||||||| || Sbjct 2658 AAGGGGCGTTACCCCAAGCATTACTGGCCGGATGACCCCCTGGTGGCCGAAGCGACCGCC 2599 Query 312 CGGATCAAACCCCGTAAGTAGCAACGACGGAGATCAACTGTGGG 355 ||||||||||||| ||||||| | | ||| ||| ||||||| Sbjct 2598 AGGATCAAACCCCGAAAGTAGCCGCCATGGAAATCCCCTGTGGG 2555 >seq1947485 Length=127 Score = 176 bits (194), Expect = 9e-42 Identities = 115/127 (91%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 7 AACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTACAGCG 66 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 1 AACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGTTCATCAGTGCGCCTGGACTACAGCG 60 Query 67 AACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGC 126 |||| ||||||||||| ||||||||| ||||||| ||||||| |||||||| || || | Sbjct 61 AACACCCGCCGATCCTCGCGGTGCGCTTGCAGGAGCTGTTCGGGCTGGCGGATACGCCAC 120 Query 127 GCATTGC 133 ||||||| Sbjct 121 GCATTGC 127 >seq1730214 Length=127 Score = 170 bits (188), Expect = 4e-40 Identities = 114/127 (90%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 7 AACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTACAGCG 66 |||||||||||||||||||||||||||||||||| || || ||||||||||||||||||| Sbjct 127 AACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGTTCATCAGTGCGCCTGGACTACAGCG 68 Query 67 AACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCGGACACACCGC 126 ||| ||||||||||| ||||||||| ||||||| ||||||| |||||||| || || | Sbjct 67 AACCCCCGCCGATCCTCGCGGTGCGCTTGCAGGAGCTGTTCGGGCTGGCGGATACGCCAC 8 Query 127 GCATTGC 133 ||||||| Sbjct 7 GCATTGC 1 >seq901319 Length=112 Score = 158 bits (174), Expect = 2e-36 Identities = 102/112 (91%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 5 CGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTACAG 64 ||| |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||||| Sbjct 1 CGAGCTGGCGCCGCAGCACGTGAAGGTGCCCTCGGGCTCCTCGGTGCGTTTGGACTACAG 60 Query 65 CGAACAGCCGCCGATCCTGGCGGTGCGCCTGCAGGAATTGTTCGGCCTGGCG 116 ||||||||||||||| |||||||||||| |||||||||||||||| |||||| Sbjct 61 CGAACAGCCGCCGATTCTGGCGGTGCGCTTGCAGGAATTGTTCGGGCTGGCG 112 >seq3009211 Length=722 Score = 104 bits (114), Expect = 5e-20 Identities = 63/67 (94%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTAC 62 || ||||||||||||||||||||||||||||||||||| || || ||||||||||||||| Sbjct 656 GAAGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGTTCATCAGTGCGCCTGGACTAC 715 Query 63 AGCGAAC 69 ||||||| Sbjct 716 AGCGAAC 722 >seq2866383 Length=286 Score = 78.8 bits (86), Expect = 2e-12 Identities = 54/61 (89%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 3 GACGAACTGGCGCCGCAGCATGTGAAAGTGCCGTCGGGCTCGTCGGTGCGCCTGGACTAC 62 ||||| |||||||||||||| ||||| ||||| |||||||| |||||||| |||||||| Sbjct 226 GACGAGCTGGCGCCGCAGCACGTGAAGGTGCCCTCGGGCTCCTCGGTGCGTTTGGACTAC 285 Query 63 A 63 | Sbjct 286 A 286 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1001677150304