Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001671.1
Length=306
Score E
Sequences producing significant alignments: (Bits) Value
seq64585 426 3e-117
seq3040737 358 1e-96
seq2821159 269 5e-70
seq2606465 224 2e-56
seq2606464 221 2e-55
seq2801811 206 5e-51
seq2570960 129 1e-27
seq2679115 95.1 2e-17
seq2844962 93.3 7e-17
>seq64585
Length=568
Score = 426 bits (472), Expect = 3e-117
Identities = 278/306 (91%), Gaps = 0/306 (0%)
Strand=Plus/Minus
Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60
|||||| |||||||||||| ||||| || || |||||||| || |||||||||| |||||
Sbjct 496 CGAGGGCCTCAAGCGCGACAACCTGTTGAGCGCCACCACCGGCATCAAGGTGGAACTCTA 437
Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCT 120
||||||| |||||||||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 436 TGGCTCGCTGGGCGCCACCGGCAAAGGCCATGGCAGCGACAAGGCCGTGTTGCTGGGCCT 377
Query 121 GGAAGGCGAACACCCCGACACCGTGAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGAT 180
||||||||||||||| ||||||||||| || |||||||||||||| ||||||||||| ||
Sbjct 376 GGAAGGCGAACACCCGGACACCGTGAACACTGAAACCGTGGCTGCACGCCTGGCGCAAAT 317
Query 181 GCGCAAGGACGGCCGCCTGAATTTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGA 240
||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||||
Sbjct 316 GCGCAGCGACGGCCGCTTGAACCTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGA 257
Query 241 ACACCTGGCGATGATCCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGC 300
||| |||||||||| ||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 256 ACATTTGGCGATGATTCGCAAACCCCTCGCCTACCATCCCAACGGCATGATTTTTCGGGC 197
Query 301 TTTCGA 306
|||||
Sbjct 196 CTTCGA 191
>seq3040737
Length=1016
Score = 358 bits (396), Expect = 1e-96
Identities = 221/236 (94%), Gaps = 0/236 (0%)
Strand=Plus/Minus
Query 71 GGCGCCACTGGCAAAGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCTGGAAGGCGAA 130
|||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1012 GGCGCCACCGGCAAAGGCCACGGCAGCGACAAGGCCGTGTTGCTGGGCCTGGAAGGCGAG 953
Query 131 CACCCCGACACCGTGAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGATGCGCAAGGAC 190
||||| ||||||||||| |||||||||||||| | ||||||||||||||||||| |||
Sbjct 952 CACCCGGACACCGTGAACACCGAAACCGTGGCCTCACGCCTGGCGCAGATGCGCAGCGAC 893
Query 191 GGCCGCCTGAATTTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGAACACCTGGCG 250
|||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 892 GGCCGCCTCAACCTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGAACACCTGGCG 833
Query 251 ATGATCCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGCTTTCGA 306
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 832 ATGATTCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGCCTTCGA 777
>seq2821159
Length=247
Score = 269 bits (298), Expect = 5e-70
Identities = 175/192 (91%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 115 GGGCCTGGAAGGCGAACACCCCGACACCGTGAATACCGAAACCGTGGCTGCCCGCCTGGC 174
||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||||||
Sbjct 247 GGGCCTGGAAGGCGAACACCCGGACACCGTGAACACTGAAACCGTGGCTGCACGCCTGGC 188
Query 175 GCAGATGCGCAAGGACGGCCGCCTGAATTTGCTCGGTGAACACAGCATTGCGTTCAACGA 234
||||||||||| ||||||||| |||| ||||||| ||||||||||| |||||||||||
Sbjct 187 GCAGATGCGCAGCGACGGCCGCTTGAACCTGCTCGGCGAACACAGCATCGCGTTCAACGA 128
Query 235 GAAAGAACACCTGGCGATGATCCGCAAACCCCTCGCCTACCATCCCAACGGCATGATCTT 294
||||||||||||||||||||| |||||||| || ||||||||||||||||||||||| ||
Sbjct 127 GAAAGAACACCTGGCGATGATTCGCAAACCGCTGGCCTACCATCCCAACGGCATGATTTT 68
Query 295 TCGTGCTTTCGA 306
||||| |||||
Sbjct 67 CCGTGCCTTCGA 56
>seq2606465
Length=181
Score = 224 bits (248), Expect = 2e-56
Identities = 156/177 (88%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 25 GCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTATGGCTCGTTGGGCGCCACTGGCAA 84
|||| |||||||| | || |||||||||| ||||||||||| |||||||||| |||||
Sbjct 1 GCTGAACACCACCAGCGGCATCAAGGTGGAACTCTATGGCTCACTGGGCGCCACCGGCAA 60
Query 85 AGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCTGGAAGGCGAACACCCCGACACCGT 144
|||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||
Sbjct 61 AGGCCACGGCAGCGACAAAGCCGTGTTGCTGGGCCTGGAAGGCGAACACCCGGACACCGT 120
Query 145 GAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGATGCGCAAGGACGGCCGCCTGAA 201
||||||||||||||| || || ||||| ||||| ||||||| ||||| ||| ||||
Sbjct 121 GAATACCGAAACCGTCGCCGCACGCCTTGCGCAAATGCGCAGTGACGGTCGCTTGAA 177
>seq2606464
Length=181
Score = 221 bits (244), Expect = 2e-55
Identities = 155/177 (88%), Gaps = 0/177 (0%)
Strand=Plus/Plus
Query 25 GCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTATGGCTCGTTGGGCGCCACTGGCAA 84
|||| |||||||| | || |||||||||| ||||||||||| |||||||||| |||||
Sbjct 1 GCTGAACACCACCAGCGGCATCAAGGTGGAACTCTATGGCTCACTGGGCGCCACCGGCAA 60
Query 85 AGGCCACGGCAGCGACAAGGCCATGTTGCTGGGCCTGGAAGGCGAACACCCCGACACCGT 144
||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||| ||
Sbjct 61 AGGTCACGGCAGCGACAAGGCCGTGTTGCTGGGCCTGGAAGGCGAACACCCGGACACAGT 120
Query 145 GAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGATGCGCAAGGACGGCCGCCTGAA 201
||||||||||||||| || || ||||| ||||| ||||||| ||||| ||| ||||
Sbjct 121 GAATACCGAAACCGTCGCCGCACGCCTTGCGCAAATGCGCAGTGACGGTCGCTTGAA 177
>seq2801811
Length=236
Score = 206 bits (228), Expect = 5e-51
Identities = 144/164 (88%), Gaps = 0/164 (0%)
Strand=Plus/Minus
Query 143 GTGAATACCGAAACCGTGGCTGCCCGCCTGGCGCAGATGCGCAAGGACGGCCGCCTGAAT 202
||||||||||||||||| || || ||||| ||||| ||||||| ||||| ||| ||||
Sbjct 236 GTGAATACCGAAACCGTCGCCGCACGCCTTGCGCAAATGCGCAGTGACGGTCGCTTGAAC 177
Query 203 TTGCTCGGTGAACACAGCATTGCGTTCAACGAGAAAGAACACCTGGCGATGATCCGCAAA 262
||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 176 CTGCTCGGCGAACACAGCATTGCGTTCAACGAGAAAGAACACCTGGCGATGATCCGAAAG 117
Query 263 CCCCTCGCCTACCATCCCAACGGCATGATCTTTCGTGCTTTCGA 306
|| ||||||||||||||||| |||||||| ||||| || || ||
Sbjct 116 CCTCTCGCCTACCATCCCAATGGCATGATTTTTCGCGCCTTTGA 73
>seq2570960
Length=176
Score = 129 bits (142), Expect = 1e-27
Identities = 91/104 (88%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60
||| || |||||||||||| ||||| || || |||||||| || |||||||||| |||||
Sbjct 104 CGAAGGCCTCAAGCGCGACAACCTGTTGAGCGCCACCACCGGCATCAAGGTGGAACTCTA 45
Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGG 104
|||||| | |||||||| |||||||||||||||||||||||||
Sbjct 44 TGGCTCCCTCGGCGCCACCGGCAAAGGCCACGGCAGCGACAAGG 1
>seq2679115
Length=192
Score = 95.1 bits (104), Expect = 2e-17
Identities = 73/87 (84%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60
||| || ||||| || ||| |||||||| |||||||| | || |||||||||| |||||
Sbjct 106 CGAAGGCCTCAAACGTGACAACCTGCTGAACACCACCAGCGGCATCAAGGTGGAACTCTA 165
Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGG 87
|||||| |||||||||| ||||||||
Sbjct 166 TGGCTCACTGGGCGCCACCGGCAAAGG 192
>seq2844962
Length=265
Score = 93.3 bits (102), Expect = 7e-17
Identities = 83/104 (80%), Gaps = 0/104 (0%)
Strand=Plus/Minus
Query 1 CGAGGGTCTCAAGCGCGACCACCTGCTGGGCACCACCACCTGCGTCAAGGTGGAGCTCTA 60
||| || |||||||| || ||||| ||||| | || |||||||||| |||||
Sbjct 104 CGAAGGCCTCAAGCGTGATGCGCTGCTCAATGCCACCCACCGCATCAAGGTGGAACTCTA 45
Query 61 TGGCTCGTTGGGCGCCACTGGCAAAGGCCACGGCAGCGACAAGG 104
|||||| | |||||||| |||||||||||||||||||||||||
Sbjct 44 TGGCTCCCTCGGCGCCACCGGCAAAGGCCACGGCAGCGACAAGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 849719935552
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |