Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq3004477 165 7e-39 seq2215923 150 1e-34 seq1780862 147 2e-33 seq1974555 141 7e-32 seq2239129 138 9e-31 seq2773107 134 1e-29 seq1909314 134 1e-29 seq1892445 134 1e-29 seq210951 127 2e-27 seq1841196 105 5e-21 seq1683754 104 2e-20 seq817764 104 2e-20 seq1780863 87.8 1e-15 seq210950 80.6 2e-13 >seq3004477 Length=691 Score = 165 bits (182), Expect = 7e-39 Identities = 133/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 1 TCGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCG 60 |||||||||||||| ||||||||||||||| |||||| || | | ||| | |||||| Sbjct 269 TCGAGTTGCAGACTCCAATCCGGACTACGACGCACTTTATGAGGTCCGCTTGCTCTCGCG 328 Query 61 GGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCA 120 | | || | || |||||| |||||||| ||||||| |||||||| | ||||||||| Sbjct 329 AGGTCGCTTCTCTTTGTATGCGCCATTGTAGCACGTGTGTAGCCCTACTCGTAAGGGCCA 388 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||||||||||||||| |||| |||| Sbjct 389 TGATGACTTGACGTCATCCCCACCTTCCTCCAGTTTATCAC 429 >seq2215923 Length=129 Score = 150 bits (166), Expect = 1e-34 Identities = 109/126 (87%), Gaps = 0/126 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||||||||||||| |||||||| ||||| ||||||||| ||||||||| ||| Sbjct 4 TTTGTGGGATTAGCTCCACCTCGCGGCTTGGCAACCCTCTGTACCGACCATTGTAGCACG 63 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 || | ||||| || |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 64 TGCGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTT 123 Query 156 TGTCAC 161 |||||| Sbjct 124 TGTCAC 129 >seq1780862 Length=127 Score = 147 bits (162), Expect = 2e-33 Identities = 107/124 (86%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||||||||||||| |||||||| ||||| ||||||||| ||||||||| ||| Sbjct 124 TTTGTGGGATTAGCTCCACCTCGCGGCTTGGCAACCCTCTGTACCGACCATTGTAGCACG 65 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 ||| ||||| || |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 64 GGTGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTT 5 Query 156 TGTC 159 |||| Sbjct 4 TGTC 1 >seq1974555 Length=127 Score = 141 bits (156), Expect = 7e-32 Identities = 104/121 (86%), Gaps = 0/121 (0%) Strand=Plus/Plus Query 36 TTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACG 95 ||| ||||||||||||| |||||||| ||||| ||||||||| ||||||||| || Sbjct 7 TTTGTGGGATTAGCTCCACCTCGCGGCTTGGCAACCCTCTGTACCGACCATTGTAGCCCG 66 Query 96 TGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTT 155 |||| ||||| || |||||||||||| ||||||||||||||||||||||||||||||| Sbjct 67 TGTGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTT 126 Query 156 T 156 | Sbjct 127 T 127 >seq2239129 Length=131 Score = 138 bits (152), Expect = 9e-31 Identities = 109/131 (83%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 6 TTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTG 65 ||||||||| | |||||||||||||| ||| ||||||||||||| |||||||| ||| Sbjct 131 TTGCAGACTGCGATCCGGACTACGATCGGTTTTGTGGGATTAGCTCCACCTCGCGGCTTG 72 Query 66 GCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGG 125 || ||||||||| ||||||||| ||||||| ||||| || |||||||||||| | Sbjct 71 GCACCCCTCTGTACCGACCATTGTAGCACGTGTGTAGCCCAGGCCGTAAGGGCCATGATG 12 Query 126 ACTTGACGTCA 136 ||||||||||| Sbjct 11 ACTTGACGTCA 1 >seq2773107 Length=222 Score = 134 bits (148), Expect = 1e-29 Identities = 125/156 (80%), Gaps = 2/156 (1%) Strand=Plus/Plus Query 7 TGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTGG 66 |||||| | ||||||| ||| ||| |||| | |||||||||| ||| |||| || | Sbjct 1 TGCAGAGTGCAATCCGAACTGAGATGG-CTTTTGGAGATTAGCTCCACCTTGCGGTTTCG 59 Query 67 CGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGA 126 | |||| ||| ||||||||| ||||||| ||||| ||| ||||||||||||||| Sbjct 60 CTGCCCATTGTCACCACCATTGTAGCACGTGTGTAGCCCAGCCCGTAAGGGCCATGAGGA 119 Query 127 CTTGACGTCATCCCCACCTTCCTC-CGGTTTGTCAC 161 |||||||||||||||||||||||| ||| || |||| Sbjct 120 CTTGACGTCATCCCCACCTTCCTCTCGGCTTATCAC 155 >seq1909314 Length=127 Score = 134 bits (148), Expect = 1e-29 Identities = 106/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 19 TCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTA 78 ||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||||||| Sbjct 127 TCCGGACTACGATCGGTTTTGTGGGATTAGCTCCACCTCGCGGCTTGGCAACCCTCTGTA 68 Query 79 TGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATC 138 |||||||| ||||||| ||||| || |||||||||||| |||||||||||||| Sbjct 67 CCGCCCATTGTAGCACGTGTGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACGTCATC 8 Query 139 CCCACCT 145 ||||||| Sbjct 7 CCCACCT 1 >seq1892445 Length=127 Score = 134 bits (148), Expect = 1e-29 Identities = 106/127 (83%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 19 TCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTA 78 ||||||||||||| ||| ||||||||||||| |||||||| ||||| ||||||||| Sbjct 127 TCCGGACTACGATCGGTTTTGTGGGATTAGCTCCACCTCGCGGCTTGGCAACCCTCTGTA 68 Query 79 TGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATC 138 |||||||| ||||||| ||||| || |||||||||||| |||||||||||||| Sbjct 67 CCGGCCATTGTAGCACGTGTGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACGTCATC 8 Query 139 CCCACCT 145 ||||||| Sbjct 7 CCCACCT 1 >seq210951 Length=492 Score = 127 bits (140), Expect = 2e-27 Identities = 124/160 (78%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| || |||| | |||||||| |||| || Sbjct 269 CGAGTTGCAGCCTACAATCCGAACTGAGAATGGCTTTAAGAGATTAGCTTGGCCTCACGA 210 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 || ||| | | |||| |||||||| ||||||| ||||| |||||||| ||| Sbjct 209 CTTCGCGACTCGTTGTACCATCCATTGTAGCACGTGTGTAGCCCAGGTCATAAGGGGCAT 150 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 || || |||||||||||||||||||||||||||||||||| Sbjct 149 GATGATTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 110 >seq1841196 Length=127 Score = 105 bits (116), Expect = 5e-21 Identities = 76/88 (86%), Gaps = 0/88 (0%) Strand=Plus/Minus Query 74 CTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACG 133 ||||| ||||||||| ||||||| ||||| || |||||||||||| ||||||||| Sbjct 127 CTGTACCGACCATTGTAGCACGTGTGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACG 68 Query 134 TCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| |||||||||||||||||||||||| Sbjct 67 TCACCCCCACCTTCCTCCGGTTTGTCAC 40 >seq1683754 Length=127 Score = 104 bits (114), Expect = 2e-20 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 82 ACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCC 141 ||||||||| ||||||| ||||| || |||||||||||| ||||||||||||||||| Sbjct 4 ACCATTGTAGCACGTGTGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACGTCATCCCC 63 Query 142 ACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||| Sbjct 64 TCCTTCCTCCGGTTTGTCAC 83 >seq817764 Length=110 Score = 104 bits (114), Expect = 2e-20 Identities = 71/80 (89%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 82 ACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCC 141 ||||||||| ||||||| ||||| || |||||||||||| ||||||||||||||||| Sbjct 4 ACCATTGTAGCACGTGTGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACGTCATCCCC 63 Query 142 ACCTTCCTCCGGTTTGTCAC 161 ||||||||||||||||||| Sbjct 64 CCCTTCCTCCGGTTTGTCAC 83 >seq1780863 Length=127 Score = 87.8 bits (96), Expect = 1e-15 Identities = 57/63 (90%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 97 GTGAAGCCCTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTT 156 ||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1 GTGTAGCCCAGGCCGTAAGGGCCATGATGACTTGACGTCATCCCCACCTTCCTCCGGTTT 60 Query 157 GTC 159 ||| Sbjct 61 GTC 63 >seq210950 Length=3273 Score = 80.6 bits (88), Expect = 2e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 110 CATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||| ||||| || |||||||||||||||||||||||||||||||||| Sbjct 1495 CATAAGGGGCATGATGATTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 1444 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403553300670