Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001721.1 Length=387 Score E Sequences producing significant alignments: (Bits) Value seq3087396 389 9e-106 seq2996834 273 5e-71 seq2952911 253 4e-65 seq199714 253 4e-65 seq2795535 150 4e-34 seq964524 145 2e-32 seq1641046 105 1e-20 seq1193000 105 1e-20 >seq3087396 Length=5087 Score = 389 bits (430), Expect = 9e-106 Identities = 316/387 (82%), Gaps = 10/387 (3%) Strand=Plus/Plus Query 1 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGG 60 |||||||||||||||||||||||||||||||||| ||||||| || || ||||| | || Sbjct 1903 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGCTGTCCACCGCCGAGGCCAATATCGG 1962 Query 61 TTCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCA 120 ||| |||||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct 1963 TTCGATCTTCGGCATCGGCTTTGCGGCGTGGAGTGGCGGCGCGCTGCAGTTTATCAACCA 2022 Query 121 GTACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCG 180 |||||| |||||||| || |||||||| || ||||| ||||| |||||||| || ||||| Sbjct 2023 GTACGGCCTGAACGATTTTATCGCCCGGGCGCGCTATCTGGCCGAGCAGTACGGAGAGCG 2082 Query 181 CTTCTCGCCGCNNNNNNNNNNNNTGGAGAAAGCCGCGCAGGGTGAAGTGTTCCGGTAATC 240 ||| |||| | | |||||||| || || || | | || | | ||| Sbjct 2083 TTTCGCGCCACCGGCGTTGTTGCTCGAGAAAGCGGCACAAGGCGCAACCTTTTGCTGATC 2142 Query 241 AAAATGTAGGAGGGGAGAGCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTG 300 || |||| |||||||||| | || |||||||||| |||||||||||| Sbjct 2143 AA-------CCGGGG---GCTTGCTTTGCATGTACCTTTCAAGGCACGCTCTGGGGTGTT 2192 Query 301 CAATATTCCCATCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAA 360 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2193 CAATATTCCCATCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAA 2252 Query 361 CCGATATTCTGCGCCCCGCTTTGATCG 387 ||||||| ||||| || | | |||||| Sbjct 2253 CCGATATCCTGCGTCCGGGTCTGATCG 2279 >seq2996834 Length=644 Score = 273 bits (302), Expect = 5e-71 Identities = 193/225 (86%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 1 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGG 60 |||||||||||| |||||||||||||||||||||| ||| ||||| || |||||||| || Sbjct 149 CGAAACCGTGCGTTGTGTGGAGGAGGGCGTGTTGAGGTCGACGGCTGACGCCAACGTCGG 208 Query 61 TTCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCA 120 |||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| Sbjct 209 CTCAATCTTCGGCATAGGCTTTGCCGCGTGGAGTGGCGGCGCGCTGCAGTTTATCAACCA 268 Query 121 GTACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCG 180 |||||| ||||||||||| |||||||| || ||||| ||||| |||||||| |||||||| Sbjct 269 GTACGGCCTGAACGACTTTATCGCCCGGGCGCGCTATCTGGCCGAGCAGTACGGGGAGCG 328 Query 181 CTTCTCGCCGCNNNNNNNNNNNNTGGAGAAAGCCGCGCAGGGTGA 225 ||||||||| | |||| ||||| |||||||| || Sbjct 329 CTTCTCGCCCCCGGCTCTGCTGCTGGAAAAAGCAGCGCAGGGAGA 373 Score = 172 bits (190), Expect = 1e-40 Identities = 112/122 (92%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 252 GGGGAGAGCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCA 311 || |||| ||||||||| ||| || |||||||||||||||||||||||||| |||||||| Sbjct 522 GGCGAGA-CTTGCTTTGCAGGGGTGTTTCAAGGCAGGCTCTGGGGTGTGCATTATTCCCA 580 Query 312 TCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTG 371 | ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| Sbjct 581 CCACCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAAACCGATATCCTG 640 Query 372 CG 373 || Sbjct 641 CG 642 >seq2952911 Length=454 Score = 253 bits (280), Expect = 4e-65 Identities = 170/190 (89%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 2 GAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGGT 61 ||||||||||| || |||||||||||||||||| |||||||||||||||||||||| || Sbjct 424 GAAACCGTGCGGTGCGTGGAGGAGGGCGTGTTGCTGTCCACGGCGGATGCCAACGTCGGG 365 Query 62 TCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCAG 121 || ||||||||||| || |||||||||||||||||||| ||||||||||||||||||||| Sbjct 364 TCGATCTTCGGCATAGGTTTTGCCGCGTGGAGTGGCGGTGCGTTGCAGTTTATCAACCAG 305 Query 122 TACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCGC 181 || || |||||||||| || ||||| || ||||||||||| ||||| || |||||||| Sbjct 304 TATGGCTTGAACGACTTTATTGCCCGGGCGCGCTACCTGGCCGAGCAATACGGGGAGCGG 245 Query 182 TTCTCGCCGC 191 |||||||||| Sbjct 244 TTCTCGCCGC 235 >seq199714 Length=3854 Score = 253 bits (280), Expect = 4e-65 Identities = 170/190 (89%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 2 GAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGGT 61 ||||||||||| || ||||||||||||||||||||||||||||||||||||||||| || Sbjct 1576 GAAACCGTGCGGTGCGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTCGGC 1517 Query 62 TCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCAG 121 || ||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1516 TCGATCTTCGGCATTGGCTTTGCCGCGTGGAGTGGCGGCGCGCTGCAGTTTATCAACCAG 1457 Query 122 TACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCGC 181 || || |||||||||||||| ||| | || ||||| |||| ||||| ||||| || || Sbjct 1456 TATGGCCTGAACGACTTCATTGCCAGGGCACGCTATTTGGCGGAGCAATATGGCGAACGG 1397 Query 182 TTCTCGCCGC 191 |||||||||| Sbjct 1396 TTCTCGCCGC 1387 Score = 163 bits (180), Expect = 6e-38 Identities = 113/128 (88%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 260 CTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCATCGCCGTG 319 ||||||||| || || ||||||||||||||||||| |||||| |||||||||| ||||| Sbjct 1207 CTTGCTTTGCTGGGGTGTTTCAAGGCAGGCTCTGGGCTGTGCATTATTCCCATCACCGTG 1148 Query 320 TCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTGCGCCCCGC 379 ||||| || ||||||||||||||||||||| ||||||||||||||||| ||||| || | Sbjct 1147 TCAGGGATGTTTTATGTCGCTACGCGTCTGTATCCTGGAAACCGATATCCTGCGTCCAGG 1088 Query 380 TTTGATCG 387 ||||||| Sbjct 1087 CTTGATCG 1080 >seq2795535 Length=232 Score = 150 bits (166), Expect = 4e-34 Identities = 99/108 (92%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 252 GGGGAGAGCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCA 311 || |||| ||||||||| ||| || |||| ||||||||||||||||||||| |||||||| Sbjct 126 GGCGAGA-CTTGCTTTGCAGGGGTGTTTCGAGGCAGGCTCTGGGGTGTGCATTATTCCCA 184 Query 312 TCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAA 359 || ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 185 TCACCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAA 232 >seq964524 Length=113 Score = 145 bits (160), Expect = 2e-32 Identities = 92/100 (92%), Gaps = 0/100 (0%) Strand=Plus/Plus Query 260 CTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCATCGCCGTG 319 ||||||||| || || ||||||||||||||||||| |||||| |||||||||| ||||| Sbjct 14 CTTGCTTTGCTGGGGTGTTTCAAGGCAGGCTCTGGGCTGTGCATTATTCCCATCACCGTG 73 Query 320 TCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAA 359 |||||||||||||||||||||||||||||| ||||||||| Sbjct 74 TCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAA 113 >seq1641046 Length=127 Score = 105 bits (116), Expect = 1e-20 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 315 CCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTGCGC 374 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 126 CCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAAACCGATATCCTGCGT 67 Query 375 CCCGCTTTGATCG 387 || | ||||||| Sbjct 66 CCGGGCTTGATCG 54 >seq1193000 Length=118 Score = 105 bits (116), Expect = 1e-20 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 315 CCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTGCGC 374 ||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| Sbjct 117 CCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAAACCGATATCCTGCGT 58 Query 375 CCCGCTTTGATCG 387 || | ||||||| Sbjct 57 CCAGGCTTGATCG 45 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1100914515040