Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001702.1 Length=226 Score E Sequences producing significant alignments: (Bits) Value seq2975416 322 6e-86 seq3014672 318 7e-85 seq3079416 304 2e-80 seq2655553 244 1e-62 seq2486329 158 1e-36 seq206164 77.0 4e-12 seq2630032 73.4 5e-11 >seq2975416 Length=538 Score = 322 bits (356), Expect = 6e-86 Identities = 207/226 (92%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60 |||||||||| ||||| ||||||||||||||||| |||||||| || || |||||||||| Sbjct 162 CGACGATGAAGCGGAAGATCCCGTAGAACAACGCAAACATGCCGGAAACCGCCATGGTTG 221 Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120 ||||||||||||||||||||||||| || || |||||||||||||||||||||| || | Sbjct 222 GGCGTGGCTTGCGCGAGAAGATGTAAAGAATCAGGAACAGCGCCACACCTTCCAGGGCGA 281 Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180 |||||||||||||||||||||||||||||||||| |||||||||||||| || || |||| Sbjct 282 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGGGCCGGGTCGCTGAAGGGTGGAAACA 341 Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226 |||| ||||||||||| |||||||||||||||||||||||||| || Sbjct 342 CCATGGCCCACGGCACGTCGGTCGGCTTGCCCCACAACTCGGCATT 387 >seq3014672 Length=762 Score = 318 bits (352), Expect = 7e-85 Identities = 206/226 (91%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60 |||||||||| ||||| ||||||||||||||||| |||||||| || || |||||||||| Sbjct 162 CGACGATGAAGCGGAAGATCCCGTAGAACAACGCAAACATGCCGGAAACTGCCATGGTTG 221 Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120 |||||||||||||||||||||| || || || |||||||||||||||||||||| || | Sbjct 222 GGCGTGGCTTGCGCGAGAAGATATAAAGAATCAGGAACAGCGCCACACCTTCCAGGGCGA 281 Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180 ||||||||||||||||||||||||| |||||||| |||||||||||||| || ||||||| Sbjct 282 ACTGGTAGAGCTGCGACGGATGGCGAGGCAGTTGCGCCGGGTCGCTGAAGGGTGGGAACA 341 Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226 |||| ||||||||||| ||| ||||||||||||||||||||||||| Sbjct 342 CCATGGCCCACGGCACGTCGCTCGGCTTGCCCCACAACTCGGCGTT 387 >seq3079416 Length=2120 Score = 304 bits (336), Expect = 2e-80 Identities = 203/226 (90%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60 |||||||||| ||||| ||||||||||||| ||||||||| || ||||| |||||||||| Sbjct 1654 CGACGATGAAGCGGAAGATCCCGTAGAACAGCGCGAACATCCCGGACACCGCCATGGTTG 1713 Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120 ||||||| ||||||||||| | ||||||||| ||||||| ||||||||||||| || | Sbjct 1714 GGCGTGGTTTGCGCGAGAACAGGTAGAGGATGAGGAACAATGCCACACCTTCCAGGGCGA 1773 Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180 | ||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||| Sbjct 1774 ATTGGTACAGCTGCGACGGATGGCGCGGCAGTTGCGCCGGGTCGCTGAACGGCGGGAACA 1833 Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226 |||| ||||||||||| ||||| ||||||||||||| ||||||||| Sbjct 1834 CCATGGCCCACGGCACGTCGGTGGGCTTGCCCCACAGCTCGGCGTT 1879 >seq2655553 Length=188 Score = 244 bits (270), Expect = 1e-62 Identities = 161/178 (90%), Gaps = 0/178 (0%) Strand=Plus/Minus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60 ||||||| || ||||| ||||||||||||| ||||||||| ||||||||||||||||||| Sbjct 178 CGACGATAAAGCGGAAGATCCCGTAGAACAGCGCGAACATCCCCGACACGGCCATGGTTG 119 Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120 ||||||||||||||||||||||||| || || |||||||| ||||||||||||| || | Sbjct 118 GGCGTGGCTTGCGCGAGAAGATGTACAGAATCAGGAACAGTGCCACACCTTCCAGGGCGA 59 Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAA 178 |||||||||||||||||||||||||||||| || |||||||||||||| || ||||| Sbjct 58 ACTGGTAGAGCTGCGACGGATGGCGCGGCAACTGCGCCGGGTCGCTGAATGGCGGGAA 1 >seq2486329 Length=165 Score = 158 bits (174), Expect = 1e-36 Identities = 101/110 (92%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 117 GCAAACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGG 176 || ||||||||||||||||||||||||||||||| || |||||||||||||| || ||| Sbjct 164 GCGAACTGGTAGAGCTGCGACGGATGGCGCGGCAACTGCGCCGGGTCGCTGAATGGCGGG 105 Query 177 AACACCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226 |||||||| ||||||||||| ||||||||||||||||||| ||||||||| Sbjct 104 AACACCATGGCCCACGGCACGTCGGTCGGCTTGCCCCACAGCTCGGCGTT 55 >seq206164 Length=554 Score = 77.0 bits (84), Expect = 4e-12 Identities = 45/47 (96%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 180 ACCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226 ||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 454 ACCATGGCCCACGGCACGTCGGTCGGCTTGCCCCACAACTCGGCGTT 500 Score = 73.4 bits (80), Expect = 5e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCC 53 ||||||| || ||||| ||||||||||||| ||||||||| |||||||||||| Sbjct 271 CGACGATAAAGCGGAAGATCCCGTAGAACAGCGCGAACATCCCCGACACGGCC 323 >seq2630032 Length=184 Score = 73.4 bits (80), Expect = 5e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCC 53 ||||||| || ||||| ||||||||||||| ||||||||| |||||||||||| Sbjct 53 CGACGATAAAGCGGAAGATCCCGTAGAACAGCGCGAACATCCCCGACACGGCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 605329951005