Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001997.1
Length=304
Score E
Sequences producing significant alignments: (Bits) Value
seq2986870 372 5e-101
seq2924901 311 1e-82
seq332951 250 4e-64
seq2306148 168 1e-39
seq2770153 159 6e-37
seq1140687 156 7e-36
seq291262 145 1e-32
seq751161 143 4e-32
seq2709953 104 4e-20
>seq2986870
Length=590
Score = 372 bits (412), Expect = 5e-101
Identities = 268/304 (88%), Gaps = 4/304 (1%)
Strand=Plus/Minus
Query 1 CCGCATCGTCAAACGCAGGGAACTTCGCCAGCTTCCATTCGGTTCCCCGAGTTTCttttt 60
||||||||||||| ||||||||||| ||||||| ||||| |||| ||||||||| ||||
Sbjct 478 CCGCATCGTCAAATGCAGGGAACTT-GCCAGCT-CCATT-GGTTACCCGAGTTTAATTTT 422
Query 61 ttttCGCAAGCGGGCCAATCGTTGGCCACGCGACAGGGCATTCAAGCAGTTGAAATTAGA 120
||| |||||||||||||||||||| ||||| |||| ||||||||||||| || |||||||
Sbjct 421 TTT-CGCAAGCGGGCCAATCGTTGACCACGAGACAAGGCATTCAAGCAGATGGAATTAGA 363
Query 121 AAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGACCGACTCACT 180
|||||| ||||||| ||||||| || |||||||||||||||||||||||||| |||
Sbjct 362 AAATGCCCTCTAAAGAGCAAGAAGCCTGGACTAGAGCATCAGCCGCACGACCGACTGACT 303
Query 181 CGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTC 240
||||||||||||||| || || ||||| |||||||||||||| |||||||||| |||||
Sbjct 302 CGGATCGCGGGTTTTTCCGGCAGCTTTCAGCTCGGCCAGGTAATCGGCCCACAGCGCGTC 243
Query 241 CTGACGTACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTC 300
|||||| ||||||| ||||| ||||||||||||||||||| |||||||||||| |||||
Sbjct 242 CTGACGCACGGCCAGTTGATAAAGGTAGTCCCAGGTGAACAATCCGCTGTCATGGCCGTC 183
Query 301 GTCG 304
|||
Sbjct 182 ATCG 179
>seq2924901
Length=379
Score = 311 bits (344), Expect = 1e-82
Identities = 208/232 (90%), Gaps = 0/232 (0%)
Strand=Plus/Plus
Query 73 GGCCAATCGTTGGCCACGCGACAGGGCATTCAAGCAGTTGAAATTAGAAAATGCGCTCTA 132
|||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||
Sbjct 1 GGCCAATCGTTGACCACGCGACAGGGCATTCAAGCAGATGAAATTAGAAAATGCCCTCTA 60
Query 133 AACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGACCGACTCACTCGGATCGCGGGT 192
|| ||||||| |||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 61 AAGCGCAAGACGCCTGAGTTAGAGCATCAGCCGCACGACCGACTCACTCGGGTCGCGGGT 120
Query 193 TTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTCCTGACGTACGGC 252
||| || ||||||||||| ||||| |||||||||||||||| | ||||| || |||||
Sbjct 121 TTTGCCGGCGGCTTTGAGTTCGGCGAGGTAGTCGGCCCACAGGTCTTCCTGGCGCACGGC 180
Query 253 CAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTCGTCG 304
||| || ||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 181 CAATTGGTAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGGCCGTCATCG 232
>seq332951
Length=1725
Score = 250 bits (276), Expect = 4e-64
Identities = 171/193 (89%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 112 GAAATTAGAAAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGAC 171
||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 1725 GAAATTAGAAAATGCCCTCTAAAGAGCAAGACGCCTGAGTTAGAGCATCAGCCGCACGAC 1666
Query 172 CGACTCACTCGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCA 231
||| |||||||| ||||||||||| || |||||||| ||||| ||||| || ||||||||
Sbjct 1665 CGATTCACTCGGGTCGCGGGTTTTGCCGGCGGCTTTAAGCTCAGCCAGATAATCGGCCCA 1606
Query 232 CAAAGCGTCCTGACGTACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTC 291
||| || ||||| || ||||||| ||| ||||||||||||||||||||||| ||||||||
Sbjct 1605 CAACGCATCCTGGCGCACGGCCAGCTGGTAGAGGTAGTCCCAGGTGAACAGACCGCTGTC 1546
Query 292 ATGACCGTCGTCG 304
||| |||||||||
Sbjct 1545 ATGGCCGTCGTCG 1533
>seq2306148
Length=138
Score = 168 bits (186), Expect = 1e-39
Identities = 120/138 (87%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 112 GAAATTAGAAAATGCGCTCTAAACAGCAAGACCGTTGAGCTAGAGCATCAGCCGCACGAC 171
||||||||||||||| ||||||| |||||||| |||| ||||||||||||||||||||
Sbjct 1 GAAATTAGAAAATGCCCTCTAAAGAGCAAGACGCCTGAGTTAGAGCATCAGCCGCACGAC 60
Query 172 CGACTCACTCGGATCGCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCA 231
|||||| ||||| |||||||||||||| || ||||||||||| || || |||||||||||
Sbjct 61 CGACTCGCTCGGGTCGCGGGTTTTACCGGCTGCTTTGAGCTCAGCAAGATAGTCGGCCCA 120
Query 232 CAAAGCGTCCTGACGTAC 249
|| || ||||| || ||
Sbjct 121 CAGGGCTTCCTGGCGCAC 138
>seq2770153
Length=221
Score = 159 bits (176), Expect = 6e-37
Identities = 106/118 (90%), Gaps = 0/118 (0%)
Strand=Plus/Plus
Query 187 GCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTCCTGACG 246
|||||||||||| || ||||||||||| || || ||||||||||||| || ||||| ||
Sbjct 1 GCGGGTTTTACCGGCTGCTTTGAGCTCAGCAAGATAGTCGGCCCACAGGGCTTCCTGGCG 60
Query 247 TACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTCGTCG 304
||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CACGGCCAACTGGTAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGGCCGTCGTCG 118
>seq1140687
Length=117
Score = 156 bits (172), Expect = 7e-36
Identities = 107/117 (91%), Gaps = 3/117 (3%)
Strand=Plus/Plus
Query 27 GCCAGCTTCCATTCGGTTCCCCGAGTTTCtttttttttCGCAAGCGGGCCAATCGTTGGC 86
||||| ||||||| |||| ||||||||| ||||||| |||||||||||||||||||| |
Sbjct 3 GCCAG-TTCCATT-GGTTACCCGAGTTTAATTTTTTT-CGCAAGCGGGCCAATCGTTGAC 59
Query 87 CACGCGACAGGGCATTCAAGCAGTTGAAATTAGAAAATGCGCTCTAAACAGCAAGAC 143
||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct 60 CACGCGACAGGGCATTCAAGCAGATGAAATTAGAAAATGCCCTCTAAAGAGCAAGAC 116
>seq291262
Length=374
Score = 145 bits (160), Expect = 1e-32
Identities = 103/118 (87%), Gaps = 0/118 (0%)
Strand=Plus/Minus
Query 187 GCGGGTTTTACCAGCGGCTTTGAGCTCGGCCAGGTAGTCGGCCCACAAAGCGTCCTGACG 246
|||||||||||| || ||||||||||| || || ||||||||||||| || ||||| ||
Sbjct 374 GCGGGTTTTACCGGCTGCTTTGAGCTCAGCAAGATAGTCGGCCCACAGGGCTTCCTGGCG 315
Query 247 TACGGCCAACTGATAGAGGTAGTCCCAGGTGAACAGTCCGCTGTCATGACCGTCGTCG 304
|| |||||||| |||||||| |||||||||||||| ||||||||||| |||||||||
Sbjct 314 CACAGCCAACTGGTAGAGGTAATCCCAGGTGAACAGGCCGCTGTCATGGCCGTCGTCG 257
>seq751161
Length=108
Score = 143 bits (158), Expect = 4e-32
Identities = 99/108 (92%), Gaps = 3/108 (3%)
Strand=Plus/Minus
Query 27 GCCAGCTTCCATTCGGTTCCCCGAGTTTCtttttttttCGCAAGCGGGCCAATCGTTGGC 86
||||| ||||||| |||| ||||||||| ||||||| |||||||||||||||||||| |
Sbjct 106 GCCAG-TTCCATT-GGTTACCCGAGTTTAATTTTTTT-CGCAAGCGGGCCAATCGTTGAC 50
Query 87 CACGCGACAGGGCATTCAAGCAGTTGAAATTAGAAAATGCGCTCTAAA 134
||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 49 CACGCGACAGGGCATTCAAGCAGATGAAATTAGAAAATGCCCTCTAAA 2
>seq2709953
Length=200
Score = 104 bits (114), Expect = 4e-20
Identities = 80/90 (89%), Gaps = 4/90 (4%)
Strand=Plus/Plus
Query 1 CCGCATCGTCAAACGCAGGGAACTTCGCCAGCTTCCATTCGGTTCCCCGAGTTTCttttt 60
||||||||||||| ||||||||||| ||||| ||||||| |||| ||||||||| ||||
Sbjct 115 CCGCATCGTCAAATGCAGGGAACTT-GCCAG-TTCCATT-GGTTACCCGAGTTTAATTTT 171
Query 61 ttttCGCAAGCGGGCCAATCGTTGGCCACG 90
||| |||||||||||||||| ||| |||||
Sbjct 172 TTT-CGCAAGCGGGCCAATCATTGACCACG 200
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 843517600256
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |