Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001693.1
Length=610
Score E
Sequences producing significant alignments: (Bits) Value
seq144353 300 6e-79
seq2317456 161 4e-37
seq1263210 158 4e-36
seq2362557 152 2e-34
seq2652390 129 2e-27
seq2815282 123 9e-26
seq169770 98.7 4e-18
seq240294 96.9 1e-17
>seq144353
Length=33745
Score = 300 bits (332), Expect = 6e-79
Identities = 318/433 (73%), Gaps = 44/433 (10%)
Strand=Plus/Minus
Query 135 CCGGACGCCGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGCCTGCACGACGACCT 194
|| ||||| || |||| || |||||||||||||||||| ||| | | |||
Sbjct 30823 CCAGACGCTGAGCTGGTGATCAAAGCGCTGGATATGGCTTACGAGCAACGTGGCAGGCCT 30764
Query 195 CATGGTCTGCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTCGCCAG 254
| ||||| |||||||||| || || ||||| ||||| || || | |||||||||
Sbjct 30763 TCGGACCTGCTATTTCACTCGGACCAGGGATCGCAATATGCAAGCCGAATCTTTCGCCAG 30704
Query 255 CGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGACAAT 314
||| ||||||| || ||||||||||||||||||||||| || ||||| |||||||| ||
Sbjct 30703 CGGTTGTGGCGATACCGCATGCGCCAGAGCATGAGTCGACGAGGAAACTGCTGGGATAAC 30644
Query 315 GCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGTTAC 374
|| || ||||||||||| || |||||||||||||| || |||||||||||| ||| ||
Sbjct 30643 GCACCGATGGAGCGCGTATTTCGCAGCTTGAAAACAGAATGGATACCGACCGTGGGCTAT 30584
Query 375 CGAACGGCTCAAGAAGCCCAGCGCGAT--------------------------------- 401
||||| || || ||||| |||||||||
Sbjct 30583 CGAACTGCGCAGGAAGCACAGCGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 30524
Query 402 -----------ATCAGCCAATTCTTAATGCATCGGTACAACTGGATTCGCCCCCATCGAT 450
|||||| || || |||||||| |||||||||||| | || |||| ||
Sbjct 30523 NNNNNNNNNNNNNCAGCCATTTTTTGATGCATCGCTACAACTGGATTAGGCCTCATCAAT 30464
Query 451 TCAACGGTGGGCTGGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTA 510
|||||| |||| |||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 30463 TCAACGATGGGTTGGCGCCAGCGCGGGCCGAGGAAAAACTTAACGTCGTGTCCGGGATTA 30404
Query 511 GTTGACCACTACA 523
|||||||||||||
Sbjct 30403 GTTGACCACTACA 30391
>seq2317456
Length=139
Score = 161 bits (178), Expect = 4e-37
Identities = 118/137 (86%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 246 TTTCGCCAGCGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGC 305
|||||||||||| ||||||| || ||||||||||||||||||||||| || ||||| |||
Sbjct 3 TTTCGCCAGCGGTTGTGGCGATACCGCATGCGCCAGAGCATGAGTCGACGAGGAAACTGC 62
Query 306 TGGGACAATGCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACC 365
||||| || || || ||||||||||| || |||||||||||||| || ||||||||||||
Sbjct 63 TGGGATAACGCACCGATGGAGCGCGTATTTCGCAGCTTGAAAACAGAATGGATACCGACC 122
Query 366 ACGGGTTACCGAACGGC 382
||| || ||||| ||
Sbjct 123 GTGGGCTATCGAACTGC 139
>seq1263210
Length=120
Score = 158 bits (174), Expect = 4e-36
Identities = 107/120 (89%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 404 CAGCCAATTCTTAATGCATCGGTACAACTGGATTCGCCCCCATCGATTCAACGGTGGGCT 463
|||||| || || |||||||| |||||||||||| | || |||| |||||||| |||| |
Sbjct 120 CAGCCATTTTTTGATGCATCGCTACAACTGGATTAGGCCTCATCAATTCAACGATGGGTT 61
Query 464 GGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTACA 523
||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 60 GGCTCCAGCGCGGGCCGAGGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTACA 1
>seq2362557
Length=145
Score = 152 bits (168), Expect = 2e-34
Identities = 120/144 (83%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 321 ATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGTTACCGAACG 380
||||||||||| || |||||||||||||| || |||||||||||| ||| || |||||
Sbjct 144 ATGGAGCGCGTATTTCGCAGCTTGAAAACAGAATGGATACCGACCGTGGGCTATCGAACT 85
Query 381 GCTCAAGAAGCCCAGCGCGATATCAGCCAATTCTTAATGCATCGGTACAACTGGATTCGC 440
|| || |||| |||||||| |||||||| || || |||||||| |||||||||||| |
Sbjct 84 GCACAGAAAGCACAGCGCGACATCAGCCATTTTTTGATGCATCGCTACAACTGGATTAGG 25
Query 441 CCCCATCGATTCAACGGTGGGCTG 464
|| |||| |||||||| |||| ||
Sbjct 24 CCTCATCAATTCAACGATGGGTTG 1
>seq2652390
Length=188
Score = 129 bits (142), Expect = 2e-27
Identities = 134/173 (77%), Gaps = 2/173 (1%)
Strand=Plus/Plus
Query 135 CCGGACGCCGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGCCTGCACGAC-GACC 193
|| ||||| || |||| || |||||||||||||||||| ||| || | | | ||
Sbjct 17 CCAGACGCTGAGCTGGTGATCAAAGCGCTGGATATGGCTTACGAGCA-GCGTGGCAGGCC 75
Query 194 TCATGGTCTGCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTCGCCA 253
| | |||||| | |||||||| || || ||||| ||||| || || | ||||||||
Sbjct 76 TTCGGATCTGCTATTCCACTCGGACCAGGGATCGCAATATGCAAGCCGACTCTTTCGCCA 135
Query 254 GCGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCT 306
|||| ||||||| || ||||||||||||||||||||||| || ||||| ||||
Sbjct 136 GCGGTTGTGGCGATACCGCATGCGCCAGAGCATGAGTCGACGAGGAAACTGCT 188
>seq2815282
Length=243
Score = 123 bits (136), Expect = 9e-26
Identities = 123/158 (78%), Gaps = 1/158 (1%)
Strand=Plus/Plus
Query 23 GTGTGGTGCGGCGACCTCCCCTACATCTGGGCCCATGGGAAATGGCATTACCTGGCTGTC 82
|| ||||||||||| || ||||||| ||||| || || || ||||||||||||||||||
Sbjct 86 GTCTGGTGCGGCGATATCACCTACATTTGGGCGCAAGGAAAGTGGCATTACCTGGCTGTC 145
Query 83 GCGCTGGATCTTTGCTCGCGCCGGGTGGTGGCTTGGGCGTTGACCAGACACCCCGGACGC 142
| ||||||||||| |||| ||| | |||| |||||| || | || | || |||||
Sbjct 146 GTCCTGGATCTTTGTACGCGTCGGATCGTGGGCTGGGCGCTG-TCGGAAAAGCCAGACGC 204
Query 143 CGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGC 180
|| |||| || |||||||||||||||||| |||
Sbjct 205 TGAGCTGGTGATCAAAGCGCTGGATATGGCTTACGAGC 242
>seq169770
Length=4274
Score = 98.7 bits (108), Expect = 4e-18
Identities = 59/62 (95%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 463 TGGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTAC 522
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 4272 TGGCTCCAGCGCGGGCCGAGGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTAC 4213
Query 523 AG 524
||
Sbjct 4212 AG 4211
>seq240294
Length=15375
Score = 96.9 bits (106), Expect = 1e-17
Identities = 58/61 (95%), Gaps = 0/61 (0%)
Strand=Plus/Minus
Query 463 TGGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTAC 522
|||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 15373 TGGCTCCAGCGCGGGCCGAGGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTAC 15314
Query 523 A 523
|
Sbjct 15313 A 15313
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1792474900544
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |