Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001851.1 Length=140 Score E Sequences producing significant alignments: (Bits) Value seq10722 161 7e-38 seq1924965 127 1e-27 seq1924964 127 1e-27 seq167505 123 2e-26 seq2216147 120 2e-25 seq289338 116 3e-24 seq1974872 91.5 1e-16 seq1974871 91.5 1e-16 seq1974528 91.5 1e-16 seq1316644 91.5 1e-16 >seq10722 Length=3686 Score = 161 bits (178), Expect = 7e-38 Identities = 119/139 (86%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 |||||||||||||||||||||||||||||||||||| | |||||||||||||| |||||| Sbjct 680 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTAAGACCTG 739 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||||| |||||| || || |||||||| |||||| ||| |||| |||||||| Sbjct 740 CTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCTAGCTTATGCCTTTGCACTAA 799 Query 121 CACTACGATTTCCGACCGT 139 | ||||| ||||||||| Sbjct 800 CCTCACGATGTCCGACCGT 818 >seq1924965 Length=127 Score = 127 bits (140), Expect = 1e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 123 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTT 64 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| | |||||| | ||| ||||||| |||||| | |||||||| || Sbjct 63 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 11 >seq1924964 Length=127 Score = 127 bits (140), Expect = 1e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| Sbjct 123 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTC 64 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| | |||||| | ||| ||||||| |||||| | |||||||| || Sbjct 63 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 11 >seq167505 Length=383 Score = 123 bits (136), Expect = 2e-26 Identities = 95/113 (84%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 ||||||||||||||||||||||||||| ||||| || | |||||||||||||| ||||| Sbjct 37 TACCTTTTATCCGTTGAGCGATGGCCCCTCCATACAGAACCACCGGATCACTAAGACCTA 96 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||||| | |||||| | ||| ||||||| |||||| | |||||||| || Sbjct 97 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 149 >seq2216147 Length=129 Score = 120 bits (132), Expect = 2e-25 Identities = 93/111 (84%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 3 CCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCT 62 ||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| || Sbjct 1 CCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACT 60 Query 63 TTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113 |||| |||||| | ||| ||||||| |||||| | |||||||| || Sbjct 61 TTCGTCCCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 111 >seq289338 Length=1132 Score = 116 bits (128), Expect = 3e-24 Identities = 108/137 (79%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60 || |||||||||||||||||||||||||||||| | | |||||||||||||| | || Sbjct 697 TAGCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGCCCGA 756 Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120 |||||| |||||| | |||| | ||||||| |||||| | ||| |||| || |||| | Sbjct 757 CTTTCGTCCCTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTCTGCCTTTACACTCT 816 Query 121 CACTACGATTTCCGACC 137 | ||||||| ||| Sbjct 817 ACGAATGATTTCCAACC 833 >seq1974872 Length=127 Score = 91.5 bits (100), Expect = 1e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61 |||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| | Sbjct 65 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTAC 124 Query 62 TTT 64 ||| Sbjct 125 TTT 127 >seq1974871 Length=127 Score = 91.5 bits (100), Expect = 1e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61 |||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| | Sbjct 65 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTAC 124 Query 62 TTT 64 ||| Sbjct 125 TTT 127 >seq1974528 Length=127 Score = 91.5 bits (100), Expect = 1e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Minus Query 3 CCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCT 62 ||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| || Sbjct 63 CCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACT 4 Query 63 TTC 65 ||| Sbjct 3 TTC 1 >seq1316644 Length=121 Score = 91.5 bits (100), Expect = 1e-16 Identities = 58/63 (92%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61 |||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| | Sbjct 59 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTAC 118 Query 62 TTT 64 ||| Sbjct 119 TTT 121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 341807913700