Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001720.1
Length=447
Score E
Sequences producing significant alignments: (Bits) Value
seq94483 536 3e-150
seq217765 517 3e-144
seq2911236 493 3e-137
seq2939622 484 2e-134
seq2352224 176 1e-41
seq2838895 143 7e-32
seq2769309 111 4e-22
>seq94483
Length=1090
Score = 536 bits (594), Expect = 3e-150
Identities = 362/405 (89%), Gaps = 0/405 (0%)
Strand=Plus/Minus
Query 43 CAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATTCGCGATTG 102
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1090 CAACCAGCAAGGGCGTGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATTCGTGATTG 1031
Query 103 GGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACACCGCAGGGCCGGTGGGTTTTGG 162
||| ||||| |||||||||||||||||||| || ||||||| |||||||| ||||||||
Sbjct 1030 GGGTCAGGGTTTCGAGTTCAACTTCAAGTCGGGCTACACCGATGGGCCGGTTGGTTTTGG 971
Query 163 CCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTCCGGAGGCGACCTCAACGACAA 222
|||||| ||||||| ||||| || ||||| ||||| ||||| || |||||||| |||||
Sbjct 970 CCTCGATCTGCAGGCCTTCTATGGCTTGAAACTGGACTCCGGTGGTGACCTCAATGACAA 911
Query 223 GGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCTGGACAACGGCAAATCCGCCGA 282
||||||||| | || ||||||||||||||||||||| |||||||||| |||||||||||
Sbjct 910 GGACCACCAAGGTCGCTACCCCGGCAGCATGTTCCCGTTGGACAACGGTAAATCCGCCGA 851
Query 283 CCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTTCGCCAAAGATGAGCTGCGTGT 342
|||||| || || || ||||| || |||||||||||||| ||||| ||||||||||| ||
Sbjct 850 CCAGTTTGGTGTACTGAGCCCCACATTCAAGATGCGCTTTGCCAAGGATGAGCTGCGCGT 791
Query 343 GGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGCCGCCTGTACCAGCA 402
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 790 GGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGGCGCCTGTACCAGCA 731
Query 403 GACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAGCGACTT 447
|||||| ||||| ||||| |||||||||| |||||| | ||| ||
Sbjct 730 GACCAACACCGGTGTGCAGCTGGTGTCCAAGGACCTTACCGATTT 686
>seq217765
Length=1024
Score = 517 bits (572), Expect = 3e-144
Identities = 334/366 (91%), Gaps = 0/366 (0%)
Strand=Plus/Minus
Query 82 GGCCCACAGCATTCGCGATTGGGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACAC 141
||| || ||| | || |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1024 GGCGCATAGCGTGCGGGATTGGGGCCAGGGTTTCGAGTTCAACTTCAAGTCCGGCTACAC 965
Query 142 CGCAGGGCCGGTGGGTTTTGGCCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTC 201
|| |||||||||||||||||||| |||||||||||||| ||||| ||||| || || ||
Sbjct 964 CGATGGGCCGGTGGGTTTTGGCCTGGACTTGCAGGCGTTTTACGGCTTGAAACTCGACTC 905
Query 202 CGGAGGCGACCTCAACGACAAGGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCT 261
||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||| |
Sbjct 904 CGGCGGCGACCTCAACGACAAGGATCACCAGGGCCGTTACCCAGGCAGCATGTTCCCGTT 845
Query 262 GGACAACGGCAAATCCGCCGACCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTT 321
|||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| ||
Sbjct 844 GGACAACGGCAAATCCGCCGACCAGTTCGGTGTACTCAGCCCGACCTTCAAGATGCGTTT 785
Query 322 CGCCAAAGATGAGCTGCGTGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACAC 381
|||||||||||| ||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 784 CGCCAAAGATGAACTGCGGGTTGGCACGCTGTATGGCAACAACCCGGTACTGGCCAACAC 725
Query 382 CGACGGCCGCCTGTACCAGCAGACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAG 441
||||||||||||||||||||||||||||||||| ||||||||||| |||| |||||||||
Sbjct 724 CGACGGCCGCCTGTACCAGCAGACCAATACCGGCGTGCAACTGGTCTCCAAGGACCTCAG 665
Query 442 CGACTT 447
||||||
Sbjct 664 CGACTT 659
>seq2911236
Length=351
Score = 493 bits (546), Expect = 3e-137
Identities = 320/351 (91%), Gaps = 0/351 (0%)
Strand=Plus/Minus
Query 43 CAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATTCGCGATTG 102
||||||||| ||||| |||||||||||||||||||||||||||||||||||||| |||||
Sbjct 351 CAACCAGCAAGGGCGTGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATTCGTGATTG 292
Query 103 GGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACACCGCAGGGCCGGTGGGTTTTGG 162
||||||||| |||||||||||||||||||| || ||||||| |||||||| ||||||||
Sbjct 291 GGGCCAGGGTTTCGAGTTCAACTTCAAGTCGGGCTACACCGATGGGCCGGTTGGTTTTGG 232
