Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001651.1 Length=155 Score E Sequences producing significant alignments: (Bits) Value seq2845283 181 8e-44 seq2852430 178 1e-42 seq3083397 176 3e-42 >seq2845283 Length=265 Score = 181 bits (200), Expect = 8e-44 Identities = 134/155 (86%), Gaps = 1/155 (1%) Strand=Plus/Plus Query 1 CCGACCTTCGTGCGCCATGGCAATGCCTTGATCTACTCTATTTCCGGCAGGCCAATGGCC 60 ||||||||||||||||||||||| ||||||| || |||||||||||||||| |||| Sbjct 53 CCGACCTTCGTGCGCCATGGCAAAACCTTGATTTAA-CTATTTCCGGCAGGCCTGAGGCC 111 Query 61 GCTGACATTACTTCTTGATGACACCCACTATGACCGATATCCCTGCCGACCTGCGCTATG 120 ||||||||| |||||||| ||||| ||||||| ||||||||||||||||||||| | || Sbjct 112 GCTGACATTTCTTCTTGAGGACACAGACTATGAGCGATATCCCTGCCGACCTGCGTTTTG 171 Query 121 CCGATAGTCCCCAATGGGCCCGTCTGGACGCTGAC 155 |||| |||| | | |||||||||||||| || ||| Sbjct 172 CCGAAAGTCACGAGTGGGCCCGTCTGGAAGCCGAC 206 >seq2852430 Length=272 Score = 178 bits (196), Expect = 1e-42 Identities = 133/155 (86%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 1 CCGACCTTCGTGCGCCATGGCAATGCCTTGATCTACTCTATTTCCGGCAGGCCAATGGCC 60 ||||||||||| ||||||||||| |||||||||| |||||||||||||||| | |||| Sbjct 220 CCGACCTTCGTACGCCATGGCAAAACCTTGATCTAA-CTATTTCCGGCAGGCCGAAGGCC 162 Query 61 GCTGACATTACTTCTTGATGACACCCACTATGACCGATATCCCTGCCGACCTGCGCTATG 120 ||||||||| |||||||| ||||| | ||||| ||||||||| || |||||||| | || Sbjct 161 GCTGACATTTCTTCTTGAGGACACAGATTATGAGCGATATCCCAGCTGACCTGCGTTTTG 102 Query 121 CCGATAGTCCCCAATGGGCCCGTCTGGACGCTGAC 155 |||| |||| | |||||||||||||||| || ||| Sbjct 101 CCGAAAGTCACGAATGGGCCCGTCTGGAAGCCGAC 67 >seq3083397 Length=2697 Score = 176 bits (194), Expect = 3e-42 Identities = 134/156 (86%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 1 CCGACCTTCGTGCGCCATGGCAATGCCTTGATCTACTCTATTT-CCGGCAGGCCAATGGC 59 ||||||||||| ||||||||||| |||||||||| |||||| ||||||||||| |||| Sbjct 1788 CCGACCTTCGTCCGCCATGGCAAAACCTTGATCTAA-CTATTTTCCGGCAGGCCACTGGC 1730 Query 60 CGCTGACATTACTTCTTGATGACACCCACTATGACCGATATCCCTGCCGACCTGCGCTAT 119 |||||||||| |||||||| ||||| ||||||| | ||||||||||||||||||| | | Sbjct 1729 CGCTGACATTTCTTCTTGAGGACACAGACTATGAGCAATATCCCTGCCGACCTGCGTTTT 1670 Query 120 GCCGATAGTCCCCAATGGGCCCGTCTGGACGCTGAC 155 ||||| |||| | |||||||||||||| || ||| Sbjct 1669 GCCGAAAGTCATGAGTGGGCCCGTCTGGAAGCCGAC 1634 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384927763716