Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001674.1
Length=313
Score E
Sequences producing significant alignments: (Bits) Value
seq166989 372 5e-101
seq3072494 358 1e-96
seq2980007 358 1e-96
seq2686082 242 6e-62
seq188253 145 1e-32
seq2752331 132 8e-29
seq2418551 129 1e-27
seq2418550 125 1e-26
>seq166989
Length=2943
Score = 372 bits (412), Expect = 5e-101
Identities = 268/309 (87%), Gaps = 0/309 (0%)
Strand=Plus/Plus
Query 2 GAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCT 61
|||||||| || | |||||||| |||||||||||||| || || |||||||||||
Sbjct 260 GAGCTGGACGCTGTGGTTGAAATCGCAGTTGAAGACGAAGAAATCGTTCAGCGTATTGCG 319
Query 62 GGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAG 121
||||||||||| || |||| ||||||||||||||| |||| ||||||||| ||||| |||
Sbjct 320 GGCCGTCGCGTTCACGAAGGCTCGGGCCGCGTGTATCACATCGTCTACAACCCGCCGAAG 379
Query 122 GTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAA 181
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 380 GTTGAAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGTAAGGACGACACCGAA 439
Query 182 GAAACCGTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTC 241
|||||||| || || |||||||| || ||||||||||| ||||||||||||||||| |||
Sbjct 440 GAAACCGTGCGCCATCGCCTGTCGGTCTACCATTCGCAGACCAAGCCGCTGGTGGATTTC 499
Query 242 TACCAGAAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGC 301
||||||||||| | |||||||| |||||||| |||||||||||| | ||||| ||
Sbjct 500 TACCAGAAGCTTTCGGCTGCCCAAGGCAAGCCGAAGTACAGCCACATCCCTGGCGTGGGT 559
Query 302 TCGGTATAA 310
|||||| ||
Sbjct 560 TCGGTAGAA 568
>seq3072494
Length=1699
Score = 358 bits (396), Expect = 1e-96
Identities = 263/306 (86%), Gaps = 0/306 (0%)
Strand=Plus/Plus
Query 1 CGAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGC 60
|||| |||| | || |||||||||||||||| |||||||| || |||||||| |||||
Sbjct 112 CGAGTTGGACGCCGTGGTGGAAATCGCCGTTGAGGACGAAGAAATCGTCCAGCGCATTGC 171
Query 61 TGGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAA 120
|| |||||||| || |||| ||||||||||||||||||| ||||||||| ||||| ||
Sbjct 172 CGGTCGTCGCGTTCACGAAGGCTCGGGCCGCGTGTACCACGTCGTCTACAACCCGCCGAA 231
Query 121 GGTTGCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGA 180
||||| ||||||||||||||| ||||| ||| |||||||||||||||| ||||| |||||
Sbjct 232 GGTTGAAGGCAAGGACGATGTCACCGGTGAAAACCTGGTACAGCGCAAAGACGATACCGA 291
Query 181 AGAAACCGTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTT 240
||||||||| ||||| |||||||| || |||||||| || ||||||||||||||||||||
Sbjct 292 AGAAACCGTGCGTCATCGCCTGTCGGTCTACCATTCCCAGACCAAGCCGCTGGTGGACTT 351
Query 241 CTACCAGAAGCTGGCTGCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGG 300
||||||||||||| | ||||||||||||||||| || |||||||| | ||||| ||
Sbjct 352 CTACCAGAAGCTGTCCGCTGCCCAGGGCAAGCCGAAATACAGCCATATCCCTGGCGTCGG 411
Query 301 CTCGGT 306
||| ||
Sbjct 412 CTCCGT 417
>seq2980007
Length=558
Score = 358 bits (396), Expect = 1e-96
Identities = 252/288 (88%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 20 GAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCTGGCCGTCGCGTACAAGAA 79
|||||||| |||||||||||||| || || ||||||||||| ||||||||||| || |||
Sbjct 149 GAAATCGCAGTTGAAGACGAAGAAATCGTTCAGCGTATTGCCGGCCGTCGCGTTCACGAA 208
Query 80 GCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTTGCAGGCAAGGACGAT 139
| |||||||||||||||||||| ||||||||| ||||||||||||| |||||| |||||
Sbjct 209 GGCTCGGGCCGCGTGTACCACATCGTCTACAACCCGCCAAAGGTTGAAGGCAAAGACGAC 268
Query 140 GTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAAACCGTTCGTCACCGC 199
|||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |||
Sbjct 269 GTGACCGGGGAAGACCTGGTGCAGCGCAAGGACGACACCGAAGAAACCGTGCGTCATCGC 328
Query 200 CTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGGCTGCT 259
||||| || || ||||| || ||||||||||||||||| |||||||||||||| | | |
Sbjct 329 CTGTCGGTCTATCATTCACAGACCAAGCCGCTGGTGGATTTCTACCAGAAGCTTTCGGTT 388
Query 260 GCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGTA 307
||||| |||||||| |||||||||||| | ||||| || ||||||
Sbjct 389 GCCCAAGGCAAGCCGAAGTACAGCCACATCCCTGGCGTGGGTTCGGTA 436
>seq2686082
Length=194
Score = 242 bits (268), Expect = 6e-62
Identities = 170/194 (88%), Gaps = 0/194 (0%)
Strand=Plus/Plus
Query 65 CGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAGGTT 124
||||| || || ||||||||||||||||| ||||||| ||||||||| ||||| || ||
Sbjct 1 CGTCGTGTTCACGAAGCCTCGGGCCGCGTTTACCACATCGTCTACAACCCGCCTAAAGTG 60
Query 125 GCAGGCAAGGACGATGTGACCGGCGAAGACCTGGTACAGCGCAAGGACGACACCGAAGAA 184
|| |||||||||||||| |||||||| |||||||| ||||| || |||||||| ||||||
Sbjct 61 GCTGGCAAGGACGATGTCACCGGCGACGACCTGGTGCAGCGTAAAGACGACACTGAAGAA 120
Query 185 ACCGTTCGTCACCGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTAC 244
||||| ||||| |||||||| || ||||||||||| ||||||||||||||||| ||||||
Sbjct 121 ACCGTGCGTCATCGCCTGTCGGTCTACCATTCGCAGACCAAGCCGCTGGTGGATTTCTAC 180
Query 245 CAGAAGCTGGCTGC 258
|||||| || ||||
Sbjct 181 CAGAAGTTGTCTGC 194
>seq188253
Length=346
Score = 145 bits (160), Expect = 1e-32
Identities = 107/125 (86%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 2 GAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGCT 61
||||||||| | || | |||||||| |||||||||||||| || ||||||||||| |||
Sbjct 221 GAGCTGGATGCCGTGGTTGAAATCGCAGTTGAAGACGAAGAAATCGTCCAGCGTATCGCT 280
Query 62 GGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAAG 121
|||||||| || || ||||||||||||||||| ||||||| ||||||||| ||||| ||
Sbjct 281 GGCCGTCGTGTTCACGAAGCCTCGGGCCGCGTTTACCACATCGTCTACAACCCGCCTAAA 340
Query 122 GTTGC 126
|| ||
Sbjct 341 GTGGC 345
>seq2752331
Length=214
Score = 132 bits (146), Expect = 8e-29
Identities = 105/126 (83%), Gaps = 0/126 (0%)
Strand=Plus/Minus
Query 1 CGAGCTGGATCACATGCTGGAAATCGCCGTTGAAGACGAAGAGATTGTCCAGCGTATTGC 60
|||||||||| | || | |||||||| |||||||||||||| || || |||||||| ||
Sbjct 127 CGAGCTGGATGCCGTGGTTGAAATCGCAGTTGAAGACGAAGAAATCGTTCAGCGTATCGC 68
Query 61 TGGCCGTCGCGTACAAGAAGCCTCGGGCCGCGTGTACCACACCGTCTACAATCCGCCAAA 120
|| ||||| || || ||||||||||||||||| ||||||| ||||||||| ||||| ||
Sbjct 67 CGGTCGTCGTGTTCACGAAGCCTCGGGCCGCGTTTACCACATCGTCTACAACCCGCCTAA 8
Query 121 GGTTGC 126
|| ||
Sbjct 7 AGTGGC 2
>seq2418551
Length=154
Score = 129 bits (142), Expect = 1e-27
Identities = 97/114 (85%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 197 CGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGGCT 256
|||||||| || ||||||||||| ||||||||||||||||| |||||||||||| || ||
Sbjct 2 CGCCTGTCGGTCTACCATTCGCAGACCAAGCCGCTGGTGGATTTCTACCAGAAGTTGTCT 61
Query 257 GCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGTATAA 310
|||||| | |||||||| |||||||||||| | ||||| ||||| ||| ||
Sbjct 62 GCTGCCAACGGCAAGCCGAAGTACAGCCACATCCCTGGCGTCGGCTCCGTAGAA 115
>seq2418550
Length=154
Score = 125 bits (138), Expect = 1e-26
Identities = 96/114 (84%), Gaps = 0/114 (0%)
Strand=Plus/Plus
Query 197 CGCCTGTCTGTTTACCATTCGCAAACCAAGCCGCTGGTGGACTTCTACCAGAAGCTGGCT 256
|||||||| || ||||||||||| ||||||||||||||||| |||||||||||| || ||
Sbjct 2 CGCCTGTCGGTCTACCATTCGCAGACCAAGCCGCTGGTGGATTTCTACCAGAAGTTGTCT 61
Query 257 GCTGCCCAGGGCAAGCCCAAGTACAGCCACGTTGAAGGCGTTGGCTCGGTATAA 310
|| ||||| |||||||| ||||||||||| | ||||| ||||| ||| ||
Sbjct 62 GCCGCCCACGGCAAGCCGAAGTACAGCCATATCCCTGGCGTCGGCTCCGTAGAA 115
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 871428109088
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |