Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002049.1 Length=571 Score E Sequences producing significant alignments: (Bits) Value seq70126 787 0.0 seq3061282 729 0.0 seq3001575 576 5e-162 seq2974570 542 9e-152 seq292181 311 3e-82 seq2694803 286 1e-74 seq2511086 235 2e-59 seq2705144 104 8e-20 seq2625254 104 8e-20 seq2976264 86.0 2e-14 >seq70126 Length=18489 Score = 787 bits (872), Expect = 0.0 Identities = 517/568 (91%), Gaps = 2/568 (0%) Strand=Plus/Plus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||| ||| |||| ||||||||||||||| |||||||| ||||||||||||||||||| Sbjct 8794 TCGACCATCGTGTTCTGGTCGTTCCGGGTCATGGTCGGCCTGGGCTTCCTGATGATCTTC 8853 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 |||||||| |||||||| |||||| |||||||||||||||||||||||||||||| |||| Sbjct 8854 ACCGGTCT-GTTCAGCCTGTGGCT-GCGCCGGGGCGACAAGATGTACACGTCCAAACCGT 8911 Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183 ||||||||||||||||||||||||| || ||||| ||||||| ||||| ||||| |||| Sbjct 8912 TCCTGTACCTGGCGTTGTGGATGGGACCATCCGGCCTGATCGCCATTCTTGCCGGTTGGT 8971 Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243 | ||||| ||||||||||| |||||||||||||| || || ||||||||||| ||||||| Sbjct 8972 TTACCACCGAAATCGGCCGCCAGCCGTGGGTGGTGTATGGGCTGATGCGCACTGCGGATG 9031 Query 244 CGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGT 303 | || |||||||||||||||| ||||||||| || || |||||||||||||||||||||| Sbjct 9032 CTTCATCCGGGCATAGCCTGGCGCAGATGACCATCACCCTGGTGTTGTTCGTGGTGGTGT 9091 Query 304 ACTTCGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGC 363 |||||||||||||||| |||||| ||||||||||||||||||||||||||||||| |||| Sbjct 9092 ACTTCGCGCTGTTCGGCGCCGGTTTGGGCTACATGATGCGCCTGGTGCGCAAAGGCCCGC 9151 Query 364 AGACCCACGAAGGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCC 423 |||||||||||||| ||||| ||||| ||||| |||||||||||||| || || ||| Sbjct 9152 AGACCCACGAAGGCAGCGAGCCAACCCATGGTGGCCCTGGCCAGAAACGTACACCGTCCC 9211 Query 424 GTCCGTTGTCTGCCGCCGATGATGGCAGCGATGACGACCACACCCACATCCAGCACAAGG 483 |||||||||| ||||||||||| |||||||| ||||||||| ||||||||||||||||| Sbjct 9212 GTCCGTTGTCCGCCGCCGATGACGGCAGCGACGACGACCACGGCCACATCCAGCACAAGG 9271 Query 484 GGCATTGAGATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTCGGCATC 543 || |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| Sbjct 9272 GGAATTGAGATGGGTATTGATCTTCCGCTGATCTGGGCCGTGATCATCATCTTCGGCATC 9331 Query 544 ATGATGTACGTGGTCATGGACGGCTTCG 571 |||||||||||||| |||||||| |||| Sbjct 9332 ATGATGTACGTGGTGATGGACGGTTTCG 9359 >seq3061282 Length=1361 Score = 729 bits (808), Expect = 0.0 Identities = 498/558 (89%), Gaps = 2/558 (0%) Strand=Plus/Minus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||||| | |||| ||||||||||||||| |||||||| ||| ||||||||||||||| Sbjct 556 TCGACCGTGGTGTTCTGGTCGTTCCGGGTCATGGTCGGCCTGGGTTTCCTGATGATCTTC 497 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 || || || |||||||| |||||| |||||| |||||||||||||||||||||| ||||| Sbjct 496 ACGGG-CTTGTTCAGCCTGTGGCT-GCGCCGTGGCGACAAGATGTACACGTCCAGGCCGT 439 Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183 |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 438 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGTCTGATCGCGATTCTCGCCGGCTGGT 379 Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243 ||||||| |||||||| || |||||||||||||||||||| ||||||||||||||||||| Sbjct 378 TCACCACCGAAATCGGTCGCCAGCCGTGGGTGGTCTACGGGCTGATGCGCACGGCGGATG 319 Query 244 CGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGT 303 | || |||||||||||||||| ||||||||| || || |||||| ||||||||||||||| Sbjct 318 CCTCTTCCGGGCATAGCCTGGCGCAGATGACCATCACCCTGGTGCTGTTCGTGGTGGTGT 259 Query 304 ACTTCGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGC 363 |||||||||||||||| || || ||||| ||||||||||| |||||||||||||| || Sbjct 258 ACTTCGCGCTGTTCGGCGCGGGCCTGGGTTACATGATGCGTCTGGTGCGCAAAGGGCCTG 199 Query 364 AGACCCACGAAGGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCC 423 | |||| | | |||||||||||| ||||| |||||||||||||| || || || | Sbjct 198 TGGTTTACGAGGTCACTGAGCCGACCCAGGGTGGACCTGGCCAGAAACGTACCCCGGCGC 139 Query 424 GTCCGTTGTCTGCCGCCGATGATGGCAGCGATGACGACCACACCCACATCCAGCACAAGG 483 |||||||||| || ||||||||||||| ||| |||||||| | ||||||||||||||| Sbjct 138 GTCCGTTGTCCGCTGCCGATGATGGCACCGACAACGACCACGACGACATCCAGCACAAGG 79 Query 484 GGCATTGAGATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTTCGGCATC 543 |||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||| Sbjct 78 GGCATTGAGATGGGCATTGATCTTCCGCTGATCTGGGCCGTGATCATCATCTTCGGCATC 19 Query 544 ATGATGTACGTGGTCATG 561 |||||||||||||| ||| Sbjct 18 ATGATGTACGTGGTGATG 1 >seq3001575 Length=673 Score = 576 bits (638), Expect = 5e-162 Identities = 386/428 (90%), Gaps = 2/428 (0%) Strand=Plus/Plus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||| | | |||| ||||||||||||||| |||||||| ||||||||||||||| ||| Sbjct 248 TCGACCATTGTGTTCTGGTCGTTCCGGGTCATGGTCGGCCTGGGCTTCCTGATGATTTTC 307 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 |||||||| |||||||| |||||| |||||| || ||||||||||||||||||||||||| Sbjct 308 ACCGGTCT-GTTCAGCCTGTGGCT-GCGCCGCGGTGACAAGATGTACACGTCCAAGCCGT 365 Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183 ||||||||||||| ||||||||||||| ||||| ||||||||||||| ||||| |||| Sbjct 366 TCCTGTACCTGGCACTGTGGATGGGCCCTTCCGGCCTGATCGCGATTCTTGCCGGTTGGT 425 Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243 ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||| || | Sbjct 426 TCACCACCGAAATCGGCCGACAGCCGTGGGTGGTCTACGGGCTGATGCGCACGGCAGACG 485 Query 244 CGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGT 303 ||||||||||||||||||||| ||||||||| |||||||||||| |||| |||||||||| Sbjct 486 CGTCCTCCGGGCATAGCCTGGCGCAGATGACCATTACGCTGGTGCTGTTTGTGGTGGTGT 545 Query 304 ACTTCGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGC 363 |||||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||| Sbjct 546 ACTTCGCGCTGTTCGGCGCCGGGTTGGGGTACATGATGCGCCTGGTGCGCAAAGGTCCGC 605 Query 364 AGACCCACGAAGGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCC 423 |||| ||||||||| ||||| ||||| ||||| |||||||||||||| || || |||| Sbjct 606 AGACTCACGAAGGCAGCGAGCCAACCCATGGTGGCCCTGGCCAGAAACGTACACCGGCCC 665 Query 424 GTCCGTTG 431 |||||||| Sbjct 666 GTCCGTTG 673 >seq2974570 Length=534 Score = 542 bits (600), Expect = 9e-152 Identities = 351/382 (92%), Gaps = 2/382 (1%) Strand=Plus/Minus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 |||||| | | |||| ||||||||||||||| ||| |||| ||||||||||||||||||| Sbjct 380 TCGACCATTGTGTTCTGGTCGTTCCGGGTCATGGTTGGCCTGGGCTTCCTGATGATCTTC 321 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 |||||||| |||||||| ||||| |||||||||||||||||||||||| |||| |||| Sbjct 320 ACCGGTCT-GTTCAGCCTCTGGCT-GCGCCGGGGCGACAAGATGTACACCTCCAGACCGT 263 Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183 |||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||| Sbjct 262 TCCTGTACCTGGCGCTGTGGATGGGCCCGTCCGGCCTGATCGCGATTCTTGCCGGCTGGT 203 Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243 ||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 202 TCACCACCGAAATCGGCCGCCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 143 Query 244 CGTCCTCCGGGCATAGCCTGGTGCAGATGACGATTACGCTGGTGTTGTTCGTGGTGGTGT 303 ||||||||||||||||||||| |||||||||||| || |||||| ||||||||||||||| Sbjct 142 CGTCCTCCGGGCATAGCCTGGCGCAGATGACGATCACCCTGGTGCTGTTCGTGGTGGTGT 83 Query 304 ACTTCGCGCTGTTCGGTGCCGGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGC 363 |||||||||||||||| || || |||||||||||||||||||||||||||||||| |||| Sbjct 82 ACTTCGCGCTGTTCGGCGCAGGGCTGGGCTACATGATGCGCCTGGTGCGCAAAGGGCCGC 23 Query 364 AGACCCACGAAGGCGATGAGCC 385 |||||||||||||| ||||| Sbjct 22 AGACCCACGAAGGCAGCGAGCC 1 >seq292181 Length=1145 Score = 311 bits (344), Expect = 3e-82 Identities = 215/241 (89%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 4 TCGACCGTCGAGTTCAGGTCGTTCCGGGTCAAGGTCGGCCAGGGCTTCCTGATGATCTTC 63 ||||| | | |||| ||||||||||||||| ||| |||| ||| ||||||||||||||| Sbjct 338 TCGACGATTGTGTTCTGGTCGTTCCGGGTCATGGTTