Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001757.1
Length=420
Score E
Sequences producing significant alignments: (Bits) Value
seq2986336 452 9e-125
seq253618 389 9e-106
seq2967108 331 2e-88
seq3065656 242 9e-62
seq2979746 203 8e-50
seq2895908 179 9e-43
seq3055437 176 1e-41
seq2283464 154 4e-35
seq2285441 150 4e-34
seq2311960 140 8e-31
seq2870869 123 6e-26
seq2963598 118 3e-24
>seq2986336
Length=588
Score = 452 bits (500), Expect = 9e-125
Identities = 334/397 (84%), Gaps = 0/397 (0%)
Strand=Plus/Minus
Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60
||||||| |||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct 397 CGACGTTGGGGCTCTGGAAGCCGACGTCATAGATATGGAAGCCCAGGTGCATGATCTTCT 338
Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120
|||||||||||||||| |||||||| |||||||| ||||||||||||||||| |||||
Sbjct 337 GGTCCAGGTGCAGGTACGGGTAGTTGCCGTCCACCGGCAGCGACGGCGCCAGTTTCACCA 278
Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180
||||||||||||||| ||||||||||||||||| |||||||
Sbjct 277 CACCCACCAGCATCAGCGGCGCCACTTCACCGGCGGCGCGGGCCACGGCGAGAATCATGC 218
Query 181 CGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGG 240
||||| |||| |||||||| ||||| |||| ||||||||||||||||| || |||||||
Sbjct 217 CGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCACAGCGTTTCTGCCTTGG 158
Query 241 TCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTT 300
||||||||| |||| ||| |||||||||||||| || ||||| ||||||| |||||||
Sbjct 157 TCGCGCCCAGTGCCAACGACCCCTCGCGCACGGTGCGGGGAATCCGCGCCAGGCCTTCTT 98
Query 301 CGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCA 360
|||||||||||||||| ||||| || |||||||| ||||| |||| ||| ||||||| ||
Sbjct 97 CGGTGGCCACGATCACTACCGGCACCGCCAGCAGCGCCAGCGTCAGCGAGGCCCACAACA 38
Query 361 GGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTC 397
|| |||| ||||| || || || |||||||| || ||
Sbjct 37 GGCCCGGCGTACCGAACGTGGGTGCCGGCAGAGCCTC 1
>seq253618
Length=1396
Score = 389 bits (430), Expect = 9e-106
Identities = 305/372 (82%), Gaps = 0/372 (0%)
Strand=Plus/Plus
Query 44 CAAGTGCATGATCTTCTGGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGA 103
|| |||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||
Sbjct 1 CAGGTGCATGATCTTCTGGTCCAGGTGCAAGTACGGGTAGTTGCCGTCCAGCGGCAGCGA 60
Query 104 CGGCGCCAGCTTCACNNNNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGC 163
||| |||||||| || ||||||||| ||||| || |||||
Sbjct 61 CGGTGCCAGCTTGACCACACCGACCAGCATCAGCGGCGCCACTTCGCCGGCGGCACGGGC 120
Query 164 CACGGCGAGGATCATGCCGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCA 223
|||||||||||||||||||||| |||| |||||||| ||||| |||| |||||||||||
Sbjct 121 CACGGCGAGGATCATGCCGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCA 180
Query 224 CAGCGTCTCGGCCTTGGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAAT 283
|||||| || |||||||||||||||| ||||| || || || |||||||| || |||||
Sbjct 181 CAGCGTTTCCGCCTTGGTCGCGCCCAGCGCCAGGGAACCTTCACGCACGGTGCGAGGAAT 240
Query 284 ACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGGAACAGCCAGCAGTGCCAGGGT 343
||||||| |||||||||||||||||||| |||||||| || |||||||| ||||||||
Sbjct 241 CCGCGCCAGGCCTTCTTCGGTGGCCACGATTACCACCGGCACGGCCAGCAGCGCCAGGGT 300
Query 344 CAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGGCGCCGGCAGTGCTTCGGGGAA 403
|| ||| ||||||| || | |||| ||||| |||||||| |||||||| ||||||| |||
Sbjct 301 CAGCGAGGCCCACAACAAGCCCGGTGTACCGAAGGTCGGTGCCGGCAGGGCTTCGGCGAA 360
Query 404 GACCAAGCGGTC 415
|| || ||||||
Sbjct 361 GAACAGGCGGTC 372
>seq2967108
Length=504
Score = 331 bits (366), Expect = 2e-88
Identities = 237/273 (87%), Gaps = 0/273 (0%)
Strand=Plus/Minus
Query 143 CACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGCCGGTCGTCATGGCCGGGCTTGC 202
|||||||||||| |||||||||||||||||||||||||||||| |||| |||||||| ||
Sbjct 504 CACTTCACCGGCGGCGCGGGCCACGGCGAGGATCATGCCGGTCATCATCGCCGGGCTGGC 445
Query 203 CATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTTGGTCGCGCCCAAGGCCAGCGAGCC 262
||| |||| ||||||||||||||||| || |||||||||||||||| |||| |||||
Sbjct 444 CATTGGCAGCACGATCTTCCACAGCGTTTCCGCCTTGGTCGCGCCCAGTGCCAAGGAGCC 385
Query 263 CTCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGG 322
|||||||||||| || ||||| ||||||| ||||||||||||||||| |||||||||||
Sbjct 384 CTCGCGCACGGTGCGAGGAATCCGCGCCAGGCCTTCTTCGGTGGCCACAATCACCACCGG 325
Query 323 AACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGG 382
|| |||||||| |||||||||| ||| |||||||||||| | || ||||| || || ||
Sbjct 324 CACCGCCAGCAGCGCCAGGGTCAGCGAGGCCCACAGCAGGCCTGGCGTACCGAACGTGGG 265
Query 383 CGCCGGCAGTGCTTCGGGGAAGACCAAGCGGTC 415
|||||||| ||||||| ||||| || |||||
Sbjct 264 TGCCGGCAGGGCTTCGGCGAAGAACAGACGGTC 232
>seq3065656
Length=1471
Score = 242 bits (268), Expect = 9e-62
Identities = 182/221 (82%), Gaps = 0/221 (0%)
Strand=Plus/Plus
Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60
||||||| |||||||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct 1251 CGACGTTGGGGCTCTGGAAGCCGACGTCATAGATATGGAAACCCAGGTGCATGATCTTCT 1310
Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120
|||| ||||||||||| |||||||| ||||||| ||||||||||| |||||||||||
Sbjct 1311 GGTCAAGGTGCAGGTACGGGTAGTTACCGTCCAACGGCAGCGACGGGGCCAGCTTCACCA 1370
Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180
||||||||||||||| || ||||||||||||||||||||||
Sbjct 1371 CGCCGACCAGCATCAGCGGCGCCACTTCACCGGCGGCCCGGGCCACGGCGAGGATCATGC 1430
Query 181 CGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTC 221
||||| |||| |||||||| ||||| |||| |||||||||
Sbjct 1431 CGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTC 1471
>seq2979746
Length=557
Score = 203 bits (224), Expect = 8e-50
Identities = 150/182 (82%), Gaps = 0/182 (0%)
Strand=Plus/Minus
Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60
||||||| ||||||||||||||||||||||| || |||||||||| ||||||||| ||||
Sbjct 182 CGACGTTGGGGCTCTGGAAGCCGACGTCATAAATATGGAAGCCCAGGTGCATGATTTTCT 123
Query 61 GGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGACGGCGCCAGCTTCACNN 120
|||||||||||||||| |||||||| ||||||| ||||||||||||||||| |||||
Sbjct 122 GGTCCAGGTGCAGGTACGGGTAGTTGCCGTCCAGCGGCAGCGACGGCGCCAGTTTCACTA 63
Query 121 NNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGCCACGGCGAGGATCATGC 180
||||||||||||||| |||||||||||||||||||||||||
Sbjct 62 CACCCACCAGCATCAGCGGCGCCACTTCACCGGCGGCGCGGGCCACGGCGAGGATCATGC 3
Query 181 CG 182
||
Sbjct 2 CG 1
>seq2895908
Length=325
Score = 179 bits (198), Expect = 9e-43
Identities = 131/152 (86%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 264 TCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGGA 323
|| |||||||| || ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 324 TCACGCACGGTGCGAGGAATCCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGC 265
Query 324 ACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGGC 383
|| |||||||| |||||||||| ||| ||||||| |||| |||| ||||| || |||||
Sbjct 264 ACGGCCAGCAGCGCCAGGGTCAGCGAGGCCCACAACAGGCCCGGCGTACCGAACGTCGGT 205
Query 384 GCCGGCAGTGCTTCGGGGAAGACCAAGCGGTC 415
|||||||| ||||||| ||||| || ||||||
Sbjct 204 GCCGGCAGGGCTTCGGCGAAGAACAGGCGGTC 173
>seq3055437
Length=1240
Score = 176 bits (194), Expect = 1e-41
Identities = 130/152 (86%), Gaps = 0/152 (0%)
Strand=Plus/Minus
Query 264 TCGCGCACGGTACGCGGAATACGCGCCAAACCTTCTTCGGTGGCCACGATCACCACCGGA 323
|| |||||||| || ||||| ||||||| |||||||||||||||||||||||||||||
Sbjct 1239 TCACGCACGGTGCGAGGAATCCGCGCCAGGCCTTCTTCGGTGGCCACGATCACCACCGGC 1180
Query 324 ACAGCCAGCAGTGCCAGGGTCAACGATGCCCACAGCAGGTCCGGGGTACCCAAGGTCGGC 383
|| |||||||| |||||||||| ||| ||||| ||||| |||| || || |||||||||
Sbjct 1179 ACCGCCAGCAGCGCCAGGGTCAGCGAGGCCCAGAGCAGCCCCGGCGTGCCGAAGGTCGGC 1120
Query 384 GCCGGCAGTGCTTCGGGGAAGACCAAGCGGTC 415
|||||||| ||||||| ||||| || |||||
Sbjct 1119 GCCGGCAGGGCTTCGGCGAAGAACAGCCGGTC 1088
>seq2283464
Length=135
Score = 154 bits (170), Expect = 4e-35
Identities = 115/135 (85%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 179 GCCGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTT 238
||||||| |||| |||||||| ||||| |||| ||||||||||||||||| || |||||
Sbjct 1 GCCGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCACAGCGTTTCCGCCTT 60
Query 239 GGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTC 298
||||||||| | ||||| || || || |||||||| || ||||| ||||||| |||||
Sbjct 61 GGTCGCGCCGAGCGCCAGGGAACCTTCACGCACGGTGCGAGGAATCCGCGCCAGGCCTTC 120
Query 299 TTCGGTGGCCACGAT 313
|||||||||||||||
Sbjct 121 TTCGGTGGCCACGAT 135
>seq2285441
Length=136
Score = 150 bits (166), Expect = 4e-34
Identities = 115/136 (85%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 179 GCCGGTCGTCATGGCCGGGCTTGCCATGGGCAAGACGATCTTCCACAGCGTCTCGGCCTT 238
||||||| |||| |||||||| ||||| |||| ||||||||||||||||| || |||||
Sbjct 136 GCCGGTCATCATCGCCGGGCTGGCCATCGGCAGCACGATCTTCCACAGCGTTTCCGCCTT 77
Query 239 GGTCGCGCCCAAGGCCAGCGAGCCCTCGCGCACGGTACGCGGAATACGCGCCAAACCTTC 298
||| ||||| | ||||| || || || |||||||| || ||||| ||||||| |||||
Sbjct 76 GGTTGCGCCGAGTGCCAGGGAACCTTCACGCACGGTGCGAGGAATCCGCGCCAGGCCTTC 17
Query 299 TTCGGTGGCCACGATC 314
||||||||||||||||
Sbjct 16 TTCGGTGGCCACGATC 1
>seq2311960
Length=139
Score = 140 bits (154), Expect = 8e-31
Identities = 110/139 (79%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 44 CAAGTGCATGATCTTCTGGTCCAGGTGCAGGTAGGGGTAGTTCCCGTCCACTGGCAGCGA 103
|| |||||||||||||||||||||||||| ||| |||||||| ||||||| ||||||||
Sbjct 1 CAGGTGCATGATCTTCTGGTCCAGGTGCAAGTACGGGTAGTTGCCGTCCAGCGGCAGCGA 60
Query 104 CGGCGCCAGCTTCACNNNNNNNNNNNNNNNNNNNNNCGCCACTTCACCGGCAGCGCGGGC 163
|||||||||||| || ||||||||||||||| ||||||||
Sbjct 61 CGGCGCCAGCTTGACCACACCCACCAGCATCAGCGGCGCCACTTCACCGGCGGCGCGGGC 120
Query 164 CACGGCGAGGATCATGCCG 182
|||||||||||||||||||
Sbjct 121 CACGGCGAGGATCATGCCG 139
>seq2870869
Length=291
Score = 123 bits (136), Expect = 6e-26
Identities = 77/83 (93%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60
||||||| ||||||||||||||||||||||| || |||||||||| ||||||||||||||
Sbjct 83 CGACGTTGGGGCTCTGGAAGCCGACGTCATAAATATGGAAGCCCAGGTGCATGATCTTCT 24
Query 61 GGTCCAGGTGCAGGTAGGGGTAG 83
|||||||||||| ||| ||||||
Sbjct 23 GGTCCAGGTGCAAGTACGGGTAG 1
>seq2963598
Length=491
Score = 118 bits (130), Expect = 3e-24
Identities = 76/83 (92%), Gaps = 0/83 (0%)
Strand=Plus/Minus
Query 1 CGACGTTCGGGCTCTGGAAGCCGACGTCATAGATGTGGAAGCCCAAGTGCATGATCTTCT 60
||||||| ||||||||||| ||||||||||| || |||||||||| ||||||||||||||
Sbjct 83 CGACGTTGGGGCTCTGGAAACCGACGTCATAAATATGGAAGCCCAGGTGCATGATCTTCT 24
Query 61 GGTCCAGGTGCAGGTAGGGGTAG 83
|||||||||||| ||| ||||||
Sbjct 23 GGTCCAGGTGCAAGTACGGGTAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203253047424
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