Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002002.1
Length=198
Score E
Sequences producing significant alignments: (Bits) Value
seq331504 273 2e-71
seq3082825 239 5e-61
seq238816 221 1e-55
seq2464348 199 4e-49
seq2504358 196 5e-48
seq2973442 176 5e-42
seq2456210 132 5e-29
>seq331504
Length=1475
Score = 273 bits (302), Expect = 2e-71
Identities = 165/173 (95%), Gaps = 1/173 (1%)
Strand=Plus/Plus
Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 489 TGCTGACCAACATCGCCGGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGTTT-GACC 547
Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 548 ACTCAACAAGTGGACGACCTGATCGCCGATGGCACCATCTACGGCGGCATGCTGCCGAAG 607
Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 173
||||||||||| |||||||| |||||||||||||||||||| |||||||||||
Sbjct 608 ATCCGTTGCGCGCTGGAAGCCGTGCAAGGCGGCGTGGGCAGTTCGCTGATCCT 660
>seq3082825
Length=2588
Score = 239 bits (264), Expect = 5e-61
Identities = 158/174 (91%), Gaps = 1/174 (1%)
Strand=Plus/Plus
Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60
||||||||||||||||| |||||||||||||||||||||| || | |||||| | |||
Sbjct 231 TGCTGACCAACATCGCCGGCCTGATGGACAAGGAAGGCAAAGTACTCACCGGCCT-GACT 289
Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120
||||||||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 290 ACGCAACAAGTCGACGAGCTGATCGCCGATGGCACCATCTATGGCGGCATGCTGCCGAAG 349
Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCTC 174
||||| ||||| |||||||| |||||||||||||| ||||||||||||||||||
Sbjct 350 ATCCGCTGCGCGCTGGAAGCGGTGCAAGGCGGCGTCGGCAGCTCGCTGATCCTC 403
>seq238816
Length=1242
Score = 221 bits (244), Expect = 1e-55
Identities = 157/180 (87%), Gaps = 8/180 (4%)
Strand=Plus/Minus
Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60
||||||||||||| ||| |||||||||||||||||||||||||| |||| || || ||||
Sbjct 805 TGCTGACCAACATTGCCGGCCTGATGGACAAGGAAGGCAAGGTGCTGACGGGTTT-GACC 747
Query 61 ACGCAACAAGTGGACGACCT-------GATCGCCGACGGCACCATCTACGGCGGCATGCT 113
|| || || |||||||| | |||||||||||||||||||||||||||||||||
Sbjct 746 ACCCAGCAGGTGGACGAGCNNNNNNNNGATCGCCGACGGCACCATCTACGGCGGCATGCT 687
Query 114 GCCGAAGATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 173
|||||||||||||||||| |||||||| || |||||||||||||| ||||||||||| ||
Sbjct 686 GCCGAAGATCCGTTGCGCGCTGGAAGCCGTACAAGGCGGCGTGGGTAGCTCGCTGATTCT 627
>seq2464348
Length=162
Score = 199 bits (220), Expect = 4e-49
Identities = 129/140 (92%), Gaps = 1/140 (1%)
Strand=Plus/Plus
Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60
||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||| ||||
Sbjct 22 TGCTGACCAACATTGCCGGCCTGATGGACAAGGAAGGCAAGGTGCTGACGGGCTT-GACC 80
Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120
|| || || |||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 81 ACCCAGCAGGTGGACGAGTTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 140
Query 121 ATCCGTTGCGCACTGGAAGC 140
||||||||||| ||||||||
Sbjct 141 ATCCGTTGCGCGCTGGAAGC 160
>seq2504358
Length=167
Score = 196 bits (216), Expect = 5e-48
Identities = 119/125 (95%), Gaps = 1/125 (1%)
Strand=Plus/Plus
Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60
||||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||
Sbjct 44 TGCTGACCAACATCGCCGGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGTTT-GACC 102
Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120
|| |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct 103 ACTCAACAAGTGGACGAACTGATCGCCGATGGCACCATCTACGGCGGCATGCTGCCGAAG 162
Query 121 ATCCG 125
|||||
Sbjct 163 ATCCG 167
>seq2973442
Length=529
Score = 176 bits (194), Expect = 5e-42
Identities = 105/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 64 CAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAGATC 123
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 2 CAACAAGTGGACGAACTGATCGCCGATGGCACCATCTACGGCGGCATGCTGCCGAAGATC 61
Query 124 CGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 173
|| ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 62 CGCTGCGCGCTGGAAGCCGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 111
>seq2456210
Length=160
Score = 132 bits (146), Expect = 5e-29
Identities = 78/81 (96%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 93 CACCATCTACGGCGGCATGCTGCCGAAGATCCGTTGCGCACTGGAAGCAGTGCAAGGCGG 152
||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1 CACCATCTACGGCGGCATGCTGCCGAAGATCCGTTGCGCGCTGGAAGCCGTGCAAGGCGG 60
Query 153 CGTGGGCAGCTCGCTGATCCT 173
||| |||||||||||||||||
Sbjct 61 CGTCGGCAGCTCGCTGATCCT 81
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 518410778553
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |