Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001720.1 Length=447 Score E Sequences producing significant alignments: (Bits) Value seq94483 536 3e-150 seq217765 517 3e-144 seq2911236 493 3e-137 seq2939622 484 2e-134 seq2352224 176 1e-41 seq2838895 143 7e-32 seq2769309 111 4e-22 >seq94483 Length=1090 Score = 536 bits (594), Expect = 3e-150 Identities = 362/405 (89%), Gaps = 0/405 (0%) Strand=Plus/Minus Query 43 CAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATTCGCGATTG 102 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 1090 CAACCAGCAAGGGCGTGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATTCGTGATTG 1031 Query 103 GGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACACCGCAGGGCCGGTGGGTTTTGG 162 ||| ||||| |||||||||||||||||||| || ||||||| |||||||| |||||||| Sbjct 1030 GGGTCAGGGTTTCGAGTTCAACTTCAAGTCGGGCTACACCGATGGGCCGGTTGGTTTTGG 971 Query 163 CCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTCCGGAGGCGACCTCAACGACAA 222 |||||| ||||||| ||||| || ||||| ||||| ||||| || |||||||| ||||| Sbjct 970 CCTCGATCTGCAGGCCTTCTATGGCTTGAAACTGGACTCCGGTGGTGACCTCAATGACAA 911 Query 223 GGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCTGGACAACGGCAAATCCGCCGA 282 ||||||||| | || ||||||||||||||||||||| |||||||||| ||||||||||| Sbjct 910 GGACCACCAAGGTCGCTACCCCGGCAGCATGTTCCCGTTGGACAACGGTAAATCCGCCGA 851 Query 283 CCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTTCGCCAAAGATGAGCTGCGTGT 342 |||||| || || || ||||| || |||||||||||||| ||||| ||||||||||| || Sbjct 850 CCAGTTTGGTGTACTGAGCCCCACATTCAAGATGCGCTTTGCCAAGGATGAGCTGCGCGT 791 Query 343 GGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGCCGCCTGTACCAGCA 402 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 790 GGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGGCGCCTGTACCAGCA 731 Query 403 GACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAGCGACTT 447 |||||| ||||| ||||| |||||||||| |||||| | ||| || Sbjct 730 GACCAACACCGGTGTGCAGCTGGTGTCCAAGGACCTTACCGATTT 686 >seq217765 Length=1024 Score = 517 bits (572), Expect = 3e-144 Identities = 334/366 (91%), Gaps = 0/366 (0%) Strand=Plus/Minus Query 82 GGCCCACAGCATTCGCGATTGGGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACAC 141 ||| || ||| | || |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1024 GGCGCATAGCGTGCGGGATTGGGGCCAGGGTTTCGAGTTCAACTTCAAGTCCGGCTACAC 965 Query 142 CGCAGGGCCGGTGGGTTTTGGCCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTC 201 || |||||||||||||||||||| |||||||||||||| ||||| ||||| || || || Sbjct 964 CGATGGGCCGGTGGGTTTTGGCCTGGACTTGCAGGCGTTTTACGGCTTGAAACTCGACTC 905 Query 202 CGGAGGCGACCTCAACGACAAGGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCT 261 ||| |||||||||||||||||||| |||||| |||||||||| ||||||||||||||| | Sbjct 904 CGGCGGCGACCTCAACGACAAGGATCACCAGGGCCGTTACCCAGGCAGCATGTTCCCGTT 845 Query 262 GGACAACGGCAAATCCGCCGACCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTT 321 |||||||||||||||||||||||||||||| || ||||||||||| ||||||||||| || Sbjct 844 GGACAACGGCAAATCCGCCGACCAGTTCGGTGTACTCAGCCCGACCTTCAAGATGCGTTT 785 Query 322 CGCCAAAGATGAGCTGCGTGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACAC 381 |||||||||||| ||||| || ||||||||||| |||||||||||||| ||||||||||| Sbjct 784 CGCCAAAGATGAACTGCGGGTTGGCACGCTGTATGGCAACAACCCGGTACTGGCCAACAC 725 Query 382 CGACGGCCGCCTGTACCAGCAGACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAG 441 ||||||||||||||||||||||||||||||||| ||||||||||| |||| ||||||||| Sbjct 724 CGACGGCCGCCTGTACCAGCAGACCAATACCGGCGTGCAACTGGTCTCCAAGGACCTCAG 665 Query 442 CGACTT 447 |||||| Sbjct 664 CGACTT 659 >seq2911236 Length=351 Score = 493 bits (546), Expect = 3e-137 Identities = 320/351 (91%), Gaps = 0/351 (0%) Strand=Plus/Minus Query 43 CAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATTCGCGATTG 102 ||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||| Sbjct 351 CAACCAGCAAGGGCGTGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATTCGTGATTG 292 Query 103 GGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACACCGCAGGGCCGGTGGGTTTTGG 162 ||||||||| |||||||||||||||||||| || ||||||| |||||||| |||||||| Sbjct 291 GGGCCAGGGTTTCGAGTTCAACTTCAAGTCGGGCTACACCGATGGGCCGGTTGGTTTTGG 232 Query 163 CCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTCCGGAGGCGACCTCAACGACAA 222 ||| || ||||||| ||||| || ||||| ||||||||||| || |||||||| ||||| Sbjct 231 CCTTGATCTGCAGGCCTTCTATGGCTTGAAACTGGATTCCGGTGGTGACCTCAATGACAA 172 Query 223 GGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCTGGACAACGGCAAATCCGCCGA 282 ||| |||||| |||| ||||||||||||||||||||| ||||| |||||||||||||||| Sbjct 171 GGATCACCAGGGCCGCTACCCCGGCAGCATGTTCCCGTTGGACGACGGCAAATCCGCCGA 112 Query 283 CCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTTCGCCAAAGATGAGCTGCGTGT 342 |||||| |||||||| ||||| ||||||||||||||||| ||||| ||||||||||| || Sbjct 111 CCAGTTTGGCGTGCTGAGCCCCACGTTCAAGATGCGCTTTGCCAAGGATGAGCTGCGCGT 52 Query 343 GGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGCCGCCT 393 ||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 51 GGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGGCGCCT 1 >seq2939622 Length=415 Score = 484 bits (536), Expect = 2e-134 Identities = 327/366 (89%), Gaps = 0/366 (0%) Strand=Plus/Plus Query 82 GGCCCACAGCATTCGCGATTGGGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACAC 141 ||| || ||| | || |||||||||||||| ||||||||||||||||||||||| ||||| Sbjct 1 GGCGCATAGCGTGCGGGATTGGGGCCAGGGTTTCGAGTTCAACTTCAAGTCCGGCTACAC 60 Query 142 CGCAGGGCCGGTGGGTTTTGGCCTCGACTTGCAGGCGTTCTACGGGTTGAAGCTGGATTC 201 || ||| |||||||||||||| || || |||||||||| ||||| |||| || ||||| Sbjct 61 CGAAGGCCCGGTGGGTTTTGGTCTGGATCTGCAGGCGTTTTACGGTCTGAAACTCGATTC 120 Query 202 CGGAGGCGACCTCAACGACAAGGACCACCAGAGCCGTTACCCCGGCAGCATGTTCCCGCT 261 ||| ||||||||||||||||| ||||||||| |||| ||||||||||||||||||||||| Sbjct 121 CGGCGGCGACCTCAACGACAAAGACCACCAGGGCCGCTACCCCGGCAGCATGTTCCCGCT 180 Query 262 GGACAACGGCAAATCCGCCGACCAGTTCGGCGTGCTCAGCCCGACGTTCAAGATGCGCTT 321 ||| |||||||| ||||||||||||||||||||||||||||| |||||||| |||||||| Sbjct 181 GGATAACGGCAAGTCCGCCGACCAGTTCGGCGTGCTCAGCCCAACGTTCAAAATGCGCTT 240 Query 322 CGCCAAAGATGAGCTGCGTGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACAC 381 |||||| ||||||||||| || ||||| ||| ||||||||||||||| ||||||||||| Sbjct 241 CGCCAAGGATGAGCTGCGCGTCGGCACCTTGTTCGGCAACAACCCGGTACTGGCCAACAC 300 Query 382 CGACGGCCGCCTGTACCAGCAGACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAG 441 ||||||||||||||||||||||||||| || || ||||||||||| |||| |||||||| Sbjct 301 CGACGGCCGCCTGTACCAGCAGACCAACACTGGCGTGCAACTGGTCTCCAAAGACCTCAG 360 Query 442 CGACTT 447 |||||| Sbjct 361 CGACTT 366 >seq2352224 Length=144 Score = 176 bits (194), Expect = 1e-41 Identities = 109/117 (93%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 331 TGAGCTGCGTGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGCCG 390 ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1 TGAGCTGCGCGTGGGCACGCTGTACGGCAACAACCCGGTGCTGGCCAACACCGACGGGCG 60 Query 391 CCTGTACCAGCAGACCAATACCGGGGTGCAACTGGTGTCCAGGGACCTCAGCGACTT 447 ||| |||||||||||||||||||| ||||| |||||||||| |||||| ||||| || Sbjct 61 CCTTTACCAGCAGACCAATACCGGCGTGCAGCTGGTGTCCAAGGACCTTAGCGATTT 117 >seq2838895 Length=260 Score = 143 bits (158), Expect = 7e-32 Identities = 97/109 (89%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 35 CGCTATCTCAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATT 94 ||||||||||||||||| || || ||||||||| ||||||||||||||| || ||| | Sbjct 110 CGCTATCTCAACCAGCAAGGTCGTGATGTGGTGGGCAGCAACGCCAAGGCGCATAGCGTG 51 Query 95 CGCGATTGGGGCCAGGGGTTCGAGTTCAACTTCAAGTCCGGTTACACCG 143 || |||||||||||||| ||||||||||||||||||||||| ||||||| Sbjct 50 CGGGATTGGGGCCAGGGTTTCGAGTTCAACTTCAAGTCCGGCTACACCG 2 >seq2769309 Length=221 Score = 111 bits (122), Expect = 4e-22 Identities = 67/71 (94%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 35 CGCTATCTCAACCAGCAGGGGCGCGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATT 94 ||||| ||||||||||| ||||| |||||||||||||||||||||||||||||||||||| Sbjct 151 CGCTACCTCAACCAGCAAGGGCGTGATGTGGTGAACAGCAACGCCAAGGCCCACAGCATT 210 Query 95 CGCGATTGGGG 105 || |||||||| Sbjct 211 CGTGATTGGGG 221 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1286984573920