Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001745.1
Length=273
Score E
Sequences producing significant alignments: (Bits) Value
seq3084502 291 1e-76
seq218622 279 8e-73
seq2969958 251 1e-64
seq3020018 239 7e-61
seq179146 185 1e-44
seq813922 143 4e-32
seq2823883 123 4e-26
seq2941748 78.8 1e-12
>seq3084502
Length=2983
Score = 291 bits (322), Expect = 1e-76
Identities = 227/271 (84%), Gaps = 0/271 (0%)
Strand=Plus/Plus
Query 3 GGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGATCC 62
||||| |||| || | | || ||||| ||| || ||||| ||||||| | ||| ||||
Sbjct 812 GGGGCTTCGGCGCCGAACCTGTCCCTGGCGCAGCAGCCGCCGTTGATCGCGTACATATCC 871
Query 63 AGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCGCG 122
|| || || ||||| |||||||| || |||||||||||||| ||||||||||||||||||
Sbjct 872 AGCCGGGTCCCGGCGTACACCACTGGCGCGCCCGGTTGCGCCGCATCCAGCGTGCGCGCG 931
Query 123 GTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCGCC 182
||||| ||||| || || |||||| ||| || | | ||| || |||||||||||| |
Sbjct 932 GTGGCGCAGCCTGTCAGCTGCAGCACCAGCACAACCCACAGCGCCTTATTCATCGCCACT 991
Query 183 CAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAAT 242
|| ||| ||||| |||||||| ||||||||||||||||| ||||||| ||||||||||||
Sbjct 992 CAAGTGATGCTCGCCCCAACGCGGCAGCATGTCCTGGGGGATGTTCAGCAGGTTGAGAAT 1051
Query 243 GCGCGCCACCACAAAGTCCACCAGGTCATCG 273
||||||||||||||||||||||||||||||
Sbjct 1052 ACGCGCCACCACAAAGTCCACCAGGTCATCG 1082
>seq218622
Length=1733
Score = 279 bits (308), Expect = 8e-73
Identities = 225/272 (83%), Gaps = 0/272 (0%)
Strand=Plus/Plus
Query 1 TCGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGAT 60
|||| || | || |||| |||| | ||| ||| || || || | |||| ||| ||
Sbjct 565 TCGGCGCTTCAGCGCCAAATCGGTCCTTGGCGCAACAGCCACCGTCAATCGCATACAAAT 624
Query 61 CCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCG 120
|||| ||||||||||| ||||||||||| ||||| || ||||| || ||||||||||| |
Sbjct 625 CCAGCCGCGTGCCGGCGTACACCACCGGCGCGCCAGGCTGCGCTGCGTCCAGCGTGCGTG 684
Query 121 CGGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCG 180
||||||| ||||| || ||||||||||||| || | | ||| |||||||||||||| |
Sbjct 685 CGGTGGCGCAGCCCGTCAGTTGCAGCGCCAGCAGCACTAACAGGGCTTTATTCATCGCTG 744
Query 181 CCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGA 240
| || |||||||| |||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 745 CTCAAATGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATGTTCAGCAGGTTGAGA 804
Query 241 ATGCGCGCCACCACAAAGTCCACCAGGTCATC 272
|| |||||||||||||| ||||||||||||||
Sbjct 805 ATCCGCGCCACCACAAAATCCACCAGGTCATC 836
>seq2969958
Length=515
Score = 251 bits (278), Expect = 1e-64
Identities = 193/229 (84%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 1 TCGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGAT 60
|||| ||| | || |||| || | | ||| ||| || ||||||||||||| ||| ||
Sbjct 286 TCGGAGCCTCAGCGCCAAATCGATCCTTGGCGCAACAGCCGCCATTGATCGCATACACAT 345
Query 61 CCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCG 120
|||| ||||||||||||||||||||||| || || |||||||||||||||||||||||||
Sbjct 346 CCAGCCGCGTGCCGGCATACACCACCGGCGCCCCAGGTTGCGCGGCATCCAGCGTGCGCG 405
Query 121 CGGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCG 180
| ||||| ||||| || ||||||||||||| || | || |||||| ||||||||||| |
Sbjct 406 CCGTGGCGCAGCCCGTCAGTTGCAGCGCCAACACCATCAACAGTGCCTTATTCATCGCTG 465
Query 181 CCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCA 229
| || |||||||| |||||||| |||||||||||||||||||||||||
Sbjct 466 CTCAAATGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATGTTCA 514
>seq3020018
Length=804
Score = 239 bits (264), Expect = 7e-61
Identities = 197/240 (82%), Gaps = 0/240 (0%)
Strand=Plus/Minus
Query 1 TCGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGAT 60
|||| || | || |||| |||| | ||| ||| || ||||| || |||| ||| ||
Sbjct 240 TCGGCGCTTCAGCGCCAAACCGGTCCTTGGCGCAACAGCCGCCGTTAATCGCATACAAAT 181
Query 61 CCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCG 120
|||| ||||||||||| ||||||||||| ||||| || ||||| || || ||||||||||
Sbjct 180 CCAGCCGCGTGCCGGCGTACACCACCGGCGCGCCAGGCTGCGCAGCGTCGAGCGTGCGCG 121
Query 121 CGGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATCGCCG 180
||||||| ||||| || ||||||||||||| || | |||||| || ||||||||||| |
Sbjct 120 CGGTGGCGCAGCCCGTCAGTTGCAGCGCCAGCATCACCAGCAGCGCCTTATTCATCGCTG 61
Query 181 CCCAGGTGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGA 240
| || |||||||| |||||||| |||||||||||||||||||| |||| ||||||||||
Sbjct 60 CTCAAATGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATATTCAGCAGGTTGAGA 1
>seq179146
Length=15019
Score = 185 bits (204), Expect = 1e-44
Identities = 227/328 (69%), Gaps = 55/328 (17%)
Strand=Plus/Minus
Query 1 TCGGGGCCACGGCCCCAATGCGGTACCTGGGGCACCAACCGCCATTGATCGGGCACAGAT 60
|||| ||| | || |||| ||||| | ||| || || ||||| ||||||| ||| ||
Sbjct 11971 TCGGCGCCTCAGCGCCAAAGCGGTCCTTGGCACAACAGCCGCCGTTGATCGCATACAAAT 11912
Query 61 CCAGACGCGTGCCGGCATACACCACCGGGGCGCCCGGTTGCGCGGCATCCAGCGTGCGCG 120
|||| ||||||||||||||||||||||| || || |||||||| ||||||||||||||||
Sbjct 11911 CCAGCCGCGTGCCGGCATACACCACCGGCGCCCCAGGTTGCGCAGCATCCAGCGTGCGCG 11852
Query 121 CGGTGGCACAGCCGGTGAGTTGCAGCGCCATCAAGAGCAGCAGTGCTTTATTCATC---- 176
| ||||| ||||| || ||||||| ||||| || | |||||| || |||||||||
Sbjct 11851 CCGTGGCGCAGCCTGTCAGTTGCAACGCCAGCACCACCAGCAGCGCCTTATTCATCANNN 11792
Query 177 -----------------------------GCCGCCCAGGTGGTGCTCACCCCAACGTGGC 207
|| || |||||||| |||||||| |||
Sbjct 11791 NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCTCAAATGGTGCTCGCCCCAACGCGGC 11732
Query 208 AGCATGTCCTGGGGAAT----------------------GTTCAACAGGTTGAGAATGCG 245
||||||||||||||||| |||||||||||||||
Sbjct 11731 AGCATGTCCTGGGGAATANNNNNNNNNNNNNNNNNNNNNNNNNNNCAGGTTGAGAATGCG 11672
Query 246 CGCCACCACAAAGTCCACCAGGTCATCG 273
||||||||||||||||||||||||||||
Sbjct 11671 CGCCACCACAAAGTCCACCAGGTCATCG 11644
>seq813922
Length=109
Score = 143 bits (158), Expect = 4e-32
Identities = 84/87 (97%), Gaps = 0/87 (0%)
Strand=Plus/Plus
Query 187 TGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAATGCGC 246
|||||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||
Sbjct 8 TGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATGTTCAGCAGGTTGAGAATGCGC 67
Query 247 GCCACCACAAAGTCCACCAGGTCATCG 273
|||||||||||||||||||||||||||
Sbjct 68 GCCACCACAAAGTCCACCAGGTCATCG 94
>seq2823883
Length=249
Score = 123 bits (136), Expect = 4e-26
Identities = 79/86 (92%), Gaps = 0/86 (0%)
Strand=Plus/Plus
Query 187 TGGTGCTCACCCCAACGTGGCAGCATGTCCTGGGGAATGTTCAACAGGTTGAGAATGCGC 246
|||||||| |||||||| |||||||||||||||||||| |||| |||||||||||| |||
Sbjct 8 TGGTGCTCGCCCCAACGCGGCAGCATGTCCTGGGGAATATTCAGCAGGTTGAGAATCCGC 67
Query 247 GCCACCACAAAGTCCACCAGGTCATC 272
|| |||||||| ||||||||||||||
Sbjct 68 GCGACCACAAAATCCACCAGGTCATC 93
>seq2941748
Length=421
Score = 78.8 bits (86), Expect = 1e-12
Identities = 43/43 (100%), Gaps = 0/43 (0%)
Strand=Plus/Minus
Query 231 CAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATCG 273
|||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 CAGGTTGAGAATGCGCGCCACCACAAAGTCCACCAGGTCATCG 379
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751229990478
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |