Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001690.1 Length=455 Score E Sequences producing significant alignments: (Bits) Value seq2937777 480 2e-133 seq2693880 336 6e-90 seq2657603 331 2e-88 seq2273485 237 4e-60 seq2037928 215 1e-53 seq2022895 212 2e-52 seq1139095 203 9e-50 seq1003053 201 3e-49 seq408065 172 1e-40 seq2226900 170 5e-40 seq2225028 161 3e-37 seq2997310 152 1e-34 seq2903991 134 4e-29 >seq2937777 Length=410 Score = 480 bits (532), Expect = 2e-133 Identities = 278/286 (97%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 125 CGATCAGGAATACTTCGCGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 184 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 120 | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 185 CAACCTGGGTGGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAAC 244 Query 121 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 180 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 245 TGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGG 304 Query 181 CGATCACGCCGTCTTTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCA 240 ||||||||||||| |||||||||||||||||||| || ||||||||||| |||||||||| Sbjct 305 CGATCACGCCGTCCTTCATCGGACGAATGGCAGCGATGTTGCCTGGTGTTCGGCCGAGCA 364 Query 241 TGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATTACC 286 ||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 365 TGCGCTTGGCCTCGGTGCCAACGGCAACGACACTTTTCTGATTACC 410 >seq2693880 Length=196 Score = 336 bits (372), Expect = 6e-90 Identities = 192/196 (98%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 98 ACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCAT 157 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACGAGGGCTGGGCTGCAGAAAACTGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCAT 60 Query 158 CTTCTCGCAGACGCTGAAGTCGGCGATCACGCCGTCTTTCATCGGACGAATGGCAGCAAT 217 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTCTCGCAGACACTGAAGTCGGCGATCACGCCGTCTTTCATCGGACGAATGGCAGCAAT 120 Query 218 ATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTT 277 |||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 121 ATTGCCGGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCAACGGCAACGACACTTTT 180 Query 278 CTGATTACCATGGGTC 293 |||||||||||||||| Sbjct 181 CTGATTACCATGGGTC 196 >seq2657603 Length=189 Score = 331 bits (366), Expect = 2e-88 Identities = 186/188 (99%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 135 TTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCCGTCT 194 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 189 TTGTTGATGAAGTACTGCAGCATCTTTTCGCAGACGCTGAAGTCGGCGATCACGCCGTCT 130 Query 195 TTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCG 254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 129 TTCATCGGACGAATGGCAGCAATATTGCCTGGTGTACGGCCGAGCATGCGCTTGGCCTCG 70 Query 255 GTGCCGACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAACCGATGGC 314 ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 69 GTGCCTACGGCAACGACACTTTTCTGATTACCATGGGTCCGAATGGCCACAACCGATGGC 10 Query 315 TCATTCAG 322 |||||||| Sbjct 9 TCATTCAG 2 >seq2273485 Length=134 Score = 237 bits (262), Expect = 4e-60 Identities = 133/134 (99%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 288 TGGGTCCGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCACGTAA 347 ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1 TGGGTCCGAATGGCCACAACCGATGGCTCATTCAGAACGATACCGCGCTCGCGCACGTAA 60 Query 348 ATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGT 407 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 ATAAGGGTGTTGGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGT 120 Query 408 TTCTTGAACATGGG 421 |||||||||||||| Sbjct 121 TTCTTGAACATGGG 134 >seq2037928 Length=127 Score = 215 bits (238), Expect = 1e-53 Identities = 124/127 (98%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 71 GGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTG 130 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 127 GGACTTGCACGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGAAAACTGTTTTCGTG 68 Query 131 