Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001787.1
Length=163
Score E
Sequences producing significant alignments: (Bits) Value
seq3085897 159 3e-37
seq2315517 147 2e-33
seq2939394 145 6e-33
seq296952 93.3 3e-17
seq2970653 89.7 4e-16
seq2525274 86.0 5e-15
seq231363 84.2 2e-14
>seq3085897
Length=3606
Score = 159 bits (176), Expect = 3e-37
Identities = 132/161 (82%), Gaps = 0/161 (0%)
Strand=Plus/Plus
Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60
|||||||| |||||||||||||||||| ||||||| |||| || |||||||| |||||
Sbjct 1141 TCGATCTATTCCCTGGAAGGCCAGGAACTGACGCCACTGTTCGGGCAGCCGGAGTGGTTT 1200
Query 61 CTCGGGATCCTGCCGAGCCAGCAGGGCAACTTGAAGGTATTGGACACCGCGCGTTGGGTC 120
||||| |||||||| |||||| ||||| | ||||| ||||||| ||||| |||||
Sbjct 1201 CTCGGCATCCTGCCCAGCCAGGCCGGCAATCTCAAGGTGCTGGACACGGCGCGCTGGGTG 1260
Query 121 ATGCCCGACCGCTATCGGGATGATTTCCGCCAGGGCTTGCA 161
|||||||||||||| || || || || | |||||| ||||
Sbjct 1261 ATGCCCGACCGCTACCGTGACGACTTTCAACAGGGCCTGCA 1301
>seq2315517
Length=139
Score = 147 bits (162), Expect = 2e-33
Identities = 116/139 (83%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 14 TGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTCCTCGGGATCCTGC 73
||||||||||||| |||||||| |||| || || ||||| ||||||||||| |||||||
Sbjct 139 TGGAAGGCCAGGAGTTGACGCCGCTGTTCGGGCAACCGGAGTGGTTCCTCGGCATCCTGC 80
Query 74 CGAGCCAGCAGGGCAACTTGAAGGTATTGGACACCGCGCGTTGGGTCATGCCCGACCGCT 133
| |||||| |||||| | ||||| ||||||| ||||| ||||| |||||||||||||
Sbjct 79 CCAGCCAGGCCGGCAACCTCAAGGTGCTGGACACGGCGCGCTGGGTGATGCCCGACCGCT 20
Query 134 ATCGGGATGATTTCCGCCA 152
| || ||||| || |||||
Sbjct 19 ACCGCGATGACTTTCGCCA 1
>seq2939394
Length=414
Score = 145 bits (160), Expect = 6e-33
Identities = 116/140 (83%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 22 CAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTCCTCGGGATCCTGCCGAGCCAG 81
||||| |||||||| |||| || || ||||| ||||| ||||| |||||||| ||||||
Sbjct 414 CAGGAGCTGACGCCGCTGTTCGGGCAACCGGAGTGGTTTCTCGGCATCCTGCCAAGCCAG 355
Query 82 CAGGGCAACTTGAAGGTATTGGACACCGCGCGTTGGGTCATGCCCGACCGCTATCGGGAT 141
|||||| | ||||| |||||||||| || ||||||||||||||||| || || |||
Sbjct 354 GCCGGCAACCTCAAGGTGCTGGACACCGCACGCTGGGTCATGCCCGACCGTTACCGCGAT 295
Query 142 GATTTCCGCCAGGGCTTGCA 161
|| ||||||||||| |||||
Sbjct 294 GACTTCCGCCAGGGTTTGCA 275
>seq296952
Length=726
Score = 93.3 bits (102), Expect = 3e-17
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60
|||||||| || |||||||||||||| |||||||| |||| || || ||||| |||||
Sbjct 380 TCGATCTATTCGCTGGAAGGCCAGGAGCTGACGCCGCTGTTCGGGCAACCGGAGTGGTTT 439
Query 61 CTCGGGATCCTGCCGAGCCAG 81
||||| |||||||| ||||||
Sbjct 440 CTCGGCATCCTGCCAAGCCAG 460
>seq2970653
Length=518
Score = 89.7 bits (98), Expect = 4e-16
Identities = 64/74 (86%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60
||||| ||||| |||||||||||||| |||||||| |||| || || ||||| ||||||
Sbjct 443 TCGATTTACTCGCTGGAAGGCCAGGAGTTGACGCCGCTGTTCGGGCAACCGGAGTGGTTC 502
Query 61 CTCGGGATCCTGCC 74
||||| ||||||||
Sbjct 503 CTCGGCATCCTGCC 516
>seq2525274
Length=170
Score = 86.0 bits (94), Expect = 5e-15
Identities = 61/70 (87%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 94 AAGGTATTGGACACCGCGCGTTGGGTCATGCCCGACCGCTATCGGGATGATTTCCGCCAG 153
||||| ||||||| ||||| ||||| |||||||||||||| || ||||| || ||||||
Sbjct 5 AAGGTGCTGGACACGGCGCGCTGGGTGATGCCCGACCGCTACCGCGATGACTTTCGCCAG 64
Query 154 GGCTTGCAAT 163
||||||||||
Sbjct 65 GGCTTGCAAT 74
>seq231363
Length=1066
Score = 84.2 bits (92), Expect = 2e-14
Identities = 63/74 (85%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 1 TCGATCTACTCCCTGGAAGGCCAGGAAATGACGCCGTTGTTTGGCCAGCCGGAATGGTTC 60
|||||||| || ||||||||||||| |||||||| |||| || || ||||| ||||||
Sbjct 562 TCGATCTATTCGTTGGAAGGCCAGGAGTTGACGCCGCTGTTCGGGCAACCGGAGTGGTTC 621
Query 61 CTCGGGATCCTGCC 74
||||| ||||||||
Sbjct 622 CTCGGCATCCTGCC 635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 409761812988
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |