Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002011.1 Length=284 Score E Sequences producing significant alignments: (Bits) Value seq2883750 302 7e-80 seq2890427 260 2e-67 seq2423589 253 3e-65 seq2742887 226 4e-57 seq2947027 219 7e-55 seq507198 179 6e-43 seq2873775 152 8e-35 seq1020223 131 3e-28 seq199464 122 1e-25 seq336399 75.2 2e-11 >seq2883750 Length=307 Score = 302 bits (334), Expect = 7e-80 Identities = 196/214 (92%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60 |||||| |||||||||||||||||||||| ||||| || ||||||| | | |||||| | Sbjct 95 TACGCCCTGCGGCCGCTGGATTTCGCGGTATTCCCCACC-ATTCTGCTGATTGCGACCTT 153 Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120 ||| || ||||| ||||||| || ||||||||||||||||||||||||||||||||||| Sbjct 154 GCTGCGCCTGGCGCTGAACGTGGCGTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 213 Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 180 ||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 214 CCACGCCGCCGCCGGTAAGGTGATCCAGGCGTTCGGTGAGGTGGTGATCGGCGGTAACTA 273 Query 181 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATG 214 |||||||||||||||||||||||||||||||||| Sbjct 274 CGTGGTCGGTATCGTGGTGTTCGCGATCCTGATG 307 >seq2890427 Length=316 Score = 260 bits (288), Expect = 2e-67 Identities = 178/199 (89%), Gaps = 1/199 (1%) Strand=Plus/Plus Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60 |||||| ||||||| |||||||| ||||||||||| || || |||| |||||||||||| Sbjct 119 TACGCCCTGCGGCCACTGGATTTTGCGGTGTTCCCCACC-ATCCTGCTGGTGGCGACCCT 177 Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120 ||| || ||||| ||||||| || ||||| || |||||||||||||| ||||||||||| Sbjct 178 GCTGCGCCTGGCGCTGAACGTGGCGTCCACCCGCGTGGTGATGCTCCATGGCCAGGACGG 237 Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 180 || ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 238 TCACGCCGCCGCCGGCAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTA 297 Query 181 CGTGGTCGGTATCGTGGTG 199 ||||||||||||||||||| Sbjct 298 CGTGGTCGGTATCGTGGTG 316 >seq2423589 Length=155 Score = 253 bits (280), Expect = 3e-65 Identities = 149/155 (96%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 118 CGGCCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAA 177 |||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 155 CGGCCACGCCGCCGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAA 96 Query 178 CTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGAC 237 ||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||| Sbjct 95 CTATGTGGTCGGTATCGTGGTGTTCGCGATTTTGATGATCATCAACTTCGTGGTGGTGAC 36 Query 238 CAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGC 272 ||||||||||||||||||||||||||||||||||| Sbjct 35 CAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGC 1 >seq2742887 Length=211 Score = 226 bits (250), Expect = 4e-57 Identities = 156/175 (89%), Gaps = 1/175 (1%) Strand=Plus/Plus Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60 || ||| |||||||||||||||||||||| |||||||| |||| ||| | | |||||||| Sbjct 38 TATGCCCTGCGGCCGCTGGATTTCGCGGTATTCCCGAC-TATTTTGCTGATTGCGACCCT 96 Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGCCAGGACGG 120 ||| || ||||| | ||||| || || ||||||||||||||||||||||| |||||||| Sbjct 97 GCTGCGCCTGGCGCTCAACGTGGCGTCTACGCGGGTGGTGATGCTCCACGGTCAGGACGG 156 Query 121 CCATGCCGCTGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGT 175 ||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 157 CCACGCCGCCGCCGGTAAGGTGATCCAGGCCTTCGGTGAGGTGGTGATCGGCGGT 211 >seq2947027 Length=436 Score = 219 bits (242), Expect = 7e-55 Identities = 126/129 (98%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 154 CGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGAT 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 436 CGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGAT 377 Query 214 GATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCGCGCG 273 ||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 376 GATTATCAACTTCGTGGTGGTGACCAAGGGTGCCGGGCGGATTTCCGAGGTGAGCGCGCG 317 Query 274 GTTTACCCT 282 ||||||||| Sbjct 316 GTTTACCCT 308 >seq507198 Length=102 Score = 179 bits (198), Expect = 6e-43 Identities = 101/102 (99%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 154 CGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGAT 213 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 CGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCGCGATCCTGAT 60 Query 214 GATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGAT 255 |||||||||||| ||||||||||||||||||||||||||||| Sbjct 61 GATCATCAACTTCGTGGTGGTGACCAAGGGCGCCGGGCGGAT 102 >seq2873775 Length=294 Score = 152 bits (168), Expect = 8e-35 Identities = 89/92 (97%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 193 CGTGGTGTTCGCGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCG 252 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 1 CGTGGTGTTCGCGATCCTGATGATCATCAACTTCGTGGTGGTGACCAAGGGCGCCGGGCG 60 Query 253 GATTTCCGAGGTGAGCGCGCGGTTTACCCTCG 284 ||| ||||||||||||||||| |||||||||| Sbjct 61 GATCTCCGAGGTGAGCGCGCGCTTTACCCTCG 92 >seq1020223 Length=115 Score = 131 bits (144), Expect = 3e-28 Identities = 74/75 (99%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 210 TGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCG 269 |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 TGATGATCATCAACTTCGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGGTGAGCG 60 Query 270 CGCGGTTTACCCTCG 284 ||||||||||||||| Sbjct 61 CGCGGTTTACCCTCG 75 >seq199464 Length=601 Score = 122 bits (134), Expect = 1e-25 Identities = 95/112 (85%), Gaps = 1/112 (1%) Strand=Plus/Minus Query 1 TACGCCTTGCGGCCGCTGGATTTCGCGGTGTTCCCGACGTATTCTGCAGGTGGCGACCCT 60 || ||| ||||||||||||||||||| || |||||||| ||| ||| | | |||||||| Sbjct 564 TATGCCCTGCGGCCGCTGGATTTCGCCGTATTCCCGACC-ATTTTGCTGATCGCGACCCT 506 Query 61 GCTACGTCTGGCATTGAACGTCGCCTCCACGCGGGTGGTGATGCTCCACGGC 112 ||| || ||||| ||||||| || || |||||||||||||||||||||||| Sbjct 505 GCTGCGCCTGGCGCTGAACGTGGCGTCTACGCGGGTGGTGATGCTCCACGGC 454 >seq336399 Length=20894 Score = 75.2 bits (82), Expect = 2e-11 Identities = 101/141 (72%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 144 TCCAGGCCTTCGGTGAGGTGGTGATCGGCGGTAACTACGTGGTCGGTATCGTGGTGTTCG 203 ||||||||||||| || | ||| | ||||| ||| | ||| || || ||| | ||| Sbjct 9476 TCCAGGCCTTCGGCCAGTTTGTGGTAGGCGGCAACCTGGCGGTGGGCATGGTGATCTTCA 9535 Query 204 CGATCCTGATGATCATCAACTTTGTGGTGGTGACCAAGGGCGCCGGGCGGATTTCCGAGG 263 |||||| | | | ||||||| ||||| | ||||||||| | | ||| | | |||| Sbjct 9536 TGATCCTCACGGTGGTCAACTTCCTGGTGATCACCAAGGGCTCGGAACGGGTGGCTGAGG 9595 Query 264 TGAGCGCGCGGTTTACCCTCG 284 || |||| || || || |||| Sbjct 9596 TGGGCGCACGCTTCACTCTCG 9616 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785376808227