Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001989.1 Length=469 Score E Sequences producing significant alignments: (Bits) Value seq3020867 677 0.0 seq124771 639 0.0 seq3025007 603 3e-170 seq300730 459 7e-127 seq2715325 269 7e-70 seq3038788 257 5e-66 seq2631946 257 5e-66 seq2727040 120 8e-25 >seq3020867 Length=811 Score = 677 bits (750), Expect = 0.0 Identities = 431/468 (92%), Gaps = 0/468 (0%) Strand=Plus/Plus Query 2 GAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTAC 61 ||||||||||||||||| ||||||||||||||||||||||| ||||| |||||||||||| Sbjct 137 GAGCCCAGCGGCGGCAATACCGGCATTGGCCTGGTGATGGCCGGCAATGTGCTGGGCTAC 196 Query 62 AAAGTGGTGCTGGTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCTC 121 |||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| | Sbjct 197 AAAGTGGTGCTGGTGATCCCTGACAACTACAGCCCCGAAAAGCAGAAACTGCTGCGCTTG 256 Query 122 TACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAAG 181 ||||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||| Sbjct 257 TACGGCGCCAAGGTGGTGCTGTCGGACAGCCGCCTCGGGAACAATTCCCACGGCGAAAAG 316 Query 182 TGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGGC 241 ||| |||||||||| |||||||||||| | |||||||||||||||||| ||||| ||| Sbjct 317 TGCATGGAACTGCAGTTGGAAAACCCCAATTTCGTGATGCTCAACCAGCAGCGCAACGGC 376 Query 242 GCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGAG 301 ||||||||||| ||||||||||||||||||||||| || ||||| ||||| || |||| Sbjct 377 GCCAACCCGCAGACCCACCGCGACACCACCGCACCGGAAATCCTCCGCGCCTTCGGTGCA 436 Query 302 CGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCACATCACCGGCATCGGC 361 | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 437 CAGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCATATCACCGGCATCGGC 496 Query 362 GAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGCGTCATGGGCGTGGAGCCGGAAGAGTGC 421 |||||||||||||| |||||||||| | |||| ||||||||||||||||||||||| ||| Sbjct 497 GAAACCCTCAAGGCGGCCTGGCCGGCGATGCGTGTCATGGGCGTGGAGCCGGAAGAATGC 556 Query 422 GACCTGCTGAAAAACCAGCACGCGCCGCACCATATCCAGGGCCTGTCG 469 |||||||| || |||||||||| |||||||||||||||||||||||| Sbjct 557 GACCTGCTCAAGGACCAGCACGCACCGCACCATATCCAGGGCCTGTCG 604 >seq124771 Length=2256 Score = 639 bits (708), Expect = 0.0 Identities = 423/469 (90%), Gaps = 0/469 (0%) Strand=Plus/Plus Query 1 CGAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTA 60 |||||||||||||||||| ||||||||||||||||||||||| ||||| || |||||||| Sbjct 273 CGAGCCCAGCGGCGGCAATACCGGCATTGGCCTGGTGATGGCCGGCAATGTACTGGGCTA 332 Query 61 CAAAGTGGTGCTGGTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCT 120 ||||||||||||||||||||| || ||||||||||||||||||||||| |||||||| | Sbjct 333 CAAAGTGGTGCTGGTGATCCCTGATAACTACAGCCCCGAAAAGCAGAAACTGCTGCGTTT 392 Query 121 CTACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAA 180 ||||||||||| ||||||||||| ||||||||||| || ||||||||| |||||||||| Sbjct 393 ATACGGCGCCAAAGTGGTGCTGTCCGACAGCCGCCTGGGCAACAATTCCCACGGCGAAAA 452 Query 181 GTGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGG 240 |||| |||||||||| |||||||||||| || |||||||||||||||||| || ||||| Sbjct 453 GTGCATGGAACTGCAGTTGGAAAACCCCAACTTCGTGATGCTCAACCAGCAGCGTAATGG 512 Query 241 CGCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGA 300 |||||||||||| || |||||||||||||||||||| || ||||| ||||| || || || Sbjct 513 CGCCAACCCGCAGACTCACCGCGACACCACCGCACCGGAAATCCTCCGCGCGTTCGGCGA 572 Query 301 GCGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCACATCACCGGCATCGG 360 || ||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| Sbjct 573 GCAGCGTGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCATATCACTGGCATCGG 632 Query 361 CGAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGCGTCATGGGCGTGGAGCCGGAAGAGTG 420 ||||||||||||||| |||||||| | | ||||||||||||| ||||| ||||| ||||| Sbjct 633 CGAAACCCTCAAGGCGGCCTGGCCCGCGATGCGCGTCATGGGTGTGGAACCGGAGGAGTG 692 Query 421 CGACCTGCTGAAAAACCAGCACGCGCCGCACCATATCCAGGGCCTGTCG 469 ||||||||| || |||||||||| |||||||| ||||||||||||||| Sbjct 693 CGACCTGCTCAAGGACCAGCACGCACCGCACCACATCCAGGGCCTGTCG 741 >seq3025007 Length=847 Score = 603 bits (668), Expect = 3e-170 Identities = 415/469 (88%), Gaps = 0/469 (0%) Strand=Plus/Plus Query 1 CGAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTA 60 ||| |||||||| ||||| |||||||| |||||||||||||| ||||| ||||| ||||| Sbjct 33 CGAACCCAGCGGTGGCAATACCGGCATCGGCCTGGTGATGGCTGGCAATGTGCTCGGCTA 92 Query 61 CAAAGTGGTGCTGGTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCT 120 |||||||||||||||||| || |||||||||||||| ||||| ||||||||||||||||| Sbjct 93 CAAAGTGGTGCTGGTGATTCCGGACAACTACAGCCCGGAAAAACAGAAGCTGCTGCGCCT 152 Query 121 CTACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAA 180 || ||||||| ||||||||| || ||||||||||| |||||||| ||| |||||||||| Sbjct 153 GTATGGCGCCAGGGTGGTGCTCTCGGACAGCCGCCTGGGTAACAACTCCCACGGCGAAAA 212 Query 181 GTGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGG 240 |||| |||| |||| ||||||| |||| ||||||||||||||||||||||||||| || Sbjct 213 GTGCATGGAGCTGCTGTTGGAAAATCCCAACTACGTGATGCTCAACCAGCAACGCAACGG 272 Query 241 CGCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGA 300 ||||||||||||||||||||||||||||||||| || || ||||| || || ||||| || Sbjct 273 CGCCAACCCGCAAACCCACCGCGACACCACCGCGCCGGAAATCCTCCGTGCCTTTGGCGA 332 Query 301 GCGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGCCACATCACCGGCATCGG 360 ||||| ||||||||||||||||||||||||||||||||||| || ||||||| ||||| Sbjct 333 ACGGCGTGTGGACTACTTCGTCAGCGGCATCGGCACCGGTGGGCATCTCACCGGGATCGG 392 Query 361 CGAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGCGTCATGGGCGTGGAGCCGGAAGAGTG 420 |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| || || Sbjct 393 CGAAACCCTCAAGGCCGCCTGGCCGGCACTGCGCGTGATGGGCGTGGAACCGGAGGAATG 452 Query 421 CGACCTGCTGAAAAACCAGCACGCGCCGCACCATATCCAGGGCCTGTCG 469 ||||||||| || ||| |||||| |||||| ||||||||||||||| Sbjct 453 CGACCTGCTCAAGGACCGGCACGCCCCGCACGCCATCCAGGGCCTGTCG 501 >seq300730 Length=466 Score = 459 bits (508), Expect = 7e-127 Identities = 304/337 (90%), Gaps = 0/337 (0%) Strand=Plus/Minus Query 1 CGAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTA 60 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||| |||| || Sbjct 337 CGAGCCCAGCGGTGGCAACACCGGCATTGGACTGGTGATGGCCGGCAACGTGTTGGGTTA 278 Query 61 CAAAGTGGTGCTGGTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCT 120 ||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||| Sbjct 277 CAAAGTGGTGCTGGTGATCCCGGACAACTACAGGCCCGAAAAGCAGAAACTGCTGCGCCT 218 Query 121 CTACGGCGCCAAGGTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAA 180 ||||| |||| |||||||||||| ||||||||||| || ||||| ||| |||||||||| Sbjct 217 GTACGGTGCCAGGGTGGTGCTGTCGGACAGCCGCCTGGGGAACAACTCCCACGGCGAAAA 158 Query 181 GTGCCTGGAACTGCAACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGG 240 |||| |||| ||||| ||||||||||||||||||||||||||||| ||||| || || || Sbjct 157 GTGCATGGAGCTGCAGCTGGAAAACCCCAGCTACGTGATGCTCAATCAGCAGCGTAACGG 98 Query 241 CGCCAACCCGCAAACCCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGA 300 |||||| |||||||||||||||||||||||||| || || ||||| ||||| || ||||| Sbjct 97 CGCCAATCCGCAAACCCACCGCGACACCACCGCCCCGGAAATCCTCCGCGCGTTCGGTGA 38 Query 301 GCGGCGCGTGGACTACTTCGTCAGCGGCATCGGCACC 337 ||||||||||| || ||||||||||||||||||||| Sbjct 37 ACGGCGCGTGGATTATTTCGTCAGCGGCATCGGCACC 1 >seq2715325 Length=202 Score = 269 bits (298), Expect = 7e-70 Identities = 181/202 (90%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 136 GGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAAGTGCCTGGAACTGCA 195 ||||||||| ||||||||||| || ||||| ||| |||||||||||||| |||| ||||| Sbjct 1 GGTGCTGTCGGACAGCCGCCTGGGGAACAACTCCCACGGCGAAAAGTGCATGGAGCTGCA 60 Query 196 ACTGGAAAACCCCAGCTACGTGATGCTCAACCAGCAACGCAATGGCGCCAACCCGCAAAC 255 || |||||||||||||||||||||||||||||||| || || |||||||| |||||||| Sbjct 61 GCTCGAAAACCCCAGCTACGTGATGCTCAACCAGCAGCGTAACGGCGCCAATCCGCAAAC 120 Query 256 CCACCGCGACACCACCGCACCCGAGATCCTGCGCGCTTTTGGTGAGCGGCGCGTGGACTA 315 ||||||||||||||||||||| || ||||| ||||| || ||||| ||||||||||| || Sbjct 121 CCACCGCGACACCACCGCACCGGAAATCCTCCGCGCGTTCGGTGAACGGCGCGTGGATTA 180 Query 316 CTTCGTCAGCGGCATCGGCACC 337 ||||||||||||||||||||| Sbjct 181 TTTCGTCAGCGGCATCGGCACC 202 >seq3038788 Length=993 Score = 257 bits (284), Expect = 5e-66 Identities = 174/195 (89%), Gaps = 0/195 (0%) Strand=Plus/Plus Query 275 CCCGAGATCCTGCGCGCTTTTGGTGAGCGGCGCGTGGACTACTTCGTCAGCGGCATCGGC 334 || || ||||| ||||| || ||||| ||||||||||| || |||||||||||||||||| Sbjct 1 CCGGAAATCCTCCGCGCGTTCGGTGAACGGCGCGTGGATTATTTCGTCAGCGGCATCGGC 60 Query 335 ACCGGTGGCCACATCACCGGCATCGGCGAAACCCTCAAGGCCGCCTGGCCGGAGCTGCGC 394 ||||| |||||| |||| |||||||||||||| || |||||||||||||| | ||||| Sbjct 61 ACCGGCGGCCACCTCACGGGCATCGGCGAAACGCTGAAGGCCGCCTGGCCTGCACTGCGG 120 Query 395 GTCATGGGCGTGGAGCCGGAAGAGTGCGACCTGCTGAAAAACCAGCACGCGCCGCACCAT 454 || ||||||||||| ||||| || |||||||||||||||||||||||||||||||||||| Sbjct 121 GTGATGGGCGTGGAACCGGAGGAATGCGACCTGCTGAAAAACCAGCACGCGCCGCACCAT 180 Query 455 ATCCAGGGCCTGTCG 469 ||||||||||||||| Sbjct 181 ATCCAGGGCCTGTCG 195 >seq2631946 Length=185 Score = 257 bits (284), Expect = 5e-66 Identities = 168/185 (91%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 14 GGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTACAAAGTGGTGCTG 73 ||||||||||||||||| ||||||||||| ||||||||| |||| ||||||||||||||| Sbjct 185 GGCAACACCGGCATTGGACTGGTGATGGCCGGCAACGTGTTGGGTTACAAAGTGGTGCTG 126 Query 74 GTGATCCCCGACAACTACAGCCCCGAAAAGCAGAAGCTGCTGCGCCTCTACGGCGCCAAG 133 |||||||| |||||||||||||||||||||||||| ||||||||||| ||||| |||| | Sbjct 125 GTGATCCCGGACAACTACAGCCCCGAAAAGCAGAAACTGCTGCGCCTGTACGGTGCCAGG 66 Query 134 GTGGTGCTGTCAGACAGCCGCCTCGGTAACAATTCCTACGGCGAAAAGTGCCTGGAACTG 193 ||||||||||| ||||||||||| || ||||| ||| |||||||||||||| |||| ||| Sbjct 65 GTGGTGCTGTCGGACAGCCGCCTGGGGAACAACTCCCACGGCGAAAAGTGCATGGAGCTG 6 Query 194 CAACT 198 || || Sbjct 5 CAGCT 1 >seq2727040 Length=205 Score = 120 bits (132), Expect = 8e-25 Identities = 72/76 (95%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 1 CGAGCCCAGCGGCGGCAACACCGGCATTGGCCTGGTGATGGCGGGCAACGTGCTGGGCTA 60 |||||||||||||||||||||||||||||| ||||||||||| ||||||||| |||| || Sbjct 76 CGAGCCCAGCGGCGGCAACACCGGCATTGGACTGGTGATGGCCGGCAACGTGTTGGGTTA 17 Query 61 CAAAGTGGTGCTGGTG 76 |||||||||||||||| Sbjct 16 CAAAGTGGTGCTGGTG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1355210262176