Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01001999.1
Length=541
Score E
Sequences producing significant alignments: (Bits) Value
seq3071740 275 2e-71
seq334794 275 2e-71
seq296524 266 1e-68
seq3088217 196 2e-47
seq2981289 188 2e-45
seq2996076 187 8e-45
seq2854745 168 2e-39
>seq3071740
Length=1670
Score = 275 bits (304), Expect = 2e-71
Identities = 218/260 (84%), Gaps = 4/260 (2%)
Strand=Plus/Minus
Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTG--GGCATTACTGCC 339
|||||| |||||||||| ||| || ||| || || |||||| ||||| || |||
Sbjct 409 CGCCAGCTCCTGCCACAAGGCCTTGACCTCCTCGTCG--CTGCTTTTAGGCATCACGGCC 352
Query 340 TTGAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTG 399
|||||||| | | ||||| |||| |||| ||| |||||||||||||| ||||| ||||||
Sbjct 351 TTGAGCTGCACGAACAGGTAACCGCGCTGCCCGGCCTTGTTCAGCAACCCATGCCCCTTG 292
Query 400 GCGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTC 459
|| |||||||||||||| |||||||| ||||| ||||||||||||||||||||||||||
Sbjct 291 GCACGCATGCGCTGGCCATTCTGGCTACCGGCGGGCACCTTGAGGTTGATCTTGCCGGTG 232
Query 460 AGGGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTG 519
|||||||||||||||||||| |||||||| |||| |||||| || ||||| |||| | ||
Sbjct 231 AGGGTCGGCACGGCCACTTCCGCGCCCAGTGCCAATTCCCATGGCGCCAGGGGCAGGTTG 172
Query 520 ATCACCAGGTTGTCGCCTTC 539
|| | |||||| ||||| ||
Sbjct 171 ATGATCAGGTTTTCGCCGTC 152
>seq334794
Length=3015
Score = 275 bits (304), Expect = 2e-71
Identities = 218/259 (84%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTG-GGCATTACTGCCT 340
||||| |||||||||| || || ||||||||| || | || ||||| || ||||
Sbjct 2067 CGCCAACGCCTGCCACAGCGCCTTGACCTCGTCATC-GCTGGTTTTCGGCATCACCGCCT 2125
Query 341 TGAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGG 400
|||| || | | |||| | || |||| ||| ||||| ||||||||||||||||||||||
Sbjct 2126 TGAGTTGCACGAACAGATAGCCGCGCTGCCCGGCCTTATTCAGCAAGCCATGGCCCTTGG 2185
Query 401 CGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTCA 460
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 2186 CGCGCATGCGCTGGCCGTTCTGGCTGCCGGCGGGCACCTTGAGGTTGATCTTGCCGGTGA 2245
Query 461 GGGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTGA 520
||||||||||||| ||||| ||||||| |||| ||||||||||||||| |||||| |||
Sbjct 2246 GGGTCGGCACGGCGACTTCCGCGCCCAAGGCCAATTCCCACGGTGCCAGCGGCAAGTTGA 2305
Query 521 TCACCAGGTTGTCGCCTTC 539
| | |||||| || || ||
Sbjct 2306 TGATCAGGTTTTCACCATC 2324
>seq296524
Length=1881
Score = 266 bits (294), Expect = 1e-68
Identities = 216/259 (83%), Gaps = 2/259 (1%)
Strand=Plus/Plus
Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTG-GGCATTACTGCCT 340
|||||| |||||||||| || || || || || || | || ||||| || ||||
Sbjct 1268 CGCCAGCTCCTGCCACAACGCCTTGACTTCATCGTC-GCTGGTTTTCGGCATCACGGCCT 1326
Query 341 TGAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGG 400
||||||| | | ||||| |||| |||| ||| ||||||||||||| |||||| || ||||
Sbjct 1327 TGAGCTGCACGAACAGGTAACCGCGCTGCCCGGCCTTGTTCAGCAGGCCATGACCTTTGG 1386
Query 401 CGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTCA 460
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1387 CGCGCATGCGTTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTGA 1446
Query 461 GGGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTGA 520
||||||||||||||||||| ||||||| |||| |||||| || ||||| |||| | |||
Sbjct 1447 GGGTCGGCACGGCCACTTCTGCGCCCAAGGCCAATTCCCATGGCGCCAGGGGCAGGTTGA 1506
Query 521 TCACCAGGTTGTCGCCTTC 539
| | |||||| ||||| ||
Sbjct 1507 TGATCAGGTTTTCGCCGTC 1525
>seq3088217
Length=8129
Score = 196 bits (216), Expect = 2e-47
Identities = 131/146 (90%), Gaps = 0/146 (0%)
Strand=Plus/Minus
Query 396 CTTGGCGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCC 455
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 8129 CTTGGCGCGCATGCGTTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCC 8070
Query 456 GGTCAGGGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAA 515
||| ||||||||||| || ||||| | |||||||||||| |||||||| ||||| ||||
Sbjct 8069 GGTAAGGGTCGGCACTGCGACTTCCGTGCCCAGCGCCAGCTCCCACGGGGCCAGCGGCAG 8010
Query 516 GGTGATCACCAGGTTGTCGCCTTCGA 541
| |||| | |||||| ||||| ||||
Sbjct 8009 GTTGATGATCAGGTTTTCGCCATCGA 7984
>seq2981289
Length=564
Score = 188 bits (208), Expect = 2e-45
Identities = 143/169 (85%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTGGGCATTACTGCCTT 341
|||||| | ||||||| || || ||| || || ||| ||||||||| || || ||
Sbjct 169 CGCCAGGGCTTGCCACAACGCCTTGACCTCATCGTCTGCCGCCTTGGGCATCACGGCTTT 110
Query 342 GAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGGC 401
|||||||||| |||| ||||| || || || |||||||||| ||| ||||||||||||||
Sbjct 109 GAGCTGGATGAACAGAAAACCGCGTTCACCGGCCTTGTTCAACAAACCATGGCCCTTGGC 50
Query 402 GCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATC 450
||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 49 GCGCATGCGTTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATC 1
>seq2996076
Length=640
Score = 187 bits (206), Expect = 8e-45
Identities = 145/170 (85%), Gaps = 2/170 (1%)
Strand=Plus/Plus
Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTG-GGCATTACTGCCT 340
|||||| |||||||||| || || ||| || || || | || ||||| |||||||
Sbjct 472 CGCCAGCTCCTGCCACAACGCCTTGACCTCATCGTC-GCTGGTTTTCGGCATCACTGCCT 530
Query 341 TGAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGG 400
||||||| | | ||||| |||| |||| ||| ||||||||||||| ||||||||||||||
Sbjct 531 TGAGCTGCACGAACAGGTAACCGCGCTGCCCGGCCTTGTTCAGCAGGCCATGGCCCTTGG 590
Query 401 CGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATC 450
|||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 591 CGCGCATGCGTTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATC 640
>seq2854745
Length=274
Score = 168 bits (186), Expect = 2e-39
Identities = 111/123 (90%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 417 GTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTCAGGGTCGGCACGGCCAC 476
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1 GTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTGAGGGTCGGCACGGCCAC 60
Query 477 TTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTGATCACCAGGTTGTCGCC 536
||| | ||||| ||||| ||||||||| ||||| |||||| |||| | |||||| |||||
Sbjct 61 TTCCGTGCCCAACGCCAATTCCCACGGCGCCAGGGGCAAGTTGATGATCAGGTTTTCGCC 120
Query 537 TTC 539
||
Sbjct 121 GTC 123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1578494332832
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