Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001851.1
Length=140
Score E
Sequences producing significant alignments: (Bits) Value
seq10722 161 7e-38
seq1924965 127 1e-27
seq1924964 127 1e-27
seq167505 123 2e-26
seq2216147 120 2e-25
seq289338 116 3e-24
seq1974872 91.5 1e-16
seq1974871 91.5 1e-16
seq1974528 91.5 1e-16
seq1316644 91.5 1e-16
>seq10722
Length=3686
Score = 161 bits (178), Expect = 7e-38
Identities = 119/139 (86%), Gaps = 0/139 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|||||||||||||||||||||||||||||||||||| | |||||||||||||| ||||||
Sbjct 680 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTAAGACCTG 739
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||||| |||||| || || |||||||| |||||| ||| |||| ||||||||
Sbjct 740 CTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCTAGCTTATGCCTTTGCACTAA 799
Query 121 CACTACGATTTCCGACCGT 139
| ||||| |||||||||
Sbjct 800 CCTCACGATGTCCGACCGT 818
>seq1924965
Length=127
Score = 127 bits (140), Expect = 1e-27
Identities = 96/113 (85%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 123 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTT 64
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113
|||||| | |||||| | ||| ||||||| |||||| | |||||||| ||
Sbjct 63 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 11
>seq1924964
Length=127
Score = 127 bits (140), Expect = 1e-27
Identities = 96/113 (85%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||||||||| || | |||||||||||||| |||||
Sbjct 123 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTC 64
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113
|||||| | |||||| | ||| ||||||| |||||| | |||||||| ||
Sbjct 63 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 11
>seq167505
Length=383
Score = 123 bits (136), Expect = 2e-26
Identities = 95/113 (84%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
||||||||||||||||||||||||||| ||||| || | |||||||||||||| |||||
Sbjct 37 TACCTTTTATCCGTTGAGCGATGGCCCCTCCATACAGAACCACCGGATCACTAAGACCTA 96
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113
|||||| | |||||| | ||| ||||||| |||||| | |||||||| ||
Sbjct 97 CTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 149
>seq2216147
Length=129
Score = 120 bits (132), Expect = 2e-25
Identities = 93/111 (84%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 3 CCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCT 62
||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| ||
Sbjct 1 CCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACT 60
Query 63 TTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATT 113
|||| |||||| | ||| ||||||| |||||| | |||||||| ||
Sbjct 61 TTCGTCCCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 111
>seq289338
Length=1132
Score = 116 bits (128), Expect = 3e-24
Identities = 108/137 (79%), Gaps = 0/137 (0%)
Strand=Plus/Plus
Query 1 TACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTG 60
|| |||||||||||||||||||||||||||||| | | |||||||||||||| | ||
Sbjct 697 TAGCTTTTATCCGTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGCCCGA 756
Query 61 CTTTCGCATCTGCTCTAGTTGTTGCTCTCGCAATCAAGCACACTTTTGCCATTGCACTAT 120
|||||| |||||| | |||| | ||||||| |||||| | ||| |||| || |||| |
Sbjct 757 CTTTCGTCCCTGCTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTCTGCCTTTACACTCT 816
Query 121 CACTACGATTTCCGACC 137
| ||||||| |||
Sbjct 817 ACGAATGATTTCCAACC 833
>seq1974872
Length=127
Score = 91.5 bits (100), Expect = 1e-16
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61
|||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| |
Sbjct 65 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTAC 124
Query 62 TTT 64
|||
Sbjct 125 TTT 127
>seq1974871
Length=127
Score = 91.5 bits (100), Expect = 1e-16
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61
|||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| |
Sbjct 65 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTAC 124
Query 62 TTT 64
|||
Sbjct 125 TTT 127
>seq1974528
Length=127
Score = 91.5 bits (100), Expect = 1e-16
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Minus
Query 3 CCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGCT 62
||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| ||
Sbjct 63 CCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACT 4
Query 63 TTC 65
|||
Sbjct 3 TTC 1
>seq1316644
Length=121
Score = 91.5 bits (100), Expect = 1e-16
Identities = 58/63 (92%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 2 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATTCATAGCCACCGGATCACTATGACCTGC 61
|||||||||||||||||||||||||||||||| || | |||||||||||||| ||||| |
Sbjct 59 ACCTTTTATCCGTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTAC 118
Query 62 TTT 64
|||
Sbjct 119 TTT 121
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 341807913700
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |