Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001671.1 Length=306 Score E Sequences producing significant alignments: (Bits) Value seq64585 426 3e-117 seq3040737 358 1e-96 seq2821159 269 5e-70 seq2606465 224 2e-56 seq2606464 221 2e-55 seq2801811 206 5e-51 seq2570960 129 1e-27 seq2679115 95.1 2e-17 seq2844962 93.3 7e-17 >seq64585 Length=568 Score = 426 bits (472), Expect = 3e-117 Identities = 278/306 (91%), Gaps = 0/306 (0%) Strand=Plus/Minus Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60 |||||| |||||||||||| ||||| || || |||||||| || |||||||||| ||||| Sbjct 496 CGAGGGCCTCAAGCGCGACAACCTGTTGAGCGCCACCACCGGCATCAAGGTGGAACTCTA 437 Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCT 120 ||||||| |||||||||| ||||||||||| ||||||||||||||| ||||||||||||| Sbjct 436 TGGCTCGCTGGGCGCCACCGGCAAAGGCCATGGCAGCGACAAGGCCGTGTTGCTGGGCCT 377 Query 121 GGAAGGCGAACACCCCGACACCGTGAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGAT 180 ||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| || Sbjct 376 GGAAGGCGAACACCCGGACACCGTGAACACTGAAACCGTGGCTGCACGCCTGGCGCAAAT 317 Query 181 GCGCAAGGACGGCCGCCTGAATTTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGA 240 ||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||| Sbjct 316 GCGCAGCGACGGCCGCTTGAACCTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGA 257 Query 241 ACACCTGGCGATGATCCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGC 300 ||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| || Sbjct 256 ACATTTGGCGATGATTCGCAAACCCCTCGCCTACCATCCCAACGGCATGATTTTTCGGGC 197 Query 301 TTTCGA 306 ||||| Sbjct 196 CTTCGA 191 >seq3040737 Length=1016 Score = 358 bits (396), Expect = 1e-96 Identities = 221/236 (94%), Gaps = 0/236 (0%) Strand=Plus/Minus Query 71 GGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCTGGAAGGCGAA 130 |||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 1012 GGCGCCACCGGCAAAGGCCACGGCAGCGACAAGGCCGTGTTGCTGGGCCTGGAAGGCGAG 953 Query 131 CACCCCGACACCGTGAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGATGCGCAAGGAC 190 ||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| ||| Sbjct 952 CACCCGGACACCGTGAACACCGAAACCGTGGCCTCACGCCTGGCGCAGATGCGCAGCGAC 893 Query 191 GGCCGCCTGAATTTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGAACACCTGGCG 250 |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 892 GGCCGCCTCAACCTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGAACACCTGGCG 833 Query 251 ATGATCCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGCTTTCGA 306 ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 832 ATGATTCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGCCTTCGA 777 >seq2821159 Length=247 Score = 269 bits (298), Expect = 5e-70 Identities = 175/192 (91%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 115 GGGCCTGGAAGGCGAACACCCCGACACCGTGAATACCGAAACCGTGGCTGCCCGCCTGGC 174 ||||||||||||||||||||| ||||||||||| || |||||||||||||| |||||||| Sbjct 247 GGGCCTGGAAGGCGAACACCCGGACACCGTGAACACTGAAACCGTGGCTGCACGCCTGGC 188 Query 175 GCAGATGCGCAAGGACGGCCGCCTGAATTTGCTCGGTGAACACAGCATTGCGTTCAACGA 234 ||||||||||| ||||||||| |||| ||||||| ||||||||||| ||||||||||| Sbjct 187 GCAGATGCGCAGCGACGGCCGCTTGAACCTGCTCGGCGAACACAGCATCGCGTTCAACGA 128 Query 235 GAAAGAACACCTGGCGATGATCCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTT 294 ||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| || Sbjct 127 GAAAGAACACCTGGCGATGATTCGCAAACCGCTGGCCTACCATCCCAACGGCATGATTTT 68 Query 295 TCGTGCTTTCGA 306 ||||| ||||| Sbjct 67 CCGTGCCTTCGA 56 >seq2606465 Length=181 Score = 224 bits (248), Expect = 2e-56 Identities = 156/177 (88%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 25 GCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTATGGCTCGTTGGGCGCCACTGGCAA 84 |||| |||||||| | || |||||||||| ||||||||||| |||||||||| ||||| Sbjct 1 GCTGAACACCACCAGCGGCATCAAGGTGGAACTCTATGGCTCACTGGGCGCCACCGGCAA 60 Query 85 AGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCTGGAAGGCGAACACCCCGACACCGT 144 |||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||| Sbjct 61 AGGCCACGGCAGCGACAAAGCCGTGTTGCTGGGCCTGGAAGGCGAACACCCGGACACCGT 120 Query 145 GAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGATGCGCAAGGACGGCCGCCTGAA 201 ||||||||||||||| || || ||||| ||||| ||||||| ||||| ||| |||| Sbjct 121 GAATACCGAAACCGTCGCCGCACGCCTTGCGCAAATGCGCAGTGACGGTCGCTTGAA 177 >seq2606464 Length=181 Score = 221 bits (244), Expect = 2e-55 Identities = 155/177 (88%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 25 GCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTATGGCTCGTTGGGCGCCACTGGCAA 84 |||| |||||||| | || |||||||||| ||||||||||| |||||||||| ||||| Sbjct 1 GCTGAACACCACCAGCGGCATCAAGGTGGAACTCTATGGCTCACTGGGCGCCACCGGCAA 60 Query 85 AGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCTGGAAGGCGAACACCCCGACACCGT 144 ||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| || Sbjct 61 AGGTCACGGCAGCGACAAGGCCGTGTTGCTGGGCCTGGAAGGCGAACACCCGGACACAGT 120 Query 145 GAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGATGCGCAAGGACGGCCGCCTGAA 201 ||||||||||||||| || || ||||| ||||| ||||||| ||||| ||| |||| Sbjct 121 GAATACCGAAACCGTCGCCGCACGCCTTGCGCAAATGCGCAGTGACGGTCGCTTGAA 177 >seq2801811 Length=236 Score = 206 bits (228), Expect = 5e-51 Identities = 144/164 (88%), Gaps = 0/164 (0%) Strand=Plus/Minus Query 143 GTGAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGATGCGCAAGGACGGCCGCCTGAAT 202 ||||||||||||||||| || || ||||| ||||| ||||||| ||||| ||| |||| Sbjct 236 GTGAATACCGAAACCGTCGCCGCACGCCTTGCGCAAATGCGCAGTGACGGTCGCTTGAAC 177 Query 203 TTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGAACACCTGGCGATGATCCGCAAA 262 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 176 CTGCTCGGCGAACACAGCATTGCGTTCAACGAGAAAGAACACCTGGCGATGATCCGAAAG 117 Query 263 CCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGCTTTCGA 306 || ||||||||||||||||| |||||||| ||||| || || || Sbjct 116 CCTCTCGCCTACCATCCCAATGGCATGATTTTTCGCGCCTTTGA 73 >seq2570960 Length=176 Score = 129 bits (142), Expect = 1e-27 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60 ||| || |||||||||||| ||||| || || |||||||| || |||||||||| ||||| Sbjct 104 CGAAGGCCTCAAGCGCGACAACCTGTTGAGCGCCACCACCGGCATCAAGGTGGAACTCTA 45 Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGG 104 |||||| | |||||||| ||||||||||||||||||||||||| Sbjct 44 TGGCTCCCTCGGCGCCACCGGCAAAGGCCACGGCAGCGACAAGG 1 >seq2679115 Length=192 Score = 95.1 bits (104), Expect = 2e-17 Identities = 73/87 (84%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60 ||| || ||||| || ||| |||||||| |||||||| | || |||||||||| ||||| Sbjct 106 CGAAGGCCTCAAACGTGACAACCTGCTGAACACCACCAGCGGCATCAAGGTGGAACTCTA 165 Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGG 87 |||||| |||||||||| |||||||| Sbjct 166 TGGCTCACTGGGCGCCACCGGCAAAGG 192 >seq2844962 Length=265 Score = 93.3 bits (102), Expect = 7e-17 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60 ||| || |||||||| || ||||| ||||| | || |||||||||| ||||| Sbjct 104 CGAAGGCCTCAAGCGTGATGCGCTGCTCAATGCCACCCACCGCATCAAGGTGGAACTCTA 45 Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGG 104 |||||| | |||||||| ||||||||||||||||||||||||| Sbjct 44 TGGCTCCCTCGGCGCCACCGGCAAAGGCCACGGCAGCGACAAGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 849719935552