Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001688.1
Length=394
Score E
Sequences producing significant alignments: (Bits) Value
seq3078490 531 1e-148
seq2980976 441 2e-121
seq78255 302 1e-79
seq2587603 250 6e-64
seq2273499 181 2e-43
seq2834272 158 3e-36
seq236151 152 1e-34
seq2598568 100 6e-19
seq2598267 100 6e-19
>seq3078490
Length=2038
Score = 531 bits (588), Expect = 1e-148
Identities = 354/394 (90%), Gaps = 0/394 (0%)
Strand=Plus/Minus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
|||| |||||||||||||||||||||||||||||||||||||| || ||||| || || |
Sbjct 1520 CGATCGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCCGTCACCTGCCCTACCT 1461
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
||||||||||||||||||||||||||| |||||| ||||| |||||||| || ||||| |
Sbjct 1460 GATCCTGCTGCTCGGCCAGGCCGTAGCGGAATTTACGCACACCGAGGAAATGTTCCAGCG 1401
Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180
|||||||| |||||||||||||||||||||||||||||||| |||||||| || ||||
Sbjct 1400 CATCGGCCGTCACCTTCACCGAGAAGCGTTTTTCCAGCGCATGCTCCTTGACTGCTTTGC 1341
Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240
|||| | |||||||||||||||||| ||||| || |||||||| ||||||||||| ||||
Sbjct 1340 GGCAAACCTTCGCGATCTGGCGCTCAAGGCCCCGTACACCGGCCTCGCGGGTGTAATAGC 1281
Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300
| |||||||| ||||||| |||| ||||| ||||||||||| ||||||||||||||||
Sbjct 1280 GCACGATGTCTCGGATCGCTTCGACGTCAAACTCGATCTCGCCTTTCTTCAGGCCATTGG 1221
Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360
|||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1220 CCGACGTCTGCTTGGGCGCGAGGTATTTGATCGCGATGTTGATCTTCTCGTCTTCGGTGT 1161
Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
||||||| || |||||||| ||||||||||||||
Sbjct 1160 AACCCGGTAGACGAATCACCTCCATCCGGTCCAG 1127
>seq2980976
Length=562
Score = 441 bits (488), Expect = 2e-121
Identities = 324/377 (86%), Gaps = 0/377 (0%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
||||||||||||| ||||| |||||||| |||||||||||||| || ||||| || || |
Sbjct 186 CGATGGTCAGCAATTCGCCACCCACCTGAGTCCACGCCAGGCCGGTCACCTGCCCTACCT 245
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
| || |||||||||||||||||||| | |||||| ||| || |||||||| || ||||
Sbjct 246 GGTCTTGCTGCTCGGCCAGGCCGTAACGGAATTTCTTCACACCCAGGAAGTGTTCAAGGG 305
Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180
||||||| |||||||| |||||||||||||||||||| ||||| |||||||||||||
Sbjct 306 AGTCGGCGACAACCTTCACAGAGAAGCGTTTTTCCAGCGCGTGTTCTTTGACCGCCTTGC 365
Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240
|||| |||||||| ||||||||||| ||||| || ||||| || ||||| ||||| || |
Sbjct 366 GGCAAATCTTCGCAATCTGGCGCTCAAGGCCCCGTACACCCGCCTCGCGCGTGTAATAAC 425
Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300
| ||||||||||| |||| |||| ||||| ||||||||||| || |||| ||| ||||
Sbjct 426 GCACGATGTCGCGAATCGCTTCGACCTCAAACTCGATCTCGCCTTTTTTCAAGCCGTTGG 485
Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360
| |||||||| || ||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 486 CTGAAATCTGTTTAGGCGCGAGGTATTTGACGGCGATGTTGATCTTCTCGTCTTCGGTGT 545
Query 361 AACCCGGCAGGCGAATC 377
|||||||||| ||||||
Sbjct 546 AACCCGGCAGACGAATC 562
>seq78255
Length=873
Score = 302 bits (334), Expect = 1e-79
Identities = 205/230 (89%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
||||||||||||| |||||||||||||||||||||||||||||||| ||||| || || |
Sbjct 230 CGATGGTCAGCAATTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTCACCTGCCCTACCT 171
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
| ||||||||||| ||||||||||| | |||||| |||||| ||||||||||||||||
Sbjct 170 GGTCCTGCTGCTCAGCCAGGCCGTAACGGAATTTCTTCACGCCCAGGAAGTGCTCCAGGG 111
Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180
| ||||| ||||||||||||||||||||||||||||| ||||| |||||||| ||||
Sbjct 110 AATCGGCAACCACCTTCACCGAGAAGCGTTTTTCCAGCGCGTGTTCTTTGACCGCTTTGC 51
Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGG 230
||||||||||||| ||||| ||||| ||||||||||| ||||||||||||
Sbjct 50 GGCAGATCTTCGCAATCTGACGCTCAAGGCCACGCACGCCGGCTTCGCGG 1
>seq2587603
Length=178
Score = 250 bits (276), Expect = 6e-64
Identities = 161/176 (91%), Gaps = 0/176 (0%)
Strand=Plus/Minus
Query 195 ATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGG 254
||||| ||||| ||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 177 ATCTGACGCTCAAGGCCACGCACGCCGGCTTCGCGGGTGTAGTAACGCACGATGTCGCGG 118
Query 255 ATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTG 314
|| | |||| ||||||||||||||||| || |||||||||||||||||||| ||||||
Sbjct 117 ATTGCTTCGACGTCAAATTCGATCTCGCCTTTTTTCAGGCCATTGGCCGAAATTTGCTTG 58
Query 315 GGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAG 370
||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct 57 GGCGCGAGGTATTTGACGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAG 2
>seq2273499
Length=134
Score = 181 bits (200), Expect = 2e-43
Identities = 120/133 (90%), Gaps = 0/133 (0%)
Strand=Plus/Minus
Query 98 CACGCCGAGGAAGTGCTCCAGGGAGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAG 157
|||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 133 CACGCCCAGGAAGTGCTCCAGGGAATCGGCAACCACCTTCACCGAGAAGCGTTTTTCCAG 74
Query 158 CGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCAC 217
|| ||| ||||||||||| ||||||||||||||||| ||||| ||||| |||||||||||
Sbjct 73 CGAATGCTCCTTGACCGCTTTGCGGCAGATCTTCGCAATCTGACGCTCAAGGCCACGCAC 14
Query 218 ACCGGCTTCGCGG 230
||||||||||||
Sbjct 13 GCCGGCTTCGCGG 1
>seq2834272
Length=256
Score = 158 bits (174), Expect = 3e-36
Identities = 110/125 (88%), Gaps = 0/125 (0%)
Strand=Plus/Plus
Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60
|||||||||||| || ||||||||||||||||||||||||||||| ||||| || || |
Sbjct 132 CGATGGTCAGCAGTTCACCGCCCACCTGGGTCCACGCCAGGCCAGTCACCTGCCCTACCT 191
Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120
||||||||||||| ||||||||||| | |||||| |||||| ||||||||||||||||
Sbjct 192 GATCCTGCTGCTCAGCCAGGCCGTAACGGAATTTCTTCACGCCCAGGAAGTGCTCCAGGG 251
Query 121 AGTCG 125
| |||
Sbjct 252 AATCG 256
>seq236151
Length=630
Score = 152 bits (168), Expect = 1e-34
Identities = 102/114 (89%), Gaps = 0/114 (0%)
Strand=Plus/Minus
Query 195 ATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGG 254
||||| ||||| ||||||||||| |||||||||||||||||||| || ||||||||||||
Sbjct 629 ATCTGACGCTCAAGGCCACGCACGCCGGCTTCGCGGGTGTAGTAACGCACGATGTCGCGG 570
Query 255 ATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATC 308
|||| |||| ||||||||||||||||| || ||||||||||||||||| |||
Sbjct 569 ATCGCTTCGACCTCAAATTCGATCTCGCCTTTTTTCAGGCCATTGGCCGAGATC 516
>seq2598568
Length=180
Score = 100 bits (110), Expect = 6e-19
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Plus
Query 335 GATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 1 GATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGACGAATCACCTCCATCCGGTCCAG 60
>seq2598267
Length=180
Score = 100 bits (110), Expect = 6e-19
Identities = 58/60 (97%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 335 GATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394
|||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||
Sbjct 180 GATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGACGAATCACCTCCATCCGGTCCAG 121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1122622688576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |