Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq222150 275 1e-71 seq10722 219 1e-54 seq210950 203 7e-50 seq2282263 107 4e-21 seq1839325 104 5e-20 seq1839324 104 5e-20 seq1933122 102 2e-19 seq1705714 96.9 8e-18 seq966473 91.5 3e-16 seq1917324 89.7 1e-15 >seq222150 Length=2306 Score = 275 bits (304), Expect = 1e-71 Identities = 310/407 (76%), Gaps = 11/407 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 || |||||||||||||||||| |||||| || |||| |||| | || ||| | | | | Sbjct 896 CGCCTACGCCTGTCGGCCTCGGCTTAGGTCCTGACTAACCCTGAGCGGACGAGCCTTCCT 955 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCTG 120 | |||| |||| | | |||| ||||||||||| |||||||| |||||||||| || | Sbjct 956 CAGGAAACCTTAGGCATTCGGTGGACGGGATTCTCACCCGTCTTTCGCTACTCATACCGG 1015 Query 121 CATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTC-AC-CACTGACACG 178 |||||||||| | |||||| | | |||| |||||| || | || | | Sbjct 1016 CATTCTCACTTCTAAGCGCTCCACTAGTCC-TCACGGTCTAGCTTCGACGCCCTTAGA-- 1072 Query 179 ACGCTCCCCTACCCAACCACAC--AGGTTG---CCACAGCTTCGGCGGATAACTTAAGCC 233 |||||| |||||| | || | ||||| |||||||||||| | | | ||| ||| Sbjct 1073 ACGCTCTCCTACCATAGAACCCTAAGGTTCTATCCACAGCTTCGGTGTACTATTTA-GCC 1131 Query 234 CCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGA 293 ||| || ||| ||||||| | ||||| ||| |||||||||||||||||||||| || || Sbjct 1132 CCGGTAAATTTTCGGCGCAGGGTCACTCGACTAGTGAGCTATTACGCACTCTTTAAATGA 1191 Query 294 TGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG 353 |||||||||| ||||||| |||| |||||||| ||||| ||||||||||| ||||| | Sbjct 1192 TGGCTGCTTCTGAGCCAACATCCTAGTTGTCTAAGCAACCCCACATCCTTTTCCACTTAA 1251 Query 354 TCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | |||| ||| ||||||||| || |||||||||||||||| ||| Sbjct 1252 TAGTAACTTTGGGACCTTAGCTGGTGGTCTGGGCTGTTTCCCTTTCG 1298 >seq10722 Length=3686 Score = 219 bits (242), Expect = 1e-54 Identities = 297/406 (73%), Gaps = 11/406 (3%) Strand=Plus/Plus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| |||||||||||||||| |||||||||| | | || ||| | Sbjct 1791 CGACTACGCCTTTCGGCCTCGCCTTAGGGGTCGACTCACCCTGCCCCGATTAACGTTGGA 1850 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 | ||||||||||| ||||| |||| || |||||| | || |||| ||| | Sbjct 1851 CAGGAACCCTTGGTCTTCCGGCGAGCGGGCTTTTCACCCGCTTTATCGTTACTTATGTCA 1910 Query 120 GCATTCTCACT-CGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCA-CTGACAC 177 |||||| |||| | || | ||||| || || |||| || ||||| | || ||| Sbjct 1911 GCATTCGCACTTCTGAT-ACCTCCAGCAGACC-TCACAGTCCACCTTCAACGGCTTACAG 1968 Query 178 GACGCTCCCCTACCCAACCACACAGGT-----TGCCACAGCTTCGGCGGATAACTTAAGC 232 ||||||||||||||||| | | | |||| ||||||||| | || ||| || Sbjct 1969 AACGCTCCCCTACCCAACAGTATCGCTACTGCTGCCGCAGCTTCGGTGCATGGTTTA-GC 2027 Query 233 CCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAAGG 292 |||| ||||| || |||| | ||| ||||||||||||||||||| ||||| || | Sbjct 2028 CCCGTTACATCTTCCGCGCAGGCCGACTCGACCAGTGAGCTATTACGCTTTCTTTAAATG 2087 Query 293 ATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGA 352 ||||||||||| |||||||| |||||| ||||| || ||||||| ||||||||| | Sbjct 2088 ATGGCTGCTTCTAAGCCAACATCCTGGCTGTCTGTGCCTTCCCACATCGTTTCCCACTTA 2147 Query 353 GTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCT 398 || |||| ||| ||||||||| | |||||| ||||||||||| Sbjct 2148 ACCATGACTTTGGGACCTTAGCTGGCGGTCTGGGTTGTTTCCCTCT 2193 >seq210950 Length=3273 Score = 203 bits (224), Expect = 7e-50 Identities = 159/189 (84%), Gaps = 1/189 (1%) Strand=Plus/Minus Query 210 CAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTG 269 ||||||||| || | ||| |||||| |||||| ||||||| || ||||| ||| |||| Sbjct 3239 CAGCTTCGGTGGTGTATTTA-GCCCCGGTACATTTTCGGCGCAGAGTCACTCGACTAGTG 3181 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 |||||||||||||||||| || | |||||||||| ||||||| |||| |||||||| || Sbjct 3180 AGCTATTACGCACTCTTTAAATGGTGGCTGCTTCTGAGCCAACATCCTAGTTGTCTAAGC 3121 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 ||||||||||||||| ||||| | | ||||| ||| ||||||||| ||||||||||| Sbjct 3120 AACTCCACATCCTTTTCCACTTAATACACACTTTGGGACCTTAGCTGGCGATCTGGGCTG 3061 Query 390 TTTCCCTCT 398 ||||||||| Sbjct 3060 TTTCCCTCT 3052 >seq2282263 Length=135 Score = 107 bits (118), Expect = 4e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 258 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT 317 ||| ||| ||||||||||||||| ||||| |||| |||||||||| |||||| |||||| Sbjct 19 ACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTGCTTCTAAGCCACCCTCCT 78 Query 318 GGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGC 374 | |||||| || ||||||| ||||||||| | || |||| ||| ||||||| Sbjct 79 AGCTGTCTAAGCCTTCCCACATCGTTTCCCACTTAACCATAACTTTGGGACCTTAGC 135 >seq1839325 Length=127 Score = 104 bits (114), Expect = 5e-20 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| || Sbjct 127 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAA 68 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || ||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| Sbjct 67 GGGCGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACT 8 >seq1839324 Length=127 Score = 104 bits (114), Expect = 5e-20 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| || Sbjct 127 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAA 68 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 || ||||||||| ||||||||||||| | |||||| || ||||||| ||||||||| Sbjct 67 GGGGGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACT 8 >seq1933122 Length=127 Score = 102 bits (112), Expect = 2e-19 Identities = 91/114 (80%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 283 TCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCT 342 ||||| |||| ||||||||| ||||||||||||| | |||||| || ||||||| | Sbjct 125 TCTTTAAAGGGAGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGT 66 Query 343 TTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 | |||||| | || |||| ||| |||||||||| | |||||| ||||||||| Sbjct 65 TCCCCACTTAACCATAACTTTGGGACCTTAGCTGACGGTCTGGGTTGTTTCCCT 12 >seq1705714 Length=127 Score = 96.9 bits (106), Expect = 8e-18 Identities = 77/93 (83%), Gaps = 0/93 (0%) Strand=Plus/Plus Query 258 ACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCT 317 ||| ||| ||||||||||||||| ||||| |||| ||||| |||| ||||||||||||| Sbjct 23 ACTCGACTAGTGAGCTATTACGCTTTCTTTAAAGGGTGGCTTCTTCTAAGCCAACCTCCT 82 Query 318 GGTTGTCTACGCAACTCCACATCCTTTCCCACT 350 | |||||| || ||||||| ||||||||| Sbjct 83 AGCTGTCTAAGCCTTCCCACATCGTTTCCCACT 115 >seq966473 Length=113 Score = 91.5 bits (100), Expect = 3e-16 Identities = 88/113 (78%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| ||||| || |||| | ||| ||| ||||||||||||||| ||||| || Sbjct 113 GCCCCGTTACATCTTCCGCGCAGGCCGACTCGACTAGTGAGCTATTACGCTTTCTTTAAA 54 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTT 343 || ||||||||| ||||||||||||| | |||||| || ||||||| || Sbjct 53 GGGAGGCTGCTTCTAAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTT 1 >seq1917324 Length=127 Score = 89.7 bits (98), Expect = 1e-15 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 305 AAGCCAACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAG 364 ||||||||||||| | |||||| || ||||||| ||||||||| | || |||| | Sbjct 126 AAGCCAACCTCCTAGCTGTCTAAGCCTTCCCACATCGTTTCCCACTTAACCATAACTTTG 67 Query 365 GGGCCTTAGCTGATGATCTGGGCTGTTTCCCT 396 ||||||||||||| | |||||| ||||||||| Sbjct 66 GGGCCTTAGCTGACGGTCTGGGTTGTTTCCCT 35 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1141229694464