AACCTTGTTGATGAAGTACTGCAGCATCTTCTCGCAGACGCTGAAGTCGGCGATCACGCC 190 ||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 67 AACTTTGTTGATGAAGTACTGCAGCATCTTTTCGCAGACGCTGAAGTCGGCGATCACGCC 8 Query 191 GTCTTTC 197 ||||||| Sbjct 7 GTCTTTC 1 >seq2022895 Length=127 Score = 212 bits (234), Expect = 2e-52 Identities = 123/127 (97%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 224 TGGTGTACGGCCGAGCATGCGCTTGGCCTCGGTGCCGACGGCAACGACACTTTTCTGATT 283 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1 TGGTGTTCGGCCGAGCATGCGCTTGGCCTCGGTGCCAACGGCAACGACACTTTTCTGATT 60 Query 284 ACCATGGGTCCGAATGGCCACAACCGATGGCTCATTCAGGACGATACCGCGCTCGCGCAC 343 ||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 61 ACCGTGGGTCCGAATGGCCACAACCGATGGCTCATTCAGAACGATACCGCGCTCGCGCAC 120 Query 344 GTAAATA 350 ||||||| Sbjct 121 GTAAATA 127 >seq1139095 Length=117 Score = 203 bits (224), Expect = 9e-50 Identities = 115/117 (98%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 30 CCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTGGACTTGCACGGAACGCAG 89 ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 CCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTGGACTTGCACGGGACGCAG 60 Query 90 ATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGAACCTTGTTGATGAAG 146 |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 ATCAGCACACGAGGGCTGGGCTGCAGAAAACTGTTTTCGTGAACCTTGTTGATGAAG 117 >seq1003053 Length=114 Score = 201 bits (222), Expect = 3e-49 Identities = 113/114 (99%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 20 GGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTGGACTTGCA 79 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCTCCACCTGGGTGGACTTGCA 60 Query 80 CGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGAAC 133 |||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 61 CGGAACGCAGATCAGCACACGAGGGCTGGGCTGCAGAAAACTGTTTTCGTGAAC 114 >seq408065 Length=100 Score = 172 bits (190), Expect = 1e-40 Identities = 98/100 (98%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 98 ACGAGGGCTGGGCTGCAGGAAACTGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCAT 157 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 1 ACGAGGGCTGGGCTGCAGAAAACTGTTTTCGTGAACCTTGTTGATGAAGTACTGCAGCAT 60 Query 158 CTTCTCGCAGACGCTGAAGTCGGCGATCACGCCGTCTTTC 197 ||| |||||||||||||||||||||||||||||||||||| Sbjct 61 CTTTTCGCAGACGCTGAAGTCGGCGATCACGCCGTCTTTC 100 >seq2226900 Length=130 Score = 170 bits (188), Expect = 5e-40 Identities = 96/97 (99%), Gaps = 0/97 (0%) Strand=Plus/Plus Query 359 GGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACAT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACAT 60 Query 419 GGGGAAAGGACCCTAAGCAACGCGTGGGTAAAAAAGT 455 ||||||||||||||| ||||||||||||||||||||| Sbjct 61 GGGGAAAGGACCCTAGGCAACGCGTGGGTAAAAAAGT 97 >seq2225028 Length=130 Score = 161 bits (178), Expect = 3e-37 Identities = 94/97 (97%), Gaps = 0/97 (0%) Strand=Plus/Minus Query 359 GGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACAT 418 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 130 GGCAGTGCCCAGGTCAATGGAAAGATCGCTGGAAAACATGCCACGCAGTTTCTTGAACAT 71 Query 419 GGGGAAAGGACCCTAAGCAACGCGTGGGTAAAAAAGT 455 ||| || |||||||| ||||||||||||||||||||| Sbjct 70 GGGAAAGGGACCCTAGGCAACGCGTGGGTAAAAAAGT 34 >seq2997310 Length=647 Score = 152 bits (168), Expect = 1e-34 Identities = 89/92 (97%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||| Sbjct 556 CGATCAGGAACACTTCGCGGGCACCGGCACCAAGGGCCGATTCACGGATGGCACGACGCT 615 Query 61 CCACCTGGGTGGACTTGCACGGAACGCAGATC 92 |||||||||||||||||||||| ||||||||| Sbjct 616 CCACCTGGGTGGACTTGCACGGGACGCAGATC 647 >seq2903991 Length=338 Score = 134 bits (148), Expect = 4e-29 Identities = 79/82 (96%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 1 CGATCAGGAACACTTCACGGGCACCGGCGCCAAGGGCCGATTCACGGATGGCACGACGCT 60 |||||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 257 CGATCAGGAACACTTCGCGGGCACCGGCGCCAAGAGCCGATTCACGGATGGCGCGACGCT 316 Query 61 CCACCTGGGTGGACTTGCACGG 82 |||||||||||||||||||||| Sbjct 317 CCACCTGGGTGGACTTGCACGG 338 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1311793915104