Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001989.1
Length=469
Score E
Sequences producing significant alignments: (Bits) Value
seq3020867 677 0.0
seq124771 639 0.0
seq3025007 603 3e-170
seq300730 459 7e-127
seq2715325 269 7e-70
seq3038788 257 5e-66
seq2631946 257 5e-66
seq2727040 120 8e-25
>seq3020867
Length=811
Score = 677 bits (750), Expect = 0.0
Identities = 431/468 (92%), Gaps = 0/468 (0%)
Strand=Plus/Plus
Query 2 GAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTAC 61
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||||||
Sbjct 137 GAGCCCAGCGGCGGCAATACCGGCATTGGCCTGGTGATGGCCGGCAATGTGCTGGGCTAC 196
Query 62 AAAGTGGTGCTGGTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCTC 121
|||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct 197 AAAGTGGTGCTGGTGATCCCTGACAACTACAGCCCCGAAAAGCAGAAACTGCTGCGCTTG 256
Query 122 TACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAAG 181
||||||||||||||||||||||| |||||||||||||| ||||||||| |||||||||||
Sbjct 257 TACGGCGCCAAGGTGGTGCTGTCGGACAGCCGCCTCGGGAACAATTCCCACGGCGAAAAG 316
Query 182 TGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGGC 241
||| |||||||||| |||||||||||| | |||||||||||||||||| ||||| |||
Sbjct 317 TGCATGGAACTGCAGTTGGAAAACCCCAATTTCGTGATGCTCAACCAGCAGCGCAACGGC 376
Query 242 GCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGAG 301
||||||||||| ||||||||||||||||||||||| || ||||| ||||| || ||||
Sbjct 377 GCCAACCCGCAGACCCACCGCGACACCACCGCACCGGAAATCCTCCGCGCCTTCGGTGCA 436
Query 302 CGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCACATCACCGGCATCGGC 361
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 437 CAGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCATATCACCGGCATCGGC 496
Query 362 GAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGCGTCATGGGCGTGGAGCCGGAAGAGTGC 421
|||||||||||||| |||||||||| | |||| ||||||||||||||||||||||| |||
Sbjct 497 GAAACCCTCAAGGCGGCCTGGCCGGCGATGCGTGTCATGGGCGTGGAGCCGGAAGAATGC 556
Query 422 GACCTGCTGAAAAACCAGCACGCGCCGCACCATATCCAGGGCCTGTCG 469
|||||||| || |||||||||| ||||||||||||||||||||||||
Sbjct 557 GACCTGCTCAAGGACCAGCACGCACCGCACCATATCCAGGGCCTGTCG 604
>seq124771
Length=2256
Score = 639 bits (708), Expect = 0.0
Identities = 423/469 (90%), Gaps = 0/469 (0%)
Strand=Plus/Plus
Query 1 CGAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTA 60
|||||||||||||||||| ||||||||||||||||||||||| ||||| || ||||||||
Sbjct 273 CGAGCCCAGCGGCGGCAATACCGGCATTGGCCTGGTGATGGCCGGCAATGTACTGGGCTA 332
Query 61 CAAAGTGGTGCTGGTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCT 120
||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| |
Sbjct 333 CAAAGTGGTGCTGGTGATCCCTGATAACTACAGCCCCGAAAAGCAGAAACTGCTGCGTTT 392
Query 121 CTACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAA 180
||||||||||| ||||||||||| ||||||||||| || ||||||||| ||||||||||
Sbjct 393 ATACGGCGCCAAAGTGGTGCTGTCCGACAGCCGCCTGGGCAACAATTCCCACGGCGAAAA 452
Query 181 GTGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGG 240
|||| |||||||||| |||||||||||| || |||||||||||||||||| || |||||
Sbjct 453 GTGCATGGAACTGCAGTTGGAAAACCCCAACTTCGTGATGCTCAACCAGCAGCGTAATGG 512
Query 241 CGCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGA 300
|||||||||||| || |||||||||||||||||||| || ||||| ||||| || || ||
Sbjct 513 CGCCAACCCGCAGACTCACCGCGACACCACCGCACCGGAAATCCTCCGCGCGTTCGGCGA 572
Query 301 GCGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCACATCACCGGCATCGG 360
|| ||| |||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 573 GCAGCGTGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCATATCACTGGCATCGG 632
Query 361 CGAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGCGTCATGGGCGTGGAGCCGGAAGAGTG 420
||||||||||||||| |||||||| | | ||||||||||||| ||||| ||||| |||||
Sbjct 633 CGAAACCCTCAAGGCGGCCTGGCCCGCGATGCGCGTCATGGGTGTGGAACCGGAGGAGTG 692
Query 421 CGACCTGCTGAAAAACCAGCACGCGCCGCACCATATCCAGGGCCTGTCG 469
||||||||| || |||||||||| |||||||| |||||||||||||||
Sbjct 693 CGACCTGCTCAAGGACCAGCACGCACCGCACCACATCCAGGGCCTGTCG 741
>seq3025007
Length=847
Score = 603 bits (668), Expect = 3e-170
Identities = 415/469 (88%), Gaps = 0/469 (0%)
Strand=Plus/Plus
Query 1 CGAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTA 60
||| |||||||| ||||| |||||||| |||||||||||||| ||||| ||||| |||||
Sbjct 33 CGAACCCAGCGGTGGCAATACCGGCATCGGCCTGGTGATGGCTGGCAATGTGCTCGGCTA 92
Query 61 CAAAGTGGTGCTGGTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCT 120
|||||||||||||||||| || |||||||||||||| ||||| |||||||||||||||||
Sbjct 93 CAAAGTGGTGCTGGTGATTCCGGACAACTACAGCCCGGAAAAACAGAAGCTGCTGCGCCT 152
Query 121 CTACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAA 180
|| ||||||| ||||||||| || ||||||||||| |||||||| ||| ||||||||||
Sbjct 153 GTATGGCGCCAGGGTGGTGCTCTCGGACAGCCGCCTGGGTAACAACTCCCACGGCGAAAA 212
Query 181 GTGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGG 240
|||| |||| |||| ||||||| |||| ||||||||||||||||||||||||||| ||
Sbjct 213 GTGCATGGAGCTGCTGTTGGAAAATCCCAACTACGTGATGCTCAACCAGCAACGCAACGG 272
Query 241 CGCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGA 300
||||||||||||||||||||||||||||||||| || || ||||| || || ||||| ||
Sbjct 273 CGCCAACCCGCAAACCCACCGCGACACCACCGCGCCGGAAATCCTCCGTGCCTTTGGCGA 332
Query 301 GCGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCACATCACCGGCATCGG 360
||||| ||||||||||||||||||||||||||||||||||| || ||||||| |||||
Sbjct 333 ACGGCGTGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGGCATCTCACCGGGATCGG 392
Query 361 CGAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGCGTCATGGGCGTGGAGCCGGAAGAGTG 420
|||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || ||
Sbjct 393 CGAAACCCTCAAGGCCGCCTGGCCGGCACTGCGCGTGATGGGCGTGGAACCGGAGGAATG 452
Query 421 CGACCTGCTGAAAAACCAGCACGCGCCGCACCATATCCAGGGCCTGTCG 469
||||||||| || ||| |||||| |||||| |||||||||||||||
Sbjct 453 CGACCTGCTCAAGGACCGGCACGCCCCGCACGCCATCCAGGGCCTGTCG 501
>seq300730
Length=466
Score = 459 bits (508), Expect = 7e-127
Identities = 304/337 (90%), Gaps = 0/337 (0%)
Strand=Plus/Minus
Query 1 CGAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTA 60
|||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||| ||
Sbjct 337 CGAGCCCAGCGGTGGCAACACCGGCATTGGACTGGTGATGGCCGGCAACGTGTTGGGTTA 278
Query 61 CAAAGTGGTGCTGGTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCT 120
||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||
Sbjct 277 CAAAGTGGTGCTGGTGATCCCGGACAACTACAGGCCCGAAAAGCAGAAACTGCTGCGCCT 218
Query 121 CTACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAA 180
||||| |||| |||||||||||| ||||||||||| || ||||| ||| ||||||||||
Sbjct 217 GTACGGTGCCAGGGTGGTGCTGTCGGACAGCCGCCTGGGGAACAACTCCCACGGCGAAAA 158
Query 181 GTGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGG 240
|||| |||| ||||| ||||||||||||||||||||||||||||| ||||| || || ||
Sbjct 157 GTGCATGGAGCTGCAGCTGGAAAACCCCAGCTACGTGATGCTCAATCAGCAGCGTAACGG 98
Query 241 CGCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGA 300
|||||| |||||||||||||||||||||||||| || || ||||| ||||| || |||||
Sbjct 97 CGCCAATCCGCAAACCCACCGCGACACCACCGCCCCGGAAATCCTCCGCGCGTTCGGTGA 38
Query 301 GCGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACC 337
||||||||||| || |||||||||||||||||||||
Sbjct 37 ACGGCGCGTGGATTATTTCGTCAGCGGCATCGGCACC 1
>seq2715325
Length=202
Score = 269 bits (298), Expect = 7e-70
Identities = 181/202 (90%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 136 GGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAAGTGCCTGGAACTGCA 195
||||||||| ||||||||||| || ||||| ||| |||||||||||||| |||| |||||
Sbjct 1 GGTGCTGTCGGACAGCCGCCTGGGGAACAACTCCCACGGCGAAAAGTGCATGGAGCTGCA 60
Query 196 ACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGGCGCCAACCCGCAAAC 255
|| |||||||||||||||||||||||||||||||| || || |||||||| ||||||||
Sbjct 61 GCTCGAAAACCCCAGCTACGTGATGCTCAACCAGCAGCGTAACGGCGCCAATCCGCAAAC 120
Query 256 CCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGAGCGGCGCGTGGACTA 315
||||||||||||||||||||| || ||||| ||||| || ||||| ||||||||||| ||
Sbjct 121 CCACCGCGACACCACCGCACCGGAAATCCTCCGCGCGTTCGGTGAACGGCGCGTGGATTA 180
Query 316 CTTCGTCAGCGGCATCGGCACC 337
|||||||||||||||||||||
Sbjct 181 TTTCGTCAGCGGCATCGGCACC 202
>seq3038788
Length=993
Score = 257 bits (284), Expect = 5e-66
Identities = 174/195 (89%), Gaps = 0/195 (0%)
Strand=Plus/Plus
Query 275 CCCGAGATCCTGCGCGCTTTTGGTGAGCGGCGCGTGGACTACTTCGTCAGCGGCATCGGC 334
|| || ||||| ||||| || ||||| ||||||||||| || ||||||||||||||||||
Sbjct 1 CCGGAAATCCTCCGCGCGTTCGGTGAACGGCGCGTGGATTATTTCGTCAGCGGCATCGGC 60
Query 335 ACCGGTGGCCACATCACCGGCATCGGCGAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGC 394
||||| |||||| |||| |||||||||||||| || |||||||||||||| | |||||
Sbjct 61 ACCGGCGGCCACCTCACGGGCATCGGCGAAACGCTGAAGGCCGCCTGGCCTGCACTGCGG 120
Query 395 GTCATGGGCGTGGAGCCGGAAGAGTGCGACCTGCTGAAAAACCAGCACGCGCCGCACCAT 454
|| ||||||||||| ||||| || ||||||||||||||||||||||||||||||||||||
Sbjct 121 GTGATGGGCGTGGAACCGGAGGAATGCGACCTGCTGAAAAACCAGCACGCGCCGCACCAT 180
Query 455 ATCCAGGGCCTGTCG 469
|||||||||||||||
Sbjct 181 ATCCAGGGCCTGTCG 195
>seq2631946
Length=185
Score = 257 bits (284), Expect = 5e-66
Identities = 168/185 (91%), Gaps = 0/185 (0%)
Strand=Plus/Minus
Query 14 GGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTACAAAGTGGTGCTG 73
||||||||||||||||| ||||||||||| ||||||||| |||| |||||||||||||||
Sbjct 185 GGCAACACCGGCATTGGACTGGTGATGGCCGGCAACGTGTTGGGTTACAAAGTGGTGCTG 126
Query 74 GTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCTCTACGGCGCCAAG 133
|||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||| |
Sbjct 125 GTGATCCCGGACAACTACAGCCCCGAAAAGCAGAAACTGCTGCGCCTGTACGGTGCCAGG 66
Query 134 GTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAAGTGCCTGGAACTG 193
||||||||||| ||||||||||| || ||||| ||| |||||||||||||| |||| |||
Sbjct 65 GTGGTGCTGTCGGACAGCCGCCTGGGGAACAACTCCCACGGCGAAAAGTGCATGGAGCTG 6
Query 194 CAACT 198
|| ||
Sbjct 5 CAGCT 1
>seq2727040
Length=205
Score = 120 bits (132), Expect = 8e-25
Identities = 72/76 (95%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 1 CGAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTA 60
|||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| ||
Sbjct 76 CGAGCCCAGCGGCGGCAACACCGGCATTGGACTGGTGATGGCCGGCAACGTGTTGGGTTA 17
Query 61 CAAAGTGGTGCTGGTG 76
||||||||||||||||
Sbjct 16 CAAAGTGGTGCTGGTG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1355210262176
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