Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002011.1
Length=284
Score E
Sequences producing significant alignments: (Bits) Value
seq2883750 302 7e-80
seq2890427 260 2e-67
seq2423589 253 3e-65
seq2742887 226 4e-57
seq2947027 219 7e-55
seq507198 179 6e-43
seq2873775 152 8e-35
seq1020223 131 3e-28
seq199464 122 1e-25
seq336399 75.2 2e-11
>seq2883750
Length=307
Score = 302 bits (334), Expect = 7e-80
Identities = 196/214 (92%), Gaps = 1/214 (0%)
Strand=Plus/Plus
Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60
|||||| |||||||||||||||||||||| ||||| || ||||||| | | |||||| |
Sbjct 95 TACGCCCTGCGGCCGCTGGATTTCGCGGTATTCCCCACC-ATTCTGCTGATTGCGACCTT 153
Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120
||| || ||||| ||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 154 GCTGCGCCTGGCGCTGAACGTGGCGTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 213
Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 180
||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 214 CCACGCCGCCGCCGGTAAGGTGATCCAGGCGTTCGGTGAGGTGGTGATCGGCGGTAACTA 273
Query 181 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATG 214
||||||||||||||||||||||||||||||||||
Sbjct 274 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATG 307
>seq2890427
Length=316
Score = 260 bits (288), Expect = 2e-67
Identities = 178/199 (89%), Gaps = 1/199 (1%)
Strand=Plus/Plus
Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60
|||||| ||||||| |||||||| ||||||||||| || || |||| ||||||||||||
Sbjct 119 TACGCCCTGCGGCCACTGGATTTTGCGGTGTTCCCCACC-ATCCTGCTGGTGGCGACCCT 177
Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120
||| || ||||| ||||||| || ||||| || |||||||||||||| |||||||||||
Sbjct 178 GCTGCGCCTGGCGCTGAACGTGGCGTCCACCCGCGTGGTGATGCTCCATGGCCAGGACGG 237
Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 180
|| ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TCACGCCGCCGCCGGCAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 297
Query 181 CGTGGTCGGTATCGTGGTG 199
|||||||||||||||||||
Sbjct 298 CGTGGTCGGTATCGTGGTG 316
>seq2423589
Length=155
Score = 253 bits (280), Expect = 3e-65
Identities = 149/155 (96%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 118 CGGCCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAA 177
|||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 155 CGGCCACGCCGCCGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAA 96
Query 178 CTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGAC 237
||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct 95 CTATGTGGTCGGTATCGTGGTGTTCGCGATTTTGATGATCATCAACTTCGTGGTGGTGAC 36
Query 238 CAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGC 272
|||||||||||||||||||||||||||||||||||
Sbjct 35 CAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGC 1
>seq2742887
Length=211
Score = 226 bits (250), Expect = 4e-57
Identities = 156/175 (89%), Gaps = 1/175 (1%)
Strand=Plus/Plus
Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60
|| ||| |||||||||||||||||||||| |||||||| |||| ||| | | ||||||||
Sbjct 38 TATGCCCTGCGGCCGCTGGATTTCGCGGTATTCCCGAC-TATTTTGCTGATTGCGACCCT 96
Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120
||| || ||||| | ||||| || || ||||||||||||||||||||||| ||||||||
Sbjct 97 GCTGCGCCTGGCGCTCAACGTGGCGTCTACGCGGGTGGTGATGCTCCACGGTCAGGACGG 156
Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGT 175
||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 157 CCACGCCGCCGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGT 211
>seq2947027
Length=436
Score = 219 bits (242), Expect = 7e-55
Identities = 126/129 (98%), Gaps = 0/129 (0%)
Strand=Plus/Minus
Query 154 CGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGAT 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 CGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGAT 377
Query 214 GATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCG 273
||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 376 GATTATCAACTTCGTGGTGGTGACCAAGGGTGCCGGGCGGATTTCCGAGGTGAGCGCGCG 317
Query 274 GTTTACCCT 282
|||||||||
Sbjct 316 GTTTACCCT 308
>seq507198
Length=102
Score = 179 bits (198), Expect = 6e-43
Identities = 101/102 (99%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 154 CGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGAT 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 CGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGAT 60
Query 214 GATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGAT 255
|||||||||||| |||||||||||||||||||||||||||||
Sbjct 61 GATCATCAACTTCGTGGTGGTGACCAAGGGCGCCGGGCGGAT 102
>seq2873775
Length=294
Score = 152 bits (168), Expect = 8e-35
Identities = 89/92 (97%), Gaps = 0/92 (0%)
Strand=Plus/Plus
Query 193 CGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCG 252
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1 CGTGGTGTTCGCGATCCTGATGATCATCAACTTCGTGGTGGTGACCAAGGGCGCCGGGCG 60
Query 253 GATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284
||| ||||||||||||||||| ||||||||||
Sbjct 61 GATCTCCGAGGTGAGCGCGCGCTTTACCCTCG 92
>seq1020223
Length=115
Score = 131 bits (144), Expect = 3e-28
Identities = 74/75 (99%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 210 TGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCG 269
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 TGATGATCATCAACTTCGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCG 60
Query 270 CGCGGTTTACCCTCG 284
|||||||||||||||
Sbjct 61 CGCGGTTTACCCTCG 75
>seq199464
Length=601
Score = 122 bits (134), Expect = 1e-25
Identities = 95/112 (85%), Gaps = 1/112 (1%)
Strand=Plus/Minus
Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60
|| ||| ||||||||||||||||||| || |||||||| ||| ||| | | ||||||||
Sbjct 564 TATGCCCTGCGGCCGCTGGATTTCGCCGTATTCCCGACC-ATTTTGCTGATCGCGACCCT 506
Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGC 112
||| || ||||| ||||||| || || ||||||||||||||||||||||||
Sbjct 505 GCTGCGCCTGGCGCTGAACGTGGCGTCTACGCGGGTGGTGATGCTCCACGGC 454
>seq336399
Length=20894
Score = 75.2 bits (82), Expect = 2e-11
Identities = 101/141 (72%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 144 TCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCG 203
||||||||||||| || | ||| | ||||| ||| | ||| || || ||| | |||
Sbjct 9476 TCCAGGCCTTCGGCCAGTTTGTGGTAGGCGGCAACCTGGCGGTGGGCATGGTGATCTTCA 9535
Query 204 CGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGG 263
|||||| | | | ||||||| ||||| | ||||||||| | | ||| | | ||||
Sbjct 9536 TGATCCTCACGGTGGTCAACTTCCTGGTGATCACCAAGGGCTCGGAACGGGTGGCTGAGG 9595
Query 264 TGAGCGCGCGGTTTACCCTCG 284
|| |||| || || || ||||
Sbjct 9596 TGGGCGCACGCTTCACTCTCG 9616
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 785376808227
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