Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001693.1 Length=610 Score E Sequences producing significant alignments: (Bits) Value seq144353 300 6e-79 seq2317456 161 4e-37 seq1263210 158 4e-36 seq2362557 152 2e-34 seq2652390 129 2e-27 seq2815282 123 9e-26 seq169770 98.7 4e-18 seq240294 96.9 1e-17 >seq144353 Length=33745 Score = 300 bits (332), Expect = 6e-79 Identities = 318/433 (73%), Gaps = 44/433 (10%) Strand=Plus/Minus Query 135 CCGGACGCCGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGCCTGCACGACGACCT 194 || ||||| || |||| || |||||||||||||||||| ||| | | ||| Sbjct 30823 CCAGACGCTGAGCTGGTGATCAAAGCGCTGGATATGGCTTACGAGCAACGTGGCAGGCCT 30764 Query 195 CATGGTCTGCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTCGCCAG 254 | ||||| |||||||||| || || ||||| ||||| || || | ||||||||| Sbjct 30763 TCGGACCTGCTATTTCACTCGGACCAGGGATCGCAATATGCAAGCCGAATCTTTCGCCAG 30704 Query 255 CGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCTGGGACAAT 314 ||| ||||||| || ||||||||||||||||||||||| || ||||| |||||||| || Sbjct 30703 CGGTTGTGGCGATACCGCATGCGCCAGAGCATGAGTCGACGAGGAAACTGCTGGGATAAC 30644 Query 315 GCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGTTAC 374 || || ||||||||||| || |||||||||||||| || |||||||||||| ||| || Sbjct 30643 GCACCGATGGAGCGCGTATTTCGCAGCTTGAAAACAGAATGGATACCGACCGTGGGCTAT 30584 Query 375 CGAACGGCTCAAGAAGCCCAGCGCGAT--------------------------------- 401 ||||| || || ||||| ||||||||| Sbjct 30583 CGAACTGCGCAGGAAGCACAGCGCGATNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN 30524 Query 402 -----------ATCAGCCAATTCTTAATGCATCGGTACAACTGGATTCGCCCCCATCGAT 450 |||||| || || |||||||| |||||||||||| | || |||| || Sbjct 30523 NNNNNNNNNNNNNCAGCCATTTTTTGATGCATCGCTACAACTGGATTAGGCCTCATCAAT 30464 Query 451 TCAACGGTGGGCTGGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTA 510 |||||| |||| |||||||||| |||||||| |||||||||||||||||||||||||||| Sbjct 30463 TCAACGATGGGTTGGCGCCAGCGCGGGCCGAGGAAAAACTTAACGTCGTGTCCGGGATTA 30404 Query 511 GTTGACCACTACA 523 ||||||||||||| Sbjct 30403 GTTGACCACTACA 30391 >seq2317456 Length=139 Score = 161 bits (178), Expect = 4e-37 Identities = 118/137 (86%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 246 TTTCGCCAGCGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGC 305 |||||||||||| ||||||| || ||||||||||||||||||||||| || ||||| ||| Sbjct 3 TTTCGCCAGCGGTTGTGGCGATACCGCATGCGCCAGAGCATGAGTCGACGAGGAAACTGC 62 Query 306 TGGGACAATGCGCCAATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACC 365 ||||| || || || ||||||||||| || |||||||||||||| || |||||||||||| Sbjct 63 TGGGATAACGCACCGATGGAGCGCGTATTTCGCAGCTTGAAAACAGAATGGATACCGACC 122 Query 366 ACGGGTTACCGAACGGC 382 ||| || ||||| || Sbjct 123 GTGGGCTATCGAACTGC 139 >seq1263210 Length=120 Score = 158 bits (174), Expect = 4e-36 Identities = 107/120 (89%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 404 CAGCCAATTCTTAATGCATCGGTACAACTGGATTCGCCCCCATCGATTCAACGGTGGGCT 463 |||||| || || |||||||| |||||||||||| | || |||| |||||||| |||| | Sbjct 120 CAGCCATTTTTTGATGCATCGCTACAACTGGATTAGGCCTCATCAATTCAACGATGGGTT 61 Query 464 GGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTACA 523 ||| ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 60 GGCTCCAGCGCGGGCCGAGGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTACA 1 >seq2362557 Length=145 Score = 152 bits (168), Expect = 2e-34 Identities = 120/144 (83%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 321 ATGGAGCGCGTGTTCCGCAGCTTGAAAACGGAGTGGATACCGACCACGGGTTACCGAACG 380 ||||||||||| || |||||||||||||| || |||||||||||| ||| || ||||| Sbjct 144 ATGGAGCGCGTATTTCGCAGCTTGAAAACAGAATGGATACCGACCGTGGGCTATCGAACT 85 Query 381 GCTCAAGAAGCCCAGCGCGATATCAGCCAATTCTTAATGCATCGGTACAACTGGATTCGC 440 || || |||| |||||||| |||||||| || || |||||||| |||||||||||| | Sbjct 84 GCACAGAAAGCACAGCGCGACATCAGCCATTTTTTGATGCATCGCTACAACTGGATTAGG 25 Query 441 CCCCATCGATTCAACGGTGGGCTG 464 || |||| |||||||| |||| || Sbjct 24 CCTCATCAATTCAACGATGGGTTG 1 >seq2652390 Length=188 Score = 129 bits (142), Expect = 2e-27 Identities = 134/173 (77%), Gaps = 2/173 (1%) Strand=Plus/Plus Query 135 CCGGACGCCGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGCCTGCACGAC-GACC 193 || ||||| || |||| || |||||||||||||||||| ||| || | | | || Sbjct 17 CCAGACGCTGAGCTGGTGATCAAAGCGCTGGATATGGCTTACGAGCA-GCGTGGCAGGCC 75 Query 194 TCATGGTCTGCTGGTTCACTCGGATCAAGGGTCGCAGTATGCGAGTCGTTTATTTCGCCA 253 | | |||||| | |||||||| || || ||||| ||||| || || | |||||||| Sbjct 76 TTCGGATCTGCTATTCCACTCGGACCAGGGATCGCAATATGCAAGCCGACTCTTTCGCCA 135 Query 254 GCGGCTGTGGCGTTATCGCATGCGCCAGAGCATGAGTCGCCGGGGAAATTGCT 306 |||| ||||||| || ||||||||||||||||||||||| || ||||| |||| Sbjct 136 GCGGTTGTGGCGATACCGCATGCGCCAGAGCATGAGTCGACGAGGAAACTGCT 188 >seq2815282 Length=243 Score = 123 bits (136), Expect = 9e-26 Identities = 123/158 (78%), Gaps = 1/158 (1%) Strand=Plus/Plus Query 23 GTGTGGTGCGGCGACCTCCCCTACATCTGGGCCCATGGGAAATGGCATTACCTGGCTGTC 82 || ||||||||||| || ||||||| ||||| || || || |||||||||||||||||| Sbjct 86 GTCTGGTGCGGCGATATCACCTACATTTGGGCGCAAGGAAAGTGGCATTACCTGGCTGTC 145 Query 83 GCGCTGGATCTTTGCTCGCGCCGGGTGGTGGCTTGGGCGTTGACCAGACACCCCGGACGC 142 | ||||||||||| |||| ||| | |||| |||||| || | || | || ||||| Sbjct 146 GTCCTGGATCTTTGTACGCGTCGGATCGTGGGCTGGGCGCTG-TCGGAAAAGCCAGACGC 204 Query 143 CGATCTGGCTATGCGGGCGCTGGATATGGCTTACCAGC 180 || |||| || |||||||||||||||||| ||| Sbjct 205 TGAGCTGGTGATCAAAGCGCTGGATATGGCTTACGAGC 242 >seq169770 Length=4274 Score = 98.7 bits (108), Expect = 4e-18 Identities = 59/62 (95%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 463 TGGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTAC 522 |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 4272 TGGCTCCAGCGCGGGCCGAGGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTAC 4213 Query 523 AG 524 || Sbjct 4212 AG 4211 >seq240294 Length=15375 Score = 96.9 bits (106), Expect = 1e-17 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 463 TGGCGCCAGCTCGGGCCGAAGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTAC 522 |||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 15373 TGGCTCCAGCGCGGGCCGAGGAAAAACTTAACGTCGTGTCCGGGATTAGTTGACCACTAC 15314 Query 523 A 523 | Sbjct 15313 A 15313 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1792474900544