Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001674.1 Length=313 Score E Sequences producing significant alignments: (Bits) Value seq166989 372 5e-101 seq3072494 358 1e-96 seq2980007 358 1e-96 seq2686082 242 6e-62 seq188253 145 1e-32 seq2752331 132 8e-29 seq2418551 129 1e-27 seq2418550 125 1e-26 >seq166989 Length=2943 Score = 372 bits (412), Expect = 5e-101 Identities = 268/309 (87%), Gaps = 0/309 (0%) Strand=Plus/Plus Query 2 GAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCT 61 |||||||| || | |||||||| |||||||||||||| || || ||||||||||| Sbjct 260 GAGCTGGACGCTGTGGTTGAAATCGCAGTTGAAGACGAAGAAATCGTTCAGCGTATTGCG 319 Query 62 GGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAG 121 ||||||||||| || |||| ||||||||||||||| |||| ||||||||| ||||| ||| Sbjct 320 GGCCGTCGCGTTCACGAAGGCTCGGGCCGCGTGTATCACATCGTCTACAACCCGCCGAAG 379 Query 122 GTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAA 181 |||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 380 GTTGAAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGTAAGGACGACACCGAA 439 Query 182 GAAACCGTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTC 241 |||||||| || || |||||||| || ||||||||||| ||||||||||||||||| ||| Sbjct 440 GAAACCGTGCGCCATCGCCTGTCGGTCTACCATTCGCAGACCAAGCCGCTGGTGGATTTC 499 Query 242 TACCAGAAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGC 301 ||||||||||| | |||||||| |||||||| |||||||||||| | ||||| || Sbjct 500 TACCAGAAGCTTTCGGCTGCCCAAGGCAAGCCGAAGTACAGCCACATCCCTGGCGTGGGT 559 Query 302 TCGGTATAA 310 |||||| || Sbjct 560 TCGGTAGAA 568 >seq3072494 Length=1699 Score = 358 bits (396), Expect = 1e-96 Identities = 263/306 (86%), Gaps = 0/306 (0%) Strand=Plus/Plus Query 1 CGAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGC 60 |||| |||| | || |||||||||||||||| |||||||| || |||||||| ||||| Sbjct 112 CGAGTTGGACGCCGTGGTGGAAATCGCCGTTGAGGACGAAGAAATCGTCCAGCGCATTGC 171 Query 61 TGGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAA 120 || |||||||| || |||| ||||||||||||||||||| ||||||||| ||||| || Sbjct 172 CGGTCGTCGCGTTCACGAAGGCTCGGGCCGCGTGTACCACGTCGTCTACAACCCGCCGAA 231 Query 121 GGTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGA 180 ||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||| ||||| Sbjct 232 GGTTGAAGGCAAGGACGATGTCACCGGTGAAAACCTGGTACAGCGCAAAGACGATACCGA 291 Query 181 AGAAACCGTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTT 240 ||||||||| ||||| |||||||| || |||||||| || |||||||||||||||||||| Sbjct 292 AGAAACCGTGCGTCATCGCCTGTCGGTCTACCATTCCCAGACCAAGCCGCTGGTGGACTT 351 Query 241 CTACCAGAAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGG 300 ||||||||||||| | ||||||||||||||||| || |||||||| | ||||| || Sbjct 352 CTACCAGAAGCTGTCCGCTGCCCAGGGCAAGCCGAAATACAGCCATATCCCTGGCGTCGG 411 Query 301 CTCGGT 306 ||| || Sbjct 412 CTCCGT 417 >seq2980007 Length=558 Score = 358 bits (396), Expect = 1e-96 Identities = 252/288 (88%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 20 GAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGTCGCGTACAAGAA 79 |||||||| |||||||||||||| || || ||||||||||| ||||||||||| || ||| Sbjct 149 GAAATCGCAGTTGAAGACGAAGAAATCGTTCAGCGTATTGCCGGCCGTCGCGTTCACGAA 208 Query 80 GCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCAGGCAAGGACGAT 139 | |||||||||||||||||||| ||||||||| ||||||||||||| |||||| ||||| Sbjct 209 GGCTCGGGCCGCGTGTACCACATCGTCTACAACCCGCCAAAGGTTGAAGGCAAAGACGAC 268 Query 140 GTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACCGTTCGTCACCGC 199 |||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| ||| Sbjct 269 GTGACCGGGGAAGACCTGGTGCAGCGCAAGGACGACACCGAAGAAACCGTGCGTCATCGC 328 Query 200 CTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGGCTGCT 259 ||||| || || ||||| || ||||||||||||||||| |||||||||||||| | | | Sbjct 329 CTGTCGGTCTATCATTCACAGACCAAGCCGCTGGTGGATTTCTACCAGAAGCTTTCGGTT 388 Query 260 GCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGTA 307 ||||| |||||||| |||||||||||| | ||||| || |||||| Sbjct 389 GCCCAAGGCAAGCCGAAGTACAGCCACATCCCTGGCGTGGGTTCGGTA 436 >seq2686082 Length=194 Score = 242 bits (268), Expect = 6e-62 Identities = 170/194 (88%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 65 CGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTT 124 ||||| || || ||||||||||||||||| ||||||| ||||||||| ||||| || || Sbjct 1 CGTCGTGTTCACGAAGCCTCGGGCCGCGTTTACCACATCGTCTACAACCCGCCTAAAGTG 60 Query 125 GCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAA 184 || |||||||||||||| |||||||| |||||||| ||||| || |||||||| |||||| Sbjct 61 GCTGGCAAGGACGATGTCACCGGCGACGACCTGGTGCAGCGTAAAGACGACACTGAAGAA 120 Query 185 ACCGTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTAC 244 ||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| |||||| Sbjct 121 ACCGTGCGTCATCGCCTGTCGGTCTACCATTCGCAGACCAAGCCGCTGGTGGATTTCTAC 180 Query 245 CAGAAGCTGGCTGC 258 |||||| || |||| Sbjct 181 CAGAAGTTGTCTGC 194 >seq188253 Length=346 Score = 145 bits (160), Expect = 1e-32 Identities = 107/125 (86%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 2 GAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCT 61 ||||||||| | || | |||||||| |||||||||||||| || ||||||||||| ||| Sbjct 221 GAGCTGGATGCCGTGGTTGAAATCGCAGTTGAAGACGAAGAAATCGTCCAGCGTATCGCT 280 Query 62 GGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAG 121 |||||||| || || ||||||||||||||||| ||||||| ||||||||| ||||| || Sbjct 281 GGCCGTCGTGTTCACGAAGCCTCGGGCCGCGTTTACCACATCGTCTACAACCCGCCTAAA 340 Query 122 GTTGC 126 || || Sbjct 341 GTGGC 345 >seq2752331 Length=214 Score = 132 bits (146), Expect = 8e-29 Identities = 105/126 (83%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 1 CGAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGC 60 |||||||||| | || | |||||||| |||||||||||||| || || |||||||| || Sbjct 127 CGAGCTGGATGCCGTGGTTGAAATCGCAGTTGAAGACGAAGAAATCGTTCAGCGTATCGC 68 Query 61 TGGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAA 120 || ||||| || || ||||||||||||||||| ||||||| ||||||||| ||||| || Sbjct 67 CGGTCGTCGTGTTCACGAAGCCTCGGGCCGCGTTTACCACATCGTCTACAACCCGCCTAA 8 Query 121 GGTTGC 126 || || Sbjct 7 AGTGGC 2 >seq2418551 Length=154 Score = 129 bits (142), Expect = 1e-27 Identities = 97/114 (85%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 197 CGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGGCT 256 |||||||| || ||||||||||| ||||||||||||||||| |||||||||||| || || Sbjct 2 CGCCTGTCGGTCTACCATTCGCAGACCAAGCCGCTGGTGGATTTCTACCAGAAGTTGTCT 61 Query 257 GCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGTATAA 310 |||||| | |||||||| |||||||||||| | ||||| ||||| ||| || Sbjct 62 GCTGCCAACGGCAAGCCGAAGTACAGCCACATCCCTGGCGTCGGCTCCGTAGAA 115 >seq2418550 Length=154 Score = 125 bits (138), Expect = 1e-26 Identities = 96/114 (84%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 197 CGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGGCT 256 |||||||| || ||||||||||| ||||||||||||||||| |||||||||||| || || Sbjct 2 CGCCTGTCGGTCTACCATTCGCAGACCAAGCCGCTGGTGGATTTCTACCAGAAGTTGTCT 61 Query 257 GCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGTATAA 310 || ||||| |||||||| ||||||||||| | ||||| ||||| ||| || Sbjct 62 GCCGCCCACGGCAAGCCGAAGTACAGCCATATCCCTGGCGTCGGCTCCGTAGAA 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 871428109088