Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001702.1
Length=226
Score E
Sequences producing significant alignments: (Bits) Value
seq2975416 322 6e-86
seq3014672 318 7e-85
seq3079416 304 2e-80
seq2655553 244 1e-62
seq2486329 158 1e-36
seq206164 77.0 4e-12
seq2630032 73.4 5e-11
>seq2975416
Length=538
Score = 322 bits (356), Expect = 6e-86
Identities = 207/226 (92%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60
|||||||||| ||||| ||||||||||||||||| |||||||| || || ||||||||||
Sbjct 162 CGACGATGAAGCGGAAGATCCCGTAGAACAACGCAAACATGCCGGAAACCGCCATGGTTG 221
Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120
||||||||||||||||||||||||| || || |||||||||||||||||||||| || |
Sbjct 222 GGCGTGGCTTGCGCGAGAAGATGTAAAGAATCAGGAACAGCGCCACACCTTCCAGGGCGA 281
Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180
|||||||||||||||||||||||||||||||||| |||||||||||||| || || ||||
Sbjct 282 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGGGCCGGGTCGCTGAAGGGTGGAAACA 341
Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226
|||| ||||||||||| |||||||||||||||||||||||||| ||
Sbjct 342 CCATGGCCCACGGCACGTCGGTCGGCTTGCCCCACAACTCGGCATT 387
>seq3014672
Length=762
Score = 318 bits (352), Expect = 7e-85
Identities = 206/226 (91%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60
|||||||||| ||||| ||||||||||||||||| |||||||| || || ||||||||||
Sbjct 162 CGACGATGAAGCGGAAGATCCCGTAGAACAACGCAAACATGCCGGAAACTGCCATGGTTG 221
Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120
|||||||||||||||||||||| || || || |||||||||||||||||||||| || |
Sbjct 222 GGCGTGGCTTGCGCGAGAAGATATAAAGAATCAGGAACAGCGCCACACCTTCCAGGGCGA 281
Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180
||||||||||||||||||||||||| |||||||| |||||||||||||| || |||||||
Sbjct 282 ACTGGTAGAGCTGCGACGGATGGCGAGGCAGTTGCGCCGGGTCGCTGAAGGGTGGGAACA 341
Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226
|||| ||||||||||| ||| |||||||||||||||||||||||||
Sbjct 342 CCATGGCCCACGGCACGTCGCTCGGCTTGCCCCACAACTCGGCGTT 387
>seq3079416
Length=2120
Score = 304 bits (336), Expect = 2e-80
Identities = 203/226 (90%), Gaps = 0/226 (0%)
Strand=Plus/Plus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60
|||||||||| ||||| ||||||||||||| ||||||||| || ||||| ||||||||||
Sbjct 1654 CGACGATGAAGCGGAAGATCCCGTAGAACAGCGCGAACATCCCGGACACCGCCATGGTTG 1713
Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120
||||||| ||||||||||| | ||||||||| ||||||| ||||||||||||| || |
Sbjct 1714 GGCGTGGTTTGCGCGAGAACAGGTAGAGGATGAGGAACAATGCCACACCTTCCAGGGCGA 1773
Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAACA 180
| ||||| |||||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct 1774 ATTGGTACAGCTGCGACGGATGGCGCGGCAGTTGCGCCGGGTCGCTGAACGGCGGGAACA 1833
Query 181 CCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226
|||| ||||||||||| ||||| ||||||||||||| |||||||||
Sbjct 1834 CCATGGCCCACGGCACGTCGGTGGGCTTGCCCCACAGCTCGGCGTT 1879
>seq2655553
Length=188
Score = 244 bits (270), Expect = 1e-62
Identities = 161/178 (90%), Gaps = 0/178 (0%)
Strand=Plus/Minus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCCATGGTTG 60
||||||| || ||||| ||||||||||||| ||||||||| |||||||||||||||||||
Sbjct 178 CGACGATAAAGCGGAAGATCCCGTAGAACAGCGCGAACATCCCCGACACGGCCATGGTTG 119
Query 61 GGCGTGGCTTGCGCGAGAAGATGTAGAGGATAAGGAACAGCGCCACACCTTCCAACGCAA 120
||||||||||||||||||||||||| || || |||||||| ||||||||||||| || |
Sbjct 118 GGCGTGGCTTGCGCGAGAAGATGTACAGAATCAGGAACAGTGCCACACCTTCCAGGGCGA 59
Query 121 ACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGGAA 178
|||||||||||||||||||||||||||||| || |||||||||||||| || |||||
Sbjct 58 ACTGGTAGAGCTGCGACGGATGGCGCGGCAACTGCGCCGGGTCGCTGAATGGCGGGAA 1
>seq2486329
Length=165
Score = 158 bits (174), Expect = 1e-36
Identities = 101/110 (92%), Gaps = 0/110 (0%)
Strand=Plus/Minus
Query 117 GCAAACTGGTAGAGCTGCGACGGATGGCGCGGCAGTTGTGCCGGGTCGCTGAACGGGGGG 176
|| ||||||||||||||||||||||||||||||| || |||||||||||||| || |||
Sbjct 164 GCGAACTGGTAGAGCTGCGACGGATGGCGCGGCAACTGCGCCGGGTCGCTGAATGGCGGG 105
Query 177 AACACCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226
|||||||| ||||||||||| ||||||||||||||||||| |||||||||
Sbjct 104 AACACCATGGCCCACGGCACGTCGGTCGGCTTGCCCCACAGCTCGGCGTT 55
>seq206164
Length=554
Score = 77.0 bits (84), Expect = 4e-12
Identities = 45/47 (96%), Gaps = 0/47 (0%)
Strand=Plus/Plus
Query 180 ACCATCGCCCACGGCACATCGGTCGGCTTGCCCCACAACTCGGCGTT 226
||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 454 ACCATGGCCCACGGCACGTCGGTCGGCTTGCCCCACAACTCGGCGTT 500
Score = 73.4 bits (80), Expect = 5e-11
Identities = 48/53 (91%), Gaps = 0/53 (0%)
Strand=Plus/Plus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCC 53
||||||| || ||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 271 CGACGATAAAGCGGAAGATCCCGTAGAACAGCGCGAACATCCCCGACACGGCC 323
>seq2630032
Length=184
Score = 73.4 bits (80), Expect = 5e-11
Identities = 48/53 (91%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 1 CGACGATGAAACGGAAAATCCCGTAGAACAACGCGAACATGCCCGACACGGCC 53
||||||| || ||||| ||||||||||||| ||||||||| ||||||||||||
Sbjct 53 CGACGATAAAGCGGAAGATCCCGTAGAACAGCGCGAACATCCCCGACACGGCC 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 605329951005
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |