Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001721.1
Length=387
Score E
Sequences producing significant alignments: (Bits) Value
seq3087396 389 9e-106
seq2996834 273 5e-71
seq2952911 253 4e-65
seq199714 253 4e-65
seq2795535 150 4e-34
seq964524 145 2e-32
seq1641046 105 1e-20
seq1193000 105 1e-20
>seq3087396
Length=5087
Score = 389 bits (430), Expect = 9e-106
Identities = 316/387 (82%), Gaps = 10/387 (3%)
Strand=Plus/Plus
Query 1 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGG 60
|||||||||||||||||||||||||||||||||| ||||||| || || ||||| | ||
Sbjct 1903 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGCTGTCCACCGCCGAGGCCAATATCGG 1962
Query 61 TTCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCA 120
||| |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 1963 TTCGATCTTCGGCATCGGCTTTGCGGCGTGGAGTGGCGGCGCGCTGCAGTTTATCAACCA 2022
Query 121 GTACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCG 180
|||||| |||||||| || |||||||| || ||||| ||||| |||||||| || |||||
Sbjct 2023 GTACGGCCTGAACGATTTTATCGCCCGGGCGCGCTATCTGGCCGAGCAGTACGGAGAGCG 2082
Query 181 CTTCTCGCCGCNNNNNNNNNNNNTGGAGAAAGCCGCGCAGGGTGAAGTGTTCCGGTAATC 240
||| |||| | | |||||||| || || || | | || | | |||
Sbjct 2083 TTTCGCGCCACCGGCGTTGTTGCTCGAGAAAGCGGCACAAGGCGCAACCTTTTGCTGATC 2142
Query 241 AAAATGTAGGAGGGGAGAGCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTG 300
|| |||| |||||||||| | || |||||||||| ||||||||||||
Sbjct 2143 AA-------CCGGGG---GCTTGCTTTGCATGTACCTTTCAAGGCACGCTCTGGGGTGTT 2192
Query 301 CAATATTCCCATCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAA 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2193 CAATATTCCCATCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAA 2252
Query 361 CCGATATTCTGCGCCCCGCTTTGATCG 387
||||||| ||||| || | | ||||||
Sbjct 2253 CCGATATCCTGCGTCCGGGTCTGATCG 2279
>seq2996834
Length=644
Score = 273 bits (302), Expect = 5e-71
Identities = 193/225 (86%), Gaps = 0/225 (0%)
Strand=Plus/Plus
Query 1 CGAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGG 60
|||||||||||| |||||||||||||||||||||| ||| ||||| || |||||||| ||
Sbjct 149 CGAAACCGTGCGTTGTGTGGAGGAGGGCGTGTTGAGGTCGACGGCTGACGCCAACGTCGG 208
Query 61 TTCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCA 120
|||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 209 CTCAATCTTCGGCATAGGCTTTGCCGCGTGGAGTGGCGGCGCGCTGCAGTTTATCAACCA 268
Query 121 GTACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCG 180
|||||| ||||||||||| |||||||| || ||||| ||||| |||||||| ||||||||
Sbjct 269 GTACGGCCTGAACGACTTTATCGCCCGGGCGCGCTATCTGGCCGAGCAGTACGGGGAGCG 328
Query 181 CTTCTCGCCGCNNNNNNNNNNNNTGGAGAAAGCCGCGCAGGGTGA 225
||||||||| | |||| ||||| |||||||| ||
Sbjct 329 CTTCTCGCCCCCGGCTCTGCTGCTGGAAAAAGCAGCGCAGGGAGA 373
Score = 172 bits (190), Expect = 1e-40
Identities = 112/122 (92%), Gaps = 1/122 (1%)
Strand=Plus/Plus
Query 252 GGGGAGAGCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCA 311
|| |||| ||||||||| ||| || |||||||||||||||||||||||||| ||||||||
Sbjct 522 GGCGAGA-CTTGCTTTGCAGGGGTGTTTCAAGGCAGGCTCTGGGGTGTGCATTATTCCCA 580
Query 312 TCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTG 371
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||
Sbjct 581 CCACCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAAACCGATATCCTG 640
Query 372 CG 373
||
Sbjct 641 CG 642
>seq2952911
Length=454
Score = 253 bits (280), Expect = 4e-65
Identities = 170/190 (89%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 2 GAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGGT 61
||||||||||| || |||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 424 GAAACCGTGCGGTGCGTGGAGGAGGGCGTGTTGCTGTCCACGGCGGATGCCAACGTCGGG 365
Query 62 TCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCAG 121
|| ||||||||||| || |||||||||||||||||||| |||||||||||||||||||||
Sbjct 364 TCGATCTTCGGCATAGGTTTTGCCGCGTGGAGTGGCGGTGCGTTGCAGTTTATCAACCAG 305
Query 122 TACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCGC 181
|| || |||||||||| || ||||| || ||||||||||| ||||| || ||||||||
Sbjct 304 TATGGCTTGAACGACTTTATTGCCCGGGCGCGCTACCTGGCCGAGCAATACGGGGAGCGG 245
Query 182 TTCTCGCCGC 191
||||||||||
Sbjct 244 TTCTCGCCGC 235
>seq199714
Length=3854
Score = 253 bits (280), Expect = 4e-65
Identities = 170/190 (89%), Gaps = 0/190 (0%)
Strand=Plus/Minus
Query 2 GAAACCGTGCGCTGTGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTTGGT 61
||||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1576 GAAACCGTGCGGTGCGTGGAGGAGGGCGTGTTGATGTCCACGGCGGATGCCAACGTCGGC 1517
Query 62 TCAATCTTCGGCATCGGCTTTGCCGCGTGGAGTGGCGGCGCGTTGCAGTTTATCAACCAG 121
|| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1516 TCGATCTTCGGCATTGGCTTTGCCGCGTGGAGTGGCGGCGCGCTGCAGTTTATCAACCAG 1457
Query 122 TACGGGCTGAACGACTTCATCGCCCGCGCCCGCTACCTGGCAGAGCAGTATGGGGAGCGC 181
|| || |||||||||||||| ||| | || ||||| |||| ||||| ||||| || ||
Sbjct 1456 TATGGCCTGAACGACTTCATTGCCAGGGCACGCTATTTGGCGGAGCAATATGGCGAACGG 1397
Query 182 TTCTCGCCGC 191
||||||||||
Sbjct 1396 TTCTCGCCGC 1387
Score = 163 bits (180), Expect = 6e-38
Identities = 113/128 (88%), Gaps = 0/128 (0%)
Strand=Plus/Minus
Query 260 CTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCATCGCCGTG 319
||||||||| || || ||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 1207 CTTGCTTTGCTGGGGTGTTTCAAGGCAGGCTCTGGGCTGTGCATTATTCCCATCACCGTG 1148
Query 320 TCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTGCGCCCCGC 379
||||| || ||||||||||||||||||||| ||||||||||||||||| ||||| || |
Sbjct 1147 TCAGGGATGTTTTATGTCGCTACGCGTCTGTATCCTGGAAACCGATATCCTGCGTCCAGG 1088
Query 380 TTTGATCG 387
|||||||
Sbjct 1087 CTTGATCG 1080
>seq2795535
Length=232
Score = 150 bits (166), Expect = 4e-34
Identities = 99/108 (92%), Gaps = 1/108 (1%)
Strand=Plus/Plus
Query 252 GGGGAGAGCTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCA 311
|| |||| ||||||||| ||| || |||| ||||||||||||||||||||| ||||||||
Sbjct 126 GGCGAGA-CTTGCTTTGCAGGGGTGTTTCGAGGCAGGCTCTGGGGTGTGCATTATTCCCA 184
Query 312 TCGCCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAA 359
|| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 185 TCACCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAA 232
>seq964524
Length=113
Score = 145 bits (160), Expect = 2e-32
Identities = 92/100 (92%), Gaps = 0/100 (0%)
Strand=Plus/Plus
Query 260 CTTGCTTTGAAGGTGTATTTCAAGGCAGGCTCTGGGGTGTGCAATATTCCCATCGCCGTG 319
||||||||| || || ||||||||||||||||||| |||||| |||||||||| |||||
Sbjct 14 CTTGCTTTGCTGGGGTGTTTCAAGGCAGGCTCTGGGCTGTGCATTATTCCCATCACCGTG 73
Query 320 TCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAA 359
|||||||||||||||||||||||||||||| |||||||||
Sbjct 74 TCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAA 113
>seq1641046
Length=127
Score = 105 bits (116), Expect = 1e-20
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 315 CCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTGCGC 374
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 126 CCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAAACCGATATCCTGCGT 67
Query 375 CCCGCTTTGATCG 387
|| | |||||||
Sbjct 66 CCGGGCTTGATCG 54
>seq1193000
Length=118
Score = 105 bits (116), Expect = 1e-20
Identities = 67/73 (92%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 315 CCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGCATCCTGGAAACCGATATTCTGCGC 374
||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 117 CCGTGTCAGGTATTTTTTATGTCGCTACGCGTCTGTATCCTGGAAACCGATATCCTGCGT 58
Query 375 CCCGCTTTGATCG 387
|| | |||||||
Sbjct 57 CCAGGCTTGATCG 45
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1100914515040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |