Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001757.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq2986336 452 9e-125 seq253618 389 9e-106 seq2967108 331 2e-88 seq3065656 242 9e-62 seq2979746 203 8e-50 seq2895908 179 9e-43 seq3055437 176 1e-41 seq2283464 154 4e-35 seq2285441 150 4e-34 seq2311960 140 8e-31 seq2870869 123 6e-26 seq2963598 118 3e-24 >seq2986336 Length=588 Score = 452 bits (500), Expect = 9e-125 Identities = 334/397 (84%), Gaps = 0/397 (0%) Strand=Plus/Minus Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60 ||||||| |||||||||||||||||||||||||| |||||||||| |||||||||||||| Sbjct 397 CGACGTTGGGGCTCTGGAAGCCGACGTCATAGATATGGAAGCCCAGGTGCATGATCTTCT 338 Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120 |||||||||||||||| |||||||| |||||||| ||||||||||||||||| ||||| Sbjct 337 GGTCCAGGTGCAGGTACGGGTAGTTGCCGTCCACCGGCAGCGACGGCGCCAGTTTCACCA 278 Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180 ||||||||||||||| ||||||||||||||||| ||||||| Sbjct 277 CACCCACCAGCATCAGCGGCGCCACTTCACCGGCGGCGCGGGCCACGGCGAGAATCATGC 218 Query 181 CGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGG 240 ||||| |||| |||||||| ||||| |||| ||||||||||||||||| || ||||||| Sbjct 217 CGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCACAGCGTTTCTGCCTTGG 158 Query 241 TCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTT 300 ||||||||| |||| ||| |||||||||||||| || ||||| ||||||| ||||||| Sbjct 157 TCGCGCCCAGTGCCAACGACCCCTCGCGCACGGTGCGGGGAATCCGCGCCAGGCCTTCTT 98 Query 301 CGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCA 360 |||||||||||||||| ||||| || |||||||| ||||| |||| ||| ||||||| || Sbjct 97 CGGTGGCCACGATCACTACCGGCACCGCCAGCAGCGCCAGCGTCAGCGAGGCCCACAACA 38 Query 361 GGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTC 397 || |||| ||||| || || || |||||||| || || Sbjct 37 GGCCCGGCGTACCGAACGTGGGTGCCGGCAGAGCCTC 1 >seq253618 Length=1396 Score = 389 bits (430), Expect = 9e-106 Identities = 305/372 (82%), Gaps = 0/372 (0%) Strand=Plus/Plus Query 44 CAAGTGCATGATCTTCTGGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGA 103 || |||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||| Sbjct 1 CAGGTGCATGATCTTCTGGTCCAGGTGCAAGTACGGGTAGTTGCCGTCCAGCGGCAGCGA 60 Query 104 CGGCGCCAGCTTCACNNNNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGC 163 ||| |||||||| || ||||||||| ||||| || ||||| Sbjct 61 CGGTGCCAGCTTGACCACACCGACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGC 120 Query 164 CACGGCGAGGATCATGCCGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCA 223 |||||||||||||||||||||| |||| |||||||| ||||| |||| ||||||||||| Sbjct 121 CACGGCGAGGATCATGCCGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCA 180 Query 224 CAGCGTCTCGGCCTTGGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAAT 283 |||||| || |||||||||||||||| ||||| || || || |||||||| || ||||| Sbjct 181 CAGCGTTTCCGCCTTGGTCGCGCCCAGCGCCAGGGAACCTTCACGCACGGTGCGAGGAAT 240 Query 284 ACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGT 343 ||||||| |||||||||||||||||||| |||||||| || |||||||| |||||||| Sbjct 241 CCGCGCCAGGCCTTCTTCGGTGGCCACGATTACCACCGGCACGGCCAGCAGCGCCAGGGT 300 Query 344 CAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTCGGGGAA 403 || ||| ||||||| || | |||| ||||| |||||||| |||||||| ||||||| ||| Sbjct 301 CAGCGAGGCCCACAACAAGCCCGGTGTACCGAAGGTCGGTGCCGGCAGGGCTTCGGCGAA 360 Query 404 GACCAAGCGGTC 415 || || |||||| Sbjct 361 GAACAGGCGGTC 372 >seq2967108 Length=504 Score = 331 bits (366), Expect = 2e-88 Identities = 237/273 (87%), Gaps = 0/273 (0%) Strand=Plus/Minus Query 143 CACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGCCGGTCGTCATGGCCGGGCTTGC 202 |||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| || Sbjct 504 CACTTCACCGGCGGCGCGGGCCACGGCGAGGATCATGCCGGTCATCATCGCCGGGCTGGC 445 Query 203 CATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGGTCGCGCCCAAGGCCAGCGAGCC 262 ||| |||| ||||||||||||||||| || |||||||||||||||| |||| ||||| Sbjct 444 CATTGGCAGCACGATCTTCCACAGCGTTTCCGCCTTGGTCGCGCCCAGTGCCAAGGAGCC 385 Query 263 CTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGG 322 |||||||||||| || ||||| ||||||| ||||||||||||||||| ||||||||||| Sbjct 384 CTCGCGCACGGTGCGAGGAATCCGCGCCAGGCCTTCTTCGGTGGCCACAATCACCACCGG 325 Query 323 AACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGG 382 || |||||||| |||||||||| ||| |||||||||||| | || ||||| || || || Sbjct 324 CACCGCCAGCAGCGCCAGGGTCAGCGAGGCCCACAGCAGGCCTGGCGTACCGAACGTGGG 265 Query 383 CGCCGGCAGTGCTTCGGGGAAGACCAAGCGGTC 415 |||||||| ||||||| ||||| || ||||| Sbjct 264 TGCCGGCAGGGCTTCGGCGAAGAACAGACGGTC 232 >seq3065656 Length=1471 Score = 242 bits (268), Expect = 9e-62 Identities = 182/221 (82%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60 ||||||| |||||||||||||||||||||||||| ||||| |||| |||||||||||||| Sbjct 1251 CGACGTTGGGGCTCTGGAAGCCGACGTCATAGATATGGAAACCCAGGTGCATGATCTTCT 1310 Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120 |||| ||||||||||| |||||||| ||||||| ||||||||||| ||||||||||| Sbjct 1311 GGTCAAGGTGCAGGTACGGGTAGTTACCGTCCAACGGCAGCGACGGGGCCAGCTTCACCA 1370 Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180 ||||||||||||||| || |||||||||||||||||||||| Sbjct 1371 CGCCGACCAGCATCAGCGGCGCCACTTCACCGGCGGCCCGGGCCACGGCGAGGATCATGC 1430 Query 181 CGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTC 221 ||||| |||| |||||||| ||||| |||| ||||||||| Sbjct 1431 CGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTC 1471 >seq2979746 Length=557 Score = 203 bits (224), Expect = 8e-50 Identities = 150/182 (82%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60 ||||||| ||||||||||||||||||||||| || |||||||||| ||||||||| |||| Sbjct 182 CGACGTTGGGGCTCTGGAAGCCGACGTCATAAATATGGAAGCCCAGGTGCATGATTTTCT 123 Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120 |||||||||||||||| |||||||| ||||||| ||||||||||||||||| ||||| Sbjct 122 GGTCCAGGTGCAGGTACGGGTAGTTGCCGTCCAGCGGCAGCGACGGCGCCAGTTTCACTA 63 Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180 ||||||||||||||| ||||||||||||||||||||||||| Sbjct 62 CACCCACCAGCATCAGCGGCGCCACTTCACCGGCGGCGCGGGCCACGGCGAGGATCATGC 3 Query 181 CG 182 || Sbjct 2 CG 1 >seq2895908 Length=325 Score = 179 bits (198), Expect = 9e-43 Identities = 131/152 (86%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 264 TCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGGA 323 || |||||||| || ||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 324 TCACGCACGGTGCGAGGAATCCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGC 265 Query 324 ACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGGC 383 || |||||||| |||||||||| ||| ||||||| |||| |||| ||||| || ||||| Sbjct 264 ACGGCCAGCAGCGCCAGGGTCAGCGAGGCCCACAACAGGCCCGGCGTACCGAACGTCGGT 205 Query 384 GCCGGCAGTGCTTCGGGGAAGACCAAGCGGTC 415 |||||||| ||||||| ||||| || |||||| Sbjct 204 GCCGGCAGGGCTTCGGCGAAGAACAGGCGGTC 173 >seq3055437 Length=1240 Score = 176 bits (194), Expect = 1e-41 Identities = 130/152 (86%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 264 TCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGGA 323 || |||||||| || ||||| ||||||| ||||||||||||||||||||||||||||| Sbjct 1239 TCACGCACGGTGCGAGGAATCCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGC 1180 Query 324 ACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGGC 383 || |||||||| |||||||||| ||| ||||| ||||| |||| || || ||||||||| Sbjct 1179 ACCGCCAGCAGCGCCAGGGTCAGCGAGGCCCAGAGCAGCCCCGGCGTGCCGAAGGTCGGC 1120 Query 384 GCCGGCAGTGCTTCGGGGAAGACCAAGCGGTC 415 |||||||| ||||||| ||||| || ||||| Sbjct 1119 GCCGGCAGGGCTTCGGCGAAGAACAGCCGGTC 1088 >seq2283464 Length=135 Score = 154 bits (170), Expect = 4e-35 Identities = 115/135 (85%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 179 GCCGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTT 238 ||||||| |||| |||||||| ||||| |||| ||||||||||||||||| || ||||| Sbjct 1 GCCGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCACAGCGTTTCCGCCTT 60 Query 239 GGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTC 298 ||||||||| | ||||| || || || |||||||| || ||||| ||||||| ||||| Sbjct 61 GGTCGCGCCGAGCGCCAGGGAACCTTCACGCACGGTGCGAGGAATCCGCGCCAGGCCTTC 120 Query 299 TTCGGTGGCCACGAT 313 ||||||||||||||| Sbjct 121 TTCGGTGGCCACGAT 135 >seq2285441 Length=136 Score = 150 bits (166), Expect = 4e-34 Identities = 115/136 (85%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 179 GCCGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTT 238 ||||||| |||| |||||||| ||||| |||| ||||||||||||||||| || ||||| Sbjct 136 GCCGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCACAGCGTTTCCGCCTT 77 Query 239 GGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTC 298 ||| ||||| | ||||| || || || |||||||| || ||||| ||||||| ||||| Sbjct 76 GGTTGCGCCGAGTGCCAGGGAACCTTCACGCACGGTGCGAGGAATCCGCGCCAGGCCTTC 17 Query 299 TTCGGTGGCCACGATC 314 |||||||||||||||| Sbjct 16 TTCGGTGGCCACGATC 1 >seq2311960 Length=139 Score = 140 bits (154), Expect = 8e-31 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 44 CAAGTGCATGATCTTCTGGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGA 103 || |||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||| Sbjct 1 CAGGTGCATGATCTTCTGGTCCAGGTGCAAGTACGGGTAGTTGCCGTCCAGCGGCAGCGA 60 Query 104 CGGCGCCAGCTTCACNNNNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGC 163 |||||||||||| || ||||||||||||||| |||||||| Sbjct 61 CGGCGCCAGCTTGACCACACCCACCAGCATCAGCGGCGCCACTTCACCGGCGGCGCGGGC 120 Query 164 CACGGCGAGGATCATGCCG 182 ||||||||||||||||||| Sbjct 121 CACGGCGAGGATCATGCCG 139 >seq2870869 Length=291 Score = 123 bits (136), Expect = 6e-26 Identities = 77/83 (93%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60 ||||||| ||||||||||||||||||||||| || |||||||||| |||||||||||||| Sbjct 83 CGACGTTGGGGCTCTGGAAGCCGACGTCATAAATATGGAAGCCCAGGTGCATGATCTTCT 24 Query 61 GGTCCAGGTGCAGGTAGGGGTAG 83 |||||||||||| ||| |||||| Sbjct 23 GGTCCAGGTGCAAGTACGGGTAG 1 >seq2963598 Length=491 Score = 118 bits (130), Expect = 3e-24 Identities = 76/83 (92%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60 ||||||| ||||||||||| ||||||||||| || |||||||||| |||||||||||||| Sbjct 83 CGACGTTGGGGCTCTGGAAACCGACGTCATAAATATGGAAGCCCAGGTGCATGATCTTCT 24 Query 61 GGTCCAGGTGCAGGTAGGGGTAG 83 |||||||||||| ||| |||||| Sbjct 23 GGTCCAGGTGCAAGTACGGGTAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203253047424