Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001688.1 Length=394 Score E Sequences producing significant alignments: (Bits) Value seq3078490 531 1e-148 seq2980976 441 2e-121 seq78255 302 1e-79 seq2587603 250 6e-64 seq2273499 181 2e-43 seq2834272 158 3e-36 seq236151 152 1e-34 seq2598568 100 6e-19 seq2598267 100 6e-19 >seq3078490 Length=2038 Score = 531 bits (588), Expect = 1e-148 Identities = 354/394 (90%), Gaps = 0/394 (0%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||| |||||||||||||||||||||||||||||||||||||| || ||||| || || | Sbjct 1520 CGATCGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCCGTCACCTGCCCTACCT 1461 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 ||||||||||||||||||||||||||| |||||| ||||| |||||||| || ||||| | Sbjct 1460 GATCCTGCTGCTCGGCCAGGCCGTAGCGGAATTTACGCACACCGAGGAAATGTTCCAGCG 1401 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 |||||||| |||||||||||||||||||||||||||||||| |||||||| || |||| Sbjct 1400 CATCGGCCGTCACCTTCACCGAGAAGCGTTTTTCCAGCGCATGCTCCTTGACTGCTTTGC 1341 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 |||| | |||||||||||||||||| ||||| || |||||||| ||||||||||| |||| Sbjct 1340 GGCAAACCTTCGCGATCTGGCGCTCAAGGCCCCGTACACCGGCCTCGCGGGTGTAATAGC 1281 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 | |||||||| ||||||| |||| ||||| ||||||||||| |||||||||||||||| Sbjct 1280 GCACGATGTCTCGGATCGCTTCGACGTCAAACTCGATCTCGCCTTTCTTCAGGCCATTGG 1221 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 |||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||| Sbjct 1220 CCGACGTCTGCTTGGGCGCGAGGTATTTGATCGCGATGTTGATCTTCTCGTCTTCGGTGT 1161 Query 361 AACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 ||||||| || |||||||| |||||||||||||| Sbjct 1160 AACCCGGTAGACGAATCACCTCCATCCGGTCCAG 1127 >seq2980976 Length=562 Score = 441 bits (488), Expect = 2e-121 Identities = 324/377 (86%), Gaps = 0/377 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||||||| ||||| |||||||| |||||||||||||| || ||||| || || | Sbjct 186 CGATGGTCAGCAATTCGCCACCCACCTGAGTCCACGCCAGGCCGGTCACCTGCCCTACCT 245 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | || |||||||||||||||||||| | |||||| ||| || |||||||| || |||| Sbjct 246 GGTCTTGCTGCTCGGCCAGGCCGTAACGGAATTTCTTCACACCCAGGAAGTGTTCAAGGG 305 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 ||||||| |||||||| |||||||||||||||||||| ||||| ||||||||||||| Sbjct 306 AGTCGGCGACAACCTTCACAGAGAAGCGTTTTTCCAGCGCGTGTTCTTTGACCGCCTTGC 365 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGC 240 |||| |||||||| ||||||||||| ||||| || ||||| || ||||| ||||| || | Sbjct 366 GGCAAATCTTCGCAATCTGGCGCTCAAGGCCCCGTACACCCGCCTCGCGCGTGTAATAAC 425 Query 241 GGACGATGTCGCGGATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGG 300 | ||||||||||| |||| |||| ||||| ||||||||||| || |||| ||| |||| Sbjct 426 GCACGATGTCGCGAATCGCTTCGACCTCAAACTCGATCTCGCCTTTTTTCAAGCCGTTGG 485 Query 301 CCGAAATCTGCTTGGGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGT 360 | |||||||| || ||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct 486 CTGAAATCTGTTTAGGCGCGAGGTATTTGACGGCGATGTTGATCTTCTCGTCTTCGGTGT 545 Query 361 AACCCGGCAGGCGAATC 377 |||||||||| |||||| Sbjct 546 AACCCGGCAGACGAATC 562 >seq78255 Length=873 Score = 302 bits (334), Expect = 1e-79 Identities = 205/230 (89%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 ||||||||||||| |||||||||||||||||||||||||||||||| ||||| || || | Sbjct 230 CGATGGTCAGCAATTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTCACCTGCCCTACCT 171 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 | ||||||||||| ||||||||||| | |||||| |||||| |||||||||||||||| Sbjct 170 GGTCCTGCTGCTCAGCCAGGCCGTAACGGAATTTCTTCACGCCCAGGAAGTGCTCCAGGG 111 Query 121 AGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAGCGCATGTTCCTTGACCGCCTTGC 180 | ||||| ||||||||||||||||||||||||||||| ||||| |||||||| |||| Sbjct 110 AATCGGCAACCACCTTCACCGAGAAGCGTTTTTCCAGCGCGTGTTCTTTGACCGCTTTGC 51 Query 181 GGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGG 230 ||||||||||||| ||||| ||||| ||||||||||| |||||||||||| Sbjct 50 GGCAGATCTTCGCAATCTGACGCTCAAGGCCACGCACGCCGGCTTCGCGG 1 >seq2587603 Length=178 Score = 250 bits (276), Expect = 6e-64 Identities = 161/176 (91%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 195 ATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGG 254 ||||| ||||| ||||||||||| |||||||||||||||||||| || |||||||||||| Sbjct 177 ATCTGACGCTCAAGGCCACGCACGCCGGCTTCGCGGGTGTAGTAACGCACGATGTCGCGG 118 Query 255 ATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATCTGCTTG 314 || | |||| ||||||||||||||||| || |||||||||||||||||||| |||||| Sbjct 117 ATTGCTTCGACGTCAAATTCGATCTCGCCTTTTTTCAGGCCATTGGCCGAAATTTGCTTG 58 Query 315 GGCGCGAGGTACTTGATGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAG 370 ||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| Sbjct 57 GGCGCGAGGTATTTGACGGCGATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAG 2 >seq2273499 Length=134 Score = 181 bits (200), Expect = 2e-43 Identities = 120/133 (90%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 98 CACGCCGAGGAAGTGCTCCAGGGAGTCGGCCGTGACCTTCACCGAGAAGCGTTTTTCCAG 157 |||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 133 CACGCCCAGGAAGTGCTCCAGGGAATCGGCAACCACCTTCACCGAGAAGCGTTTTTCCAG 74 Query 158 CGCATGTTCCTTGACCGCCTTGCGGCAGATCTTCGCGATCTGGCGCTCCAGGCCACGCAC 217 || ||| ||||||||||| ||||||||||||||||| ||||| ||||| ||||||||||| Sbjct 73 CGAATGCTCCTTGACCGCTTTGCGGCAGATCTTCGCAATCTGACGCTCAAGGCCACGCAC 14 Query 218 ACCGGCTTCGCGG 230 |||||||||||| Sbjct 13 GCCGGCTTCGCGG 1 >seq2834272 Length=256 Score = 158 bits (174), Expect = 3e-36 Identities = 110/125 (88%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 1 CGATGGTCAGCAACTCGCCGCCCACCTGGGTCCACGCCAGGCCAGTGACCTGACCGACTT 60 |||||||||||| || ||||||||||||||||||||||||||||| ||||| || || | Sbjct 132 CGATGGTCAGCAGTTCACCGCCCACCTGGGTCCACGCCAGGCCAGTCACCTGCCCTACCT 191 Query 61 GATCCTGCTGCTCGGCCAGGCCGTAGCTGAATTTGCGCACGCCGAGGAAGTGCTCCAGGG 120 ||||||||||||| ||||||||||| | |||||| |||||| |||||||||||||||| Sbjct 192 GATCCTGCTGCTCAGCCAGGCCGTAACGGAATTTCTTCACGCCCAGGAAGTGCTCCAGGG 251 Query 121 AGTCG 125 | ||| Sbjct 252 AATCG 256 >seq236151 Length=630 Score = 152 bits (168), Expect = 1e-34 Identities = 102/114 (89%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 195 ATCTGGCGCTCCAGGCCACGCACACCGGCTTCGCGGGTGTAGTAGCGGACGATGTCGCGG 254 ||||| ||||| ||||||||||| |||||||||||||||||||| || |||||||||||| Sbjct 629 ATCTGACGCTCAAGGCCACGCACGCCGGCTTCGCGGGTGTAGTAACGCACGATGTCGCGG 570 Query 255 ATCGTGCCGACTTCAAATTCGATCTCGCCCTTCTTCAGGCCATTGGCCGAAATC 308 |||| |||| ||||||||||||||||| || ||||||||||||||||| ||| Sbjct 569 ATCGCTTCGACCTCAAATTCGATCTCGCCTTTTTTCAGGCCATTGGCCGAGATC 516 >seq2598568 Length=180 Score = 100 bits (110), Expect = 6e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Plus Query 335 GATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 1 GATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGACGAATCACCTCCATCCGGTCCAG 60 >seq2598267 Length=180 Score = 100 bits (110), Expect = 6e-19 Identities = 58/60 (97%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 335 GATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGGCGAATCACTTCCATCCGGTCCAG 394 |||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| Sbjct 180 GATGTTGATCTTCTCGTCTTCGGTGTAACCCGGCAGACGAATCACCTCCATCCGGTCCAG 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1122622688576