Query 163 CCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTCCGGAGGCGACCTCAACGACAA 222
||| || ||||||| ||||| || ||||| ||||||||||| || |||||||| |||||
Sbjct 231 CCTTGATCTGCAGGCCTTCTATGGCTTGAAACTGGATTCCGGTGGTGACCTCAATGACAA 172
Query 223 GGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCTGGACAACGGCAAATCCGCCGA 282
||| |||||| |||| ||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct 171 GGATCACCAGGGCCGCTACCCCGGCAGCATGTTCCCGTTGGACGACGGCAAATCCGCCGA 112
Query 283 CCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTTCGCCAAAGATGAGCTGCGTGT 342
|||||| |||||||| ||||| ||||||||||||||||| ||||| ||||||||||| ||
Sbjct 111 CCAGTTTGGCGTGCTGAGCCCCACGTTCAAGATGCGCTTTGCCAAGGATGAGCTGCGCGT 52
Query 343 GGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGCCGCCT 393
||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 51 GGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGGCGCCT 1
>seq2939622
Length=415
Score = 484 bits (536), Expect = 2e-134
Identities = 327/366 (89%), Gaps = 0/366 (0%)
Strand=Plus/Plus
Query 82 GGCCCACAGCATTCGCGATTGGGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACAC 141
||| || ||| | || |||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 1 GGCGCATAGCGTGCGGGATTGGGGCCAGGGTTTCGAGTTCAACTTCAAGTCCGGCTACAC 60
Query 142 CGCAGGGCCGGTGGGTTTTGGCCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTC 201
|| ||| |||||||||||||| || || |||||||||| ||||| |||| || |||||
Sbjct 61 CGAAGGCCCGGTGGGTTTTGGTCTGGATCTGCAGGCGTTTTACGGTCTGAAACTCGATTC 120
Query 202 CGGAGGCGACCTCAACGACAAGGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCT 261
||| ||||||||||||||||| ||||||||| |||| |||||||||||||||||||||||
Sbjct 121 CGGCGGCGACCTCAACGACAAAGACCACCAGGGCCGCTACCCCGGCAGCATGTTCCCGCT 180
Query 262 GGACAACGGCAAATCCGCCGACCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTT 321
||| |||||||| ||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 181 GGATAACGGCAAGTCCGCCGACCAGTTCGGCGTGCTCAGCCCAACGTTCAAAATGCGCTT 240
Query 322 CGCCAAAGATGAGCTGCGTGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACAC 381
|||||| ||||||||||| || ||||| ||| ||||||||||||||| |||||||||||
Sbjct 241 CGCCAAGGATGAGCTGCGCGTCGGCACCTTGTTCGGCAACAACCCGGTACTGGCCAACAC 300
Query 382 CGACGGCCGCCTGTACCAGCAGACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAG 441
||||||||||||||||||||||||||| || || ||||||||||| |||| ||||||||
Sbjct 301 CGACGGCCGCCTGTACCAGCAGACCAACACTGGCGTGCAACTGGTCTCCAAAGACCTCAG 360
Query 442 CGACTT 447
||||||
Sbjct 361 CGACTT 366
>seq2352224
Length=144
Score = 176 bits (194), Expect = 1e-41
Identities = 109/117 (93%), Gaps = 0/117 (0%)
Strand=Plus/Plus
Query 331 TGAGCTGCGTGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGCCG 390
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1 TGAGCTGCGCGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGGCG 60
Query 391 CCTGTACCAGCAGACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAGCGACTT 447
||| |||||||||||||||||||| ||||| |||||||||| |||||| ||||| ||
Sbjct 61 CCTTTACCAGCAGACCAATACCGGCGTGCAGCTGGTGTCCAAGGACCTTAGCGATTT 117
>seq2838895
Length=260
Score = 143 bits (158), Expect = 7e-32
Identities = 97/109 (89%), Gaps = 0/109 (0%)
Strand=Plus/Minus
Query 35 CGCTATCTCAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATT 94
||||||||||||||||| || || ||||||||| ||||||||||||||| || ||| |
Sbjct 110 CGCTATCTCAACCAGCAAGGTCGTGATGTGGTGGGCAGCAACGCCAAGGCGCATAGCGTG 51
Query 95 CGCGATTGGGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACACCG 143
|| |||||||||||||| ||||||||||||||||||||||| |||||||
Sbjct 50 CGGGATTGGGGCCAGGGTTTCGAGTTCAACTTCAAGTCCGGCTACACCG 2
>seq2769309
Length=221
Score = 111 bits (122), Expect = 4e-22
Identities = 67/71 (94%), Gaps = 0/71 (0%)
Strand=Plus/Plus
Query 35 CGCTATCTCAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATT 94
||||| ||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 151 CGCTACCTCAACCAGCAAGGGCGTGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATT 210
Query 95 CGCGATTGGGG 105
|| ||||||||
Sbjct 211 CGTGATTGGGG 221
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1286984573920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |