Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001745.1 Length=273 Score E Sequences producing significant alignments: (Bits) Value seq3084502 291 1e-76 seq218622 279 8e-73 seq2969958 251 1e-64 seq3020018 239 7e-61 seq179146 185 1e-44 seq813922 143 4e-32 seq2823883 123 4e-26 seq2941748 78.8 1e-12 >seq3084502 Length=2983 Score = 291 bits (322), Expect = 1e-76 Identities = 227/271 (84%), Gaps = 0/271 (0%) Strand=Plus/Plus Query 3 GGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGATCC 62 ||||| |||| || | | || ||||| ||| || ||||| ||||||| | ||| |||| Sbjct 812 GGGGCTTCGGCGCCGAACCTGTCCCTGGCGCAGCAGCCGCCGTTGATCGCGTACATATCC 871 Query 63 AGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCGCG 122 || || || ||||| |||||||| || |||||||||||||| |||||||||||||||||| Sbjct 872 AGCCGGGTCCCGGCGTACACCACTGGCGCGCCCGGTTGCGCCGCATCCAGCGTGCGCGCG 931 Query 123 GTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCGCC 182 ||||| ||||| || || |||||| ||| || | | ||| || |||||||||||| | Sbjct 932 GTGGCGCAGCCTGTCAGCTGCAGCACCAGCACAACCCACAGCGCCTTATTCATCGCCACT 991 Query 183 CAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAAT 242 || ||| ||||| |||||||| ||||||||||||||||| ||||||| |||||||||||| Sbjct 992 CAAGTGATGCTCGCCCCAACGCGGCAGCATGTCCTGGGGGATGTTCAGCAGGTTGAGAAT 1051 Query 243 GCGCGCCACCACAAAGTCCACCAGGTCATCG 273 |||||||||||||||||||||||||||||| Sbjct 1052 ACGCGCCACCACAAAGTCCACCAGGTCATCG 1082 >seq218622 Length=1733 Score = 279 bits (308), Expect = 8e-73 Identities = 225/272 (83%), Gaps = 0/272 (0%) Strand=Plus/Plus Query 1 TCGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGAT 60 |||| || | || |||| |||| | ||| ||| || || || | |||| ||| || Sbjct 565 TCGGCGCTTCAGCGCCAAATCGGTCCTTGGCGCAACAGCCACCGTCAATCGCATACAAAT 624 Query 61 CCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCG 120 |||| ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||| | Sbjct 625 CCAGCCGCGTGCCGGCGTACACCACCGGCGCGCCAGGCTGCGCTGCGTCCAGCGTGCGTG 684 Query 121 CGGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCG 180 ||||||| ||||| || ||||||||||||| || | | ||| |||||||||||||| | Sbjct 685 CGGTGGCGCAGCCCGTCAGTTGCAGCGCCAGCAGCACTAACAGGGCTTTATTCATCGCTG 744 Query 181 CCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGA 240 | || |||||||| |||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 745 CTCAAATGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATGTTCAGCAGGTTGAGA 804 Query 241 ATGCGCGCCACCACAAAGTCCACCAGGTCATC 272 || |||||||||||||| |||||||||||||| Sbjct 805 ATCCGCGCCACCACAAAATCCACCAGGTCATC 836 >seq2969958 Length=515 Score = 251 bits (278), Expect = 1e-64 Identities = 193/229 (84%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 1 TCGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGAT 60 |||| ||| | || |||| || | | ||| ||| || ||||||||||||| ||| || Sbjct 286 TCGGAGCCTCAGCGCCAAATCGATCCTTGGCGCAACAGCCGCCATTGATCGCATACACAT 345 Query 61 CCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCG 120 |||| ||||||||||||||||||||||| || || ||||||||||||||||||||||||| Sbjct 346 CCAGCCGCGTGCCGGCATACACCACCGGCGCCCCAGGTTGCGCGGCATCCAGCGTGCGCG 405 Query 121 CGGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCG 180 | ||||| ||||| || ||||||||||||| || | || |||||| ||||||||||| | Sbjct 406 CCGTGGCGCAGCCCGTCAGTTGCAGCGCCAACACCATCAACAGTGCCTTATTCATCGCTG 465 Query 181 CCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCA 229 | || |||||||| |||||||| ||||||||||||||||||||||||| Sbjct 466 CTCAAATGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATGTTCA 514 >seq3020018 Length=804 Score = 239 bits (264), Expect = 7e-61 Identities = 197/240 (82%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 1 TCGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGAT 60 |||| || | || |||| |||| | ||| ||| || ||||| || |||| ||| || Sbjct 240 TCGGCGCTTCAGCGCCAAACCGGTCCTTGGCGCAACAGCCGCCGTTAATCGCATACAAAT 181 Query 61 CCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCG 120 |||| ||||||||||| ||||||||||| ||||| || ||||| || || |||||||||| Sbjct 180 CCAGCCGCGTGCCGGCGTACACCACCGGCGCGCCAGGCTGCGCAGCGTCGAGCGTGCGCG 121 Query 121 CGGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCG 180 ||||||| ||||| || ||||||||||||| || | |||||| || ||||||||||| | Sbjct 120 CGGTGGCGCAGCCCGTCAGTTGCAGCGCCAGCATCACCAGCAGCGCCTTATTCATCGCTG 61 Query 181 CCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGA 240 | || |||||||| |||||||| |||||||||||||||||||| |||| |||||||||| Sbjct 60 CTCAAATGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATATTCAGCAGGTTGAGA 1 >seq179146 Length=15019 Score = 185 bits (204), Expect = 1e-44 Identities = 227/328 (69%), Gaps = 55/328 (17%) Strand=Plus/Minus Query 1 TCGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGAT 60 |||| ||| | || |||| ||||| | ||| || || ||||| ||||||| ||| || Sbjct 11971 TCGGCGCCTCAGCGCCAAAGCGGTCCTTGGCACAACAGCCGCCGTTGATCGCATACAAAT 11912 Query 61 CCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCG 120 |||| ||||||||||||||||||||||| || || |||||||| |||||||||||||||| Sbjct 11911 CCAGCCGCGTGCCGGCATACACCACCGGCGCCCCAGGTTGCGCAGCATCCAGCGTGCGCG 11852 Query 121 CGGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATC---- 176 | ||||| ||||| || ||||||| ||||| || | |||||| || ||||||||| Sbjct 11851 CCGTGGCGCAGCCTGTCAGTTGCAACGCCAGCACCACCAGCAGCGCCTTATTCATCANNN 11792 Query 177 -----------------------------GCCGCCCAGGTGGTGCTCACCCCAACGTGGC 207 || || |||||||| |||||||| ||| Sbjct 11791 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCAAATGGTGCTCGCCCCAACGCGGC 11732 Query 208 AGCATGTCCTGGGGAAT----------------------GTTCAACAGGTTGAGAATGCG 245 ||||||||||||||||| ||||||||||||||| Sbjct 11731 AGCATGTCCTGGGGAATANNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTTGAGAATGCG 11672 Query 246 CGCCACCACAAAGTCCACCAGGTCATCG 273 |||||||||||||||||||||||||||| Sbjct 11671 CGCCACCACAAAGTCCACCAGGTCATCG 11644 >seq813922 Length=109 Score = 143 bits (158), Expect = 4e-32 Identities = 84/87 (97%), Gaps = 0/87 (0%) Strand=Plus/Plus Query 187 TGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAATGCGC 246 |||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||||| Sbjct 8 TGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATGTTCAGCAGGTTGAGAATGCGC 67 Query 247 GCCACCACAAAGTCCACCAGGTCATCG 273 ||||||||||||||||||||||||||| Sbjct 68 GCCACCACAAAGTCCACCAGGTCATCG 94 >seq2823883 Length=249 Score = 123 bits (136), Expect = 4e-26 Identities = 79/86 (92%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 187 TGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAATGCGC 246 |||||||| |||||||| |||||||||||||||||||| |||| |||||||||||| ||| Sbjct 8 TGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATATTCAGCAGGTTGAGAATCCGC 67 Query 247 GCCACCACAAAGTCCACCAGGTCATC 272 || |||||||| |||||||||||||| Sbjct 68 GCGACCACAAAATCCACCAGGTCATC 93 >seq2941748 Length=421 Score = 78.8 bits (86), Expect = 1e-12 Identities = 43/43 (100%), Gaps = 0/43 (0%) Strand=Plus/Minus Query 231 CAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATCG 273 ||||||||||||||||||||||||||||||||||||||||||| Sbjct 421 CAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATCG 379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751229990478