Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002002.1 Length=198 Score E Sequences producing significant alignments: (Bits) Value seq331504 273 2e-71 seq3082825 239 5e-61 seq238816 221 1e-55 seq2464348 199 4e-49 seq2504358 196 5e-48 seq2973442 176 5e-42 seq2456210 132 5e-29 >seq331504 Length=1475 Score = 273 bits (302), Expect = 2e-71 Identities = 165/173 (95%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 489 TGCTGACCAACATCGCCGGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGTTT-GACC 547 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 548 ACTCAACAAGTGGACGACCTGATCGCCGATGGCACCATCTACGGCGGCATGCTGCCGAAG 607 Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 173 ||||||||||| |||||||| |||||||||||||||||||| ||||||||||| Sbjct 608 ATCCGTTGCGCGCTGGAAGCCGTGCAAGGCGGCGTGGGCAGTTCGCTGATCCT 660 >seq3082825 Length=2588 Score = 239 bits (264), Expect = 5e-61 Identities = 158/174 (91%), Gaps = 1/174 (1%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 ||||||||||||||||| |||||||||||||||||||||| || | |||||| | ||| Sbjct 231 TGCTGACCAACATCGCCGGCCTGATGGACAAGGAAGGCAAAGTACTCACCGGCCT-GACT 289 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 ||||||||||| ||||| ||||||||||| ||||||||||| |||||||||||||||||| Sbjct 290 ACGCAACAAGTCGACGAGCTGATCGCCGATGGCACCATCTATGGCGGCATGCTGCCGAAG 349 Query 121 ATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCTC 174 ||||| ||||| |||||||| |||||||||||||| |||||||||||||||||| Sbjct 350 ATCCGCTGCGCGCTGGAAGCGGTGCAAGGCGGCGTCGGCAGCTCGCTGATCCTC 403 >seq238816 Length=1242 Score = 221 bits (244), Expect = 1e-55 Identities = 157/180 (87%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 ||||||||||||| ||| |||||||||||||||||||||||||| |||| || || |||| Sbjct 805 TGCTGACCAACATTGCCGGCCTGATGGACAAGGAAGGCAAGGTGCTGACGGGTTT-GACC 747 Query 61 ACGCAACAAGTGGACGACCT-------GATCGCCGACGGCACCATCTACGGCGGCATGCT 113 || || || |||||||| | ||||||||||||||||||||||||||||||||| Sbjct 746 ACCCAGCAGGTGGACGAGCNNNNNNNNGATCGCCGACGGCACCATCTACGGCGGCATGCT 687 Query 114 GCCGAAGATCCGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 173 |||||||||||||||||| |||||||| || |||||||||||||| ||||||||||| || Sbjct 686 GCCGAAGATCCGTTGCGCGCTGGAAGCCGTACAAGGCGGCGTGGGTAGCTCGCTGATTCT 627 >seq2464348 Length=162 Score = 199 bits (220), Expect = 4e-49 Identities = 129/140 (92%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 ||||||||||||| ||| |||||||||||||||||||||||||| |||| ||||| |||| Sbjct 22 TGCTGACCAACATTGCCGGCCTGATGGACAAGGAAGGCAAGGTGCTGACGGGCTT-GACC 80 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 || || || |||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct 81 ACCCAGCAGGTGGACGAGTTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 140 Query 121 ATCCGTTGCGCACTGGAAGC 140 ||||||||||| |||||||| Sbjct 141 ATCCGTTGCGCGCTGGAAGC 160 >seq2504358 Length=167 Score = 196 bits (216), Expect = 5e-48 Identities = 119/125 (95%), Gaps = 1/125 (1%) Strand=Plus/Plus Query 1 TGCTGACCAACATCGCCCGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGCTTCGACC 60 ||||||||||||||||| |||||||||||||||||||||||||||||||||| || |||| Sbjct 44 TGCTGACCAACATCGCCGGCCTGATGGACAAGGAAGGCAAGGTGTTGACCGGTTT-GACC 102 Query 61 ACGCAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAG 120 || |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 103 ACTCAACAAGTGGACGAACTGATCGCCGATGGCACCATCTACGGCGGCATGCTGCCGAAG 162 Query 121 ATCCG 125 ||||| Sbjct 163 ATCCG 167 >seq2973442 Length=529 Score = 176 bits (194), Expect = 5e-42 Identities = 105/110 (95%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 64 CAACAAGTGGACGACCTGATCGCCGACGGCACCATCTACGGCGGCATGCTGCCGAAGATC 123 |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 2 CAACAAGTGGACGAACTGATCGCCGATGGCACCATCTACGGCGGCATGCTGCCGAAGATC 61 Query 124 CGTTGCGCACTGGAAGCAGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 173 || ||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 62 CGCTGCGCGCTGGAAGCCGTGCAAGGCGGCGTGGGCAGCTCGCTGATCCT 111 >seq2456210 Length=160 Score = 132 bits (146), Expect = 5e-29 Identities = 78/81 (96%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 93 CACCATCTACGGCGGCATGCTGCCGAAGATCCGTTGCGCACTGGAAGCAGTGCAAGGCGG 152 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct 1 CACCATCTACGGCGGCATGCTGCCGAAGATCCGTTGCGCGCTGGAAGCCGTGCAAGGCGG 60 Query 153 CGTGGGCAGCTCGCTGATCCT 173 ||| ||||||||||||||||| Sbjct 61 CGTCGGCAGCTCGCTGATCCT 81 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518410778553