Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001787.1 Length=163 Score E Sequences producing significant alignments: (Bits) Value seq3085897 159 3e-37 seq2315517 147 2e-33 seq2939394 145 6e-33 seq296952 93.3 3e-17 seq2970653 89.7 4e-16 seq2525274 86.0 5e-15 seq231363 84.2 2e-14 >seq3085897 Length=3606 Score = 159 bits (176), Expect = 3e-37 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60 |||||||| |||||||||||||||||| ||||||| |||| || |||||||| ||||| Sbjct 1141 TCGATCTATTCCCTGGAAGGCCAGGAACTGACGCCACTGTTCGGGCAGCCGGAGTGGTTT 1200 Query 61 CTCGGGATCCTGCCGAGCCAGCAGGGCAACTTGAAGGTATTGGACACCGCGCGTTGGGTC 120 ||||| |||||||| |||||| ||||| | ||||| ||||||| ||||| ||||| Sbjct 1201 CTCGGCATCCTGCCCAGCCAGGCCGGCAATCTCAAGGTGCTGGACACGGCGCGCTGGGTG 1260 Query 121 ATGCCCGACCGCTATCGGGATGATTTCCGCCAGGGCTTGCA 161 |||||||||||||| || || || || | |||||| |||| Sbjct 1261 ATGCCCGACCGCTACCGTGACGACTTTCAACAGGGCCTGCA 1301 >seq2315517 Length=139 Score = 147 bits (162), Expect = 2e-33 Identities = 116/139 (83%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 14 TGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTCCTCGGGATCCTGC 73 ||||||||||||| |||||||| |||| || || ||||| ||||||||||| ||||||| Sbjct 139 TGGAAGGCCAGGAGTTGACGCCGCTGTTCGGGCAACCGGAGTGGTTCCTCGGCATCCTGC 80 Query 74 CGAGCCAGCAGGGCAACTTGAAGGTATTGGACACCGCGCGTTGGGTCATGCCCGACCGCT 133 | |||||| |||||| | ||||| ||||||| ||||| ||||| ||||||||||||| Sbjct 79 CCAGCCAGGCCGGCAACCTCAAGGTGCTGGACACGGCGCGCTGGGTGATGCCCGACCGCT 20 Query 134 ATCGGGATGATTTCCGCCA 152 | || ||||| || ||||| Sbjct 19 ACCGCGATGACTTTCGCCA 1 >seq2939394 Length=414 Score = 145 bits (160), Expect = 6e-33 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 22 CAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTCCTCGGGATCCTGCCGAGCCAG 81 ||||| |||||||| |||| || || ||||| ||||| ||||| |||||||| |||||| Sbjct 414 CAGGAGCTGACGCCGCTGTTCGGGCAACCGGAGTGGTTTCTCGGCATCCTGCCAAGCCAG 355 Query 82 CAGGGCAACTTGAAGGTATTGGACACCGCGCGTTGGGTCATGCCCGACCGCTATCGGGAT 141 |||||| | ||||| |||||||||| || ||||||||||||||||| || || ||| Sbjct 354 GCCGGCAACCTCAAGGTGCTGGACACCGCACGCTGGGTCATGCCCGACCGTTACCGCGAT 295 Query 142 GATTTCCGCCAGGGCTTGCA 161 || ||||||||||| ||||| Sbjct 294 GACTTCCGCCAGGGTTTGCA 275 >seq296952 Length=726 Score = 93.3 bits (102), Expect = 3e-17 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60 |||||||| || |||||||||||||| |||||||| |||| || || ||||| ||||| Sbjct 380 TCGATCTATTCGCTGGAAGGCCAGGAGCTGACGCCGCTGTTCGGGCAACCGGAGTGGTTT 439 Query 61 CTCGGGATCCTGCCGAGCCAG 81 ||||| |||||||| |||||| Sbjct 440 CTCGGCATCCTGCCAAGCCAG 460 >seq2970653 Length=518 Score = 89.7 bits (98), Expect = 4e-16 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60 ||||| ||||| |||||||||||||| |||||||| |||| || || ||||| |||||| Sbjct 443 TCGATTTACTCGCTGGAAGGCCAGGAGTTGACGCCGCTGTTCGGGCAACCGGAGTGGTTC 502 Query 61 CTCGGGATCCTGCC 74 ||||| |||||||| Sbjct 503 CTCGGCATCCTGCC 516 >seq2525274 Length=170 Score = 86.0 bits (94), Expect = 5e-15 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 94 AAGGTATTGGACACCGCGCGTTGGGTCATGCCCGACCGCTATCGGGATGATTTCCGCCAG 153 ||||| ||||||| ||||| ||||| |||||||||||||| || ||||| || |||||| Sbjct 5 AAGGTGCTGGACACGGCGCGCTGGGTGATGCCCGACCGCTACCGCGATGACTTTCGCCAG 64 Query 154 GGCTTGCAAT 163 |||||||||| Sbjct 65 GGCTTGCAAT 74 >seq231363 Length=1066 Score = 84.2 bits (92), Expect = 2e-14 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60 |||||||| || ||||||||||||| |||||||| |||| || || ||||| |||||| Sbjct 562 TCGATCTATTCGTTGGAAGGCCAGGAGTTGACGCCGCTGTTCGGGCAACCGGAGTGGTTC 621 Query 61 CTCGGGATCCTGCC 74 ||||| |||||||| Sbjct 622 CTCGGCATCCTGCC 635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409761812988