Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001946.1 Length=179 Score E Sequences producing significant alignments: (Bits) Value seq10722 264 1e-68 seq1924965 123 2e-26 seq1924964 123 2e-26 seq2216147 120 3e-25 seq167505 120 3e-25 seq289338 111 1e-22 seq2007118 84.2 2e-14 seq1974528 82.4 7e-14 seq1974872 80.6 2e-13 seq1974871 80.6 2e-13 seq1855710 80.6 2e-13 seq1316644 80.6 2e-13 seq1027038 80.6 2e-13 seq1855711 78.8 9e-13 >seq10722 Length=3686 Score = 264 bits (292), Expect = 1e-68 Identities = 152/156 (97%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 692 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTAAGACCTGCTTTCGCACCTG 751 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 752 CTCGAGCCGTCACTCTCGCAGTCAAGCTAGCTTATGCCTTTGCACTAACCTCACGATGTC 811 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 ||||||||||||||| |||||||||||||||||||| Sbjct 812 CGACCGTGATTAGCTAACCTTCGTGCTCCTCCGTTA 847 >seq1924965 Length=127 Score = 123 bits (136), Expect = 2e-26 Identities = 88/101 (87%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 111 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTTCTTTCGTACCTG 52 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 ||||| ||| |||||||||||||| |||| |||| || Sbjct 51 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 11 >seq1924964 Length=127 Score = 123 bits (136), Expect = 2e-26 Identities = 88/101 (87%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 111 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTCCTTTCGTACCTG 52 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 ||||| ||| |||||||||||||| |||| |||| || Sbjct 51 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 11 >seq2216147 Length=129 Score = 120 bits (132), Expect = 3e-25 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||||| |||| Sbjct 11 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTCCCTG 70 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 ||||| ||| |||||||||||||| |||| |||| || Sbjct 71 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 111 >seq167505 Length=383 Score = 120 bits (132), Expect = 3e-25 Identities = 87/101 (86%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||| ||||| ||||||||||||||||||| ||||| |||||| ||||| Sbjct 49 GTTGAGCGATGGCCCCTCCATACAGAACCACCGGATCACTAAGACCTACTTTCGTACCTG 108 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATT 124 ||||| ||| |||||||||||||| |||| |||| || Sbjct 109 CTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTT 149 >seq289338 Length=1132 Score = 111 bits (122), Expect = 1e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTCGCACCTG 83 ||||||||||||||||||||| | ||||||||||||||||| | || |||||| |||| Sbjct 709 GTTGAGCGATGGCCCTTCCATGCGGAACCACCGGATCACTAAGCCCGACTTTCGTCCCTG 768 Query 84 CTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCACTAACCTCACGATGTC 143 ||||| || |||||||||||||| ||| |||| || |||| | | ||| || Sbjct 769 CTCGACTTGTAGGTCTCGCAGTCAAGCTCCCTTCTGCCTTTACACTCTACGAATGATTTC 828 Query 144 CGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | ||| | | || ||||| | || ||||||||| Sbjct 829 CAACCATTCTGAGGGAACCTTTGGGCGCCTCCGTTA 864 >seq2007118 Length=127 Score = 84.2 bits (92), Expect = 2e-14 Identities = 85/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 69 CTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTGCAC 128 || |||||| |||||||||| ||| |||||||||||||| |||| |||| || || Sbjct 127 CTACTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTATAC 68 Query 129 TAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 | || |||| |||||||| | ||| |||||||| ||||||||||| Sbjct 67 TCTCCGACCGATTTCCGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTA 17 >seq1974528 Length=127 Score = 82.4 bits (90), Expect = 7e-14 Identities = 50/53 (94%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTTC 76 ||||||||||||||||||||| ||||||||||||||||||| ||||| ||||| Sbjct 53 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTTC 1 >seq1974872 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTT 75 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct 76 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTT 127 >seq1974871 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTT 75 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct 76 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTT 127 >seq1855710 Length=127 Score = 80.6 bits (88), Expect = 2e-13 Identities = 86/114 (75%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 66 GACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTG 125 ||||| |||||| |||||||||| ||| |||||||||||||| |||| |||| || Sbjct 3 GACCTACTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTA 62 Query 126 CACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTTA 179 || | |||| |||||||| | ||| |||||||| ||||||||||| Sbjct 63 TCCTCTACGACCGATTTCCGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTTA 116 >seq1316644 Length=121 Score = 80.6 bits (88), Expect = 2e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Plus Query 24 GTTGAGCGATGGCCCTTCCATTCAGAACCACCGGATCACTATGACCTGCTTT 75 ||||||||||||||||||||| ||||||||||||||||||| ||||| |||| Sbjct 70 GTTGAGCGATGGCCCTTCCATACAGAACCACCGGATCACTAAGACCTACTTT 121 >seq1027038 Length=115 Score = 80.6 bits (88), Expect = 2e-13 Identities = 88/115 (77%), Gaps = 4/115 (3%) Strand=Plus/Plus Query 66 GACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCAT-- 123 ||||| |||||| |||||||||| ||| |||||||||||||| |||| |||| | Sbjct 3 GACCTACTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTA 62 Query 124 TGCACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTT 178 ||| ||| | |||| |||||||| | ||| |||||||| |||||||||| Sbjct 63 TGCTCTA--CGACCGATTTCCGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTT 115 >seq1855711 Length=127 Score = 78.8 bits (86), Expect = 9e-13 Identities = 85/113 (75%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 66 GACCTGCTTTCGCACCTGCTCGAGCCGTCACTCTCGCAGTCAAGCCAGCTTATGCCATTG 125 ||||| |||||| |||||||||| ||| |||||||||||||| |||| |||| || Sbjct 3 GACCTACTTTCGTACCTGCTCGACGTGTCTGTCTCGCAGTCAAGCGCGCTTTTGCCTTTA 62 Query 126 CACTAACCTCACGATGTCCGACCGTGATTAGCTGACCTTCGTGCTCCTCCGTT 178 || | |||| |||||||| | ||| |||||||| |||||||||| Sbjct 63 TTCTCTACGACCGATTTCCGACCGGTCTGAGCGCACCTTCGTACTCCTCCGTT 115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 459429911532