Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01001999.1 Length=541 Score E Sequences producing significant alignments: (Bits) Value seq3071740 275 2e-71 seq334794 275 2e-71 seq296524 266 1e-68 seq3088217 196 2e-47 seq2981289 188 2e-45 seq2996076 187 8e-45 seq2854745 168 2e-39 >seq3071740 Length=1670 Score = 275 bits (304), Expect = 2e-71 Identities = 218/260 (84%), Gaps = 4/260 (2%) Strand=Plus/Minus Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTG--GGCATTACTGCC 339 |||||| |||||||||| ||| || ||| || || |||||| ||||| || ||| Sbjct 409 CGCCAGCTCCTGCCACAAGGCCTTGACCTCCTCGTCG--CTGCTTTTAGGCATCACGGCC 352 Query 340 TTGAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTG 399 |||||||| | | ||||| |||| |||| ||| |||||||||||||| ||||| |||||| Sbjct 351 TTGAGCTGCACGAACAGGTAACCGCGCTGCCCGGCCTTGTTCAGCAACCCATGCCCCTTG 292 Query 400 GCGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTC 459 || |||||||||||||| |||||||| ||||| |||||||||||||||||||||||||| Sbjct 291 GCACGCATGCGCTGGCCATTCTGGCTACCGGCGGGCACCTTGAGGTTGATCTTGCCGGTG 232 Query 460 AGGGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTG 519 |||||||||||||||||||| |||||||| |||| |||||| || ||||| |||| | || Sbjct 231 AGGGTCGGCACGGCCACTTCCGCGCCCAGTGCCAATTCCCATGGCGCCAGGGGCAGGTTG 172 Query 520 ATCACCAGGTTGTCGCCTTC 539 || | |||||| ||||| || Sbjct 171 ATGATCAGGTTTTCGCCGTC 152 >seq334794 Length=3015 Score = 275 bits (304), Expect = 2e-71 Identities = 218/259 (84%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTG-GGCATTACTGCCT 340 ||||| |||||||||| || || ||||||||| || | || ||||| || |||| Sbjct 2067 CGCCAACGCCTGCCACAGCGCCTTGACCTCGTCATC-GCTGGTTTTCGGCATCACCGCCT 2125 Query 341 TGAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGG 400 |||| || | | |||| | || |||| ||| ||||| |||||||||||||||||||||| Sbjct 2126 TGAGTTGCACGAACAGATAGCCGCGCTGCCCGGCCTTATTCAGCAAGCCATGGCCCTTGG 2185 Query 401 CGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTCA 460 ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | Sbjct 2186 CGCGCATGCGCTGGCCGTTCTGGCTGCCGGCGGGCACCTTGAGGTTGATCTTGCCGGTGA 2245 Query 461 GGGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTGA 520 ||||||||||||| ||||| ||||||| |||| ||||||||||||||| |||||| ||| Sbjct 2246 GGGTCGGCACGGCGACTTCCGCGCCCAAGGCCAATTCCCACGGTGCCAGCGGCAAGTTGA 2305 Query 521 TCACCAGGTTGTCGCCTTC 539 | | |||||| || || || Sbjct 2306 TGATCAGGTTTTCACCATC 2324 >seq296524 Length=1881 Score = 266 bits (294), Expect = 1e-68 Identities = 216/259 (83%), Gaps = 2/259 (1%) Strand=Plus/Plus Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTG-GGCATTACTGCCT 340 |||||| |||||||||| || || || || || || | || ||||| || |||| Sbjct 1268 CGCCAGCTCCTGCCACAACGCCTTGACTTCATCGTC-GCTGGTTTTCGGCATCACGGCCT 1326 Query 341 TGAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGG 400 ||||||| | | ||||| |||| |||| ||| ||||||||||||| |||||| || |||| Sbjct 1327 TGAGCTGCACGAACAGGTAACCGCGCTGCCCGGCCTTGTTCAGCAGGCCATGACCTTTGG 1386 Query 401 CGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTCA 460 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1387 CGCGCATGCGTTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTGA 1446 Query 461 GGGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTGA 520 ||||||||||||||||||| ||||||| |||| |||||| || ||||| |||| | ||| Sbjct 1447 GGGTCGGCACGGCCACTTCTGCGCCCAAGGCCAATTCCCATGGCGCCAGGGGCAGGTTGA 1506 Query 521 TCACCAGGTTGTCGCCTTC 539 | | |||||| ||||| || Sbjct 1507 TGATCAGGTTTTCGCCGTC 1525 >seq3088217 Length=8129 Score = 196 bits (216), Expect = 2e-47 Identities = 131/146 (90%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 396 CTTGGCGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCC 455 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 8129 CTTGGCGCGCATGCGTTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCC 8070 Query 456 GGTCAGGGTCGGCACGGCCACTTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAA 515 ||| ||||||||||| || ||||| | |||||||||||| |||||||| ||||| |||| Sbjct 8069 GGTAAGGGTCGGCACTGCGACTTCCGTGCCCAGCGCCAGCTCCCACGGGGCCAGCGGCAG 8010 Query 516 GGTGATCACCAGGTTGTCGCCTTCGA 541 | |||| | |||||| ||||| |||| Sbjct 8009 GTTGATGATCAGGTTTTCGCCATCGA 7984 >seq2981289 Length=564 Score = 188 bits (208), Expect = 2e-45 Identities = 143/169 (85%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTGGGCATTACTGCCTT 341 |||||| | ||||||| || || ||| || || ||| ||||||||| || || || Sbjct 169 CGCCAGGGCTTGCCACAACGCCTTGACCTCATCGTCTGCCGCCTTGGGCATCACGGCTTT 110 Query 342 GAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGGC 401 |||||||||| |||| ||||| || || || |||||||||| ||| |||||||||||||| Sbjct 109 GAGCTGGATGAACAGAAAACCGCGTTCACCGGCCTTGTTCAACAAACCATGGCCCTTGGC 50 Query 402 GCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATC 450 ||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 49 GCGCATGCGTTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATC 1 >seq2996076 Length=640 Score = 187 bits (206), Expect = 8e-45 Identities = 145/170 (85%), Gaps = 2/170 (1%) Strand=Plus/Plus Query 282 CGCCAGTTCCTGCCACAGGGCGATGGTCTCGTCATCCGCCTGCTTG-GGCATTACTGCCT 340 |||||| |||||||||| || || ||| || || || | || ||||| ||||||| Sbjct 472 CGCCAGCTCCTGCCACAACGCCTTGACCTCATCGTC-GCTGGTTTTCGGCATCACTGCCT 530 Query 341 TGAGCTGGATGTACAGGAAACCTCGCTCCCCAGCCTTGTTCAGCAAGCCATGGCCCTTGG 400 ||||||| | | ||||| |||| |||| ||| ||||||||||||| |||||||||||||| Sbjct 531 TGAGCTGCACGAACAGGTAACCGCGCTGCCCGGCCTTGTTCAGCAGGCCATGGCCCTTGG 590 Query 401 CGCGCATGCGCTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATC 450 |||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 591 CGCGCATGCGTTGGCCGTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATC 640 >seq2854745 Length=274 Score = 168 bits (186), Expect = 2e-39 Identities = 111/123 (90%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 417 GTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTCAGGGTCGGCACGGCCAC 476 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 1 GTTCTGGCTGCCGGCCGGCACCTTGAGGTTGATCTTGCCGGTGAGGGTCGGCACGGCCAC 60 Query 477 TTCGGCGCCCAGCGCCAGTTCCCACGGTGCCAGTGGCAAGGTGATCACCAGGTTGTCGCC 536 ||| | ||||| ||||| ||||||||| ||||| |||||| |||| | |||||| ||||| Sbjct 61 TTCCGTGCCCAACGCCAATTCCCACGGCGCCAGGGGCAAGTTGATGATCAGGTTTTCGCC 120 Query 537 TTC 539 || Sbjct 121 GTC 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1578494332832