Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001997.1 Length=304 Score E Sequences producing significant alignments: (Bits) Value seq2986870 372 5e-101 seq2924901 311 1e-82 seq332951 250 4e-64 seq2306148 168 1e-39 seq2770153 159 6e-37 seq1140687 156 7e-36 seq291262 145 1e-32 seq751161 143 4e-32 seq2709953 104 4e-20 >seq2986870 Length=590 Score = 372 bits (412), Expect = 5e-101 Identities = 268/304 (88%), Gaps = 4/304 (1%) Strand=Plus/Minus Query 1 CCGCATCGTCAAACGCAGGGAACTTCGCCAGCTTCCATTCGGTTCCCCGAGTTTCttttt 60 ||||||||||||| ||||||||||| ||||||| ||||| |||| ||||||||| |||| Sbjct 478 CCGCATCGTCAAATGCAGGGAACTT-GCCAGCT-CCATT-GGTTACCCGAGTTTAATTTT 422 Query 61 ttttCGCAAGCGGGCCAATCGTTGGCCACGCGACAGGGCATTCAAGCAGTTGAAATTAGA 120 ||| |||||||||||||||||||| ||||| |||| ||||||||||||| || ||||||| Sbjct 421 TTT-CGCAAGCGGGCCAATCGTTGACCACGAGACAAGGCATTCAAGCAGATGGAATTAGA 363 Query 121 AAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGACCGACTCACT 180 |||||| ||||||| ||||||| || |||||||||||||||||||||||||| ||| Sbjct 362 AAATGCCCTCTAAAGAGCAAGAAGCCTGGACTAGAGCATCAGCCGCACGACCGACTGACT 303 Query 181 CGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTC 240 ||||||||||||||| || || ||||| |||||||||||||| |||||||||| ||||| Sbjct 302 CGGATCGCGGGTTTTTCCGGCAGCTTTCAGCTCGGCCAGGTAATCGGCCCACAGCGCGTC 243 Query 241 CTGACGTACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTC 300 |||||| ||||||| ||||| ||||||||||||||||||| |||||||||||| ||||| Sbjct 242 CTGACGCACGGCCAGTTGATAAAGGTAGTCCCAGGTGAACAATCCGCTGTCATGGCCGTC 183 Query 301 GTCG 304 ||| Sbjct 182 ATCG 179 >seq2924901 Length=379 Score = 311 bits (344), Expect = 1e-82 Identities = 208/232 (90%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 73 GGCCAATCGTTGGCCACGCGACAGGGCATTCAAGCAGTTGAAATTAGAAAATGCGCTCTA 132 |||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||| Sbjct 1 GGCCAATCGTTGACCACGCGACAGGGCATTCAAGCAGATGAAATTAGAAAATGCCCTCTA 60 Query 133 AACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGACCGACTCACTCGGATCGCGGGT 192 || ||||||| |||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 61 AAGCGCAAGACGCCTGAGTTAGAGCATCAGCCGCACGACCGACTCACTCGGGTCGCGGGT 120 Query 193 TTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTCCTGACGTACGGC 252 ||| || ||||||||||| ||||| |||||||||||||||| | ||||| || ||||| Sbjct 121 TTTGCCGGCGGCTTTGAGTTCGGCGAGGTAGTCGGCCCACAGGTCTTCCTGGCGCACGGC 180 Query 253 CAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTCGTCG 304 ||| || ||||||||||||||||||||||||||||||||||| ||||| ||| Sbjct 181 CAATTGGTAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGGCCGTCATCG 232 >seq332951 Length=1725 Score = 250 bits (276), Expect = 4e-64 Identities = 171/193 (89%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 112 GAAATTAGAAAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGAC 171 ||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||| Sbjct 1725 GAAATTAGAAAATGCCCTCTAAAGAGCAAGACGCCTGAGTTAGAGCATCAGCCGCACGAC 1666 Query 172 CGACTCACTCGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCA 231 ||| |||||||| ||||||||||| || |||||||| ||||| ||||| || |||||||| Sbjct 1665 CGATTCACTCGGGTCGCGGGTTTTGCCGGCGGCTTTAAGCTCAGCCAGATAATCGGCCCA 1606 Query 232 CAAAGCGTCCTGACGTACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTC 291 ||| || ||||| || ||||||| ||| ||||||||||||||||||||||| |||||||| Sbjct 1605 CAACGCATCCTGGCGCACGGCCAGCTGGTAGAGGTAGTCCCAGGTGAACAGACCGCTGTC 1546 Query 292 ATGACCGTCGTCG 304 ||| ||||||||| Sbjct 1545 ATGGCCGTCGTCG 1533 >seq2306148 Length=138 Score = 168 bits (186), Expect = 1e-39 Identities = 120/138 (87%), Gaps = 0/138 (0%) Strand=Plus/Plus Query 112 GAAATTAGAAAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGAC 171 ||||||||||||||| ||||||| |||||||| |||| |||||||||||||||||||| Sbjct 1 GAAATTAGAAAATGCCCTCTAAAGAGCAAGACGCCTGAGTTAGAGCATCAGCCGCACGAC 60 Query 172 CGACTCACTCGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCA 231 |||||| ||||| |||||||||||||| || ||||||||||| || || ||||||||||| Sbjct 61 CGACTCGCTCGGGTCGCGGGTTTTACCGGCTGCTTTGAGCTCAGCAAGATAGTCGGCCCA 120 Query 232 CAAAGCGTCCTGACGTAC 249 || || ||||| || || Sbjct 121 CAGGGCTTCCTGGCGCAC 138 >seq2770153 Length=221 Score = 159 bits (176), Expect = 6e-37 Identities = 106/118 (90%), Gaps = 0/118 (0%) Strand=Plus/Plus Query 187 GCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTCCTGACG 246 |||||||||||| || ||||||||||| || || ||||||||||||| || ||||| || Sbjct 1 GCGGGTTTTACCGGCTGCTTTGAGCTCAGCAAGATAGTCGGCCCACAGGGCTTCCTGGCG 60 Query 247 TACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTCGTCG 304 ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 61 CACGGCCAACTGGTAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGGCCGTCGTCG 118 >seq1140687 Length=117 Score = 156 bits (172), Expect = 7e-36 Identities = 107/117 (91%), Gaps = 3/117 (3%) Strand=Plus/Plus Query 27 GCCAGCTTCCATTCGGTTCCCCGAGTTTCtttttttttCGCAAGCGGGCCAATCGTTGGC 86 ||||| ||||||| |||| ||||||||| ||||||| |||||||||||||||||||| | Sbjct 3 GCCAG-TTCCATT-GGTTACCCGAGTTTAATTTTTTT-CGCAAGCGGGCCAATCGTTGAC 59 Query 87 CACGCGACAGGGCATTCAAGCAGTTGAAATTAGAAAATGCGCTCTAAACAGCAAGAC 143 ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| Sbjct 60 CACGCGACAGGGCATTCAAGCAGATGAAATTAGAAAATGCCCTCTAAAGAGCAAGAC 116 >seq291262 Length=374 Score = 145 bits (160), Expect = 1e-32 Identities = 103/118 (87%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 187 GCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTCCTGACG 246 |||||||||||| || ||||||||||| || || ||||||||||||| || ||||| || Sbjct 374 GCGGGTTTTACCGGCTGCTTTGAGCTCAGCAAGATAGTCGGCCCACAGGGCTTCCTGGCG 315 Query 247 TACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTCGTCG 304 || |||||||| |||||||| |||||||||||||| ||||||||||| ||||||||| Sbjct 314 CACAGCCAACTGGTAGAGGTAATCCCAGGTGAACAGGCCGCTGTCATGGCCGTCGTCG 257 >seq751161 Length=108 Score = 143 bits (158), Expect = 4e-32 Identities = 99/108 (92%), Gaps = 3/108 (3%) Strand=Plus/Minus Query 27 GCCAGCTTCCATTCGGTTCCCCGAGTTTCtttttttttCGCAAGCGGGCCAATCGTTGGC 86 ||||| ||||||| |||| ||||||||| ||||||| |||||||||||||||||||| | Sbjct 106 GCCAG-TTCCATT-GGTTACCCGAGTTTAATTTTTTT-CGCAAGCGGGCCAATCGTTGAC 50 Query 87 CACGCGACAGGGCATTCAAGCAGTTGAAATTAGAAAATGCGCTCTAAA 134 ||||||||||||||||||||||| |||||||||||||||| ||||||| Sbjct 49 CACGCGACAGGGCATTCAAGCAGATGAAATTAGAAAATGCCCTCTAAA 2 >seq2709953 Length=200 Score = 104 bits (114), Expect = 4e-20 Identities = 80/90 (89%), Gaps = 4/90 (4%) Strand=Plus/Plus Query 1 CCGCATCGTCAAACGCAGGGAACTTCGCCAGCTTCCATTCGGTTCCCCGAGTTTCttttt 60 ||||||||||||| ||||||||||| ||||| ||||||| |||| ||||||||| |||| Sbjct 115 CCGCATCGTCAAATGCAGGGAACTT-GCCAG-TTCCATT-GGTTACCCGAGTTTAATTTT 171 Query 61 ttttCGCAAGCGGGCCAATCGTTGGCCACG 90 ||| |||||||||||||||| ||| ||||| Sbjct 172 TTT-CGCAAGCGGGCCAATCATTGACCACG 200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 843517600256