Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002003.1 Length=209 Score E Sequences producing significant alignments: (Bits) Value seq2916841 138 1e-30 seq287630 129 6e-28 >seq2916841 Length=361 Score = 138 bits (152), Expect = 1e-30 Identities = 160/208 (77%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 1 CAAACAGCACGCGCACGTAGCGGCCCGAGGTCTTCGGGGCCGGTCCACAGGCCACCGGCG 60 ||||||||| |||||||||||| |||||||| |||| | ||||| || ||||| Sbjct 284 CAAACAGCATCTGCACGTAGCGGCT-GAGGTCTTTCGGGCTTGCCCACAAACCGCCGGCA 226 Query 61 GCGAGGTCACGCACCCGGGGGTCGGTGCCGGCCTTCGCCATCCTCGTAGCCGTGGGCGCG 120 |||||||| ||||| | | |||| | ||| |||| || |||||||| | ||||| Sbjct 225 GCGAGGTCGCGCACTTGCGCATCGGCACTGGCGA-CGCCGTCTTCGTAGCCCAGCGCGCG 167 Query 121 ATAGCTCATTTCGCGCACCGGTACCCAGGAAACTCGGACTGGTTCATTTCGCAAGGGTGT 180 || ||||| | ||||||||||||| | |||||| ||||||||||| || ||| || | Sbjct 166 GTAACTCATCT-GCGCACCGGTACCGACAAAACTC-GACTGGTTCATCTC-CAATGGCTT 110 Query 181 GAGCAGGCTGCTTTCGTAACTGGGCTTC 208 ||||||||||| || | ||||| ||||| Sbjct 109 GAGCAGGCTGCCTT-GCAACTGCGCTTC 83 >seq287630 Length=1179 Score = 129 bits (142), Expect = 6e-28 Identities = 149/194 (77%), Gaps = 5/194 (3%) Strand=Plus/Minus Query 1 CAAACAGCACGCGCACGTAGCGGCCCGAGGTCTTCGGGGCCGGTCCACAGGCCACCGGCG 60 ||||||||| |||||||| ||| |||||||| ||||| || ||||| ||| ||||| Sbjct 494 CAAACAGCATCTGCACGTAGTGGCT-GAGGTCTTTGGGGCTGGCCCACAAGCCGCCGGCA 436 Query 61 GCGAGGTCACGCACCCGGGGGTCGGTGCCGGCCTTCGCCATCCTCGTAGCCGTGGGCGCG 120 || |||||||||||| | | ||||| | ||| |||| || ||||| ||| ||||||| Sbjct 435 GCCAGGTCACGCACCTGTGCATCGGTACTTGCC-ACGCCGTCTTCGTACCCGAGGGCGCG 377 Query 121 ATAGCTCATTTCGCGCACCGGTACCCAGGAAACTCGGACTGGTTCATTTCGCAAGGGTGT 180 | |||||| | ||| ||||| || | |||||| ||||||||||| || || || | Sbjct 376 AAAGCTCAACT-GCGTGCCGGTGCCGACAAAACTC-GACTGGTTCATCTC-CAGTGGCTT 320 Query 181 GAGCAGGCTGCTTT 194 |||||||| |||| Sbjct 319 GAGCAGGCGACTTT 306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552557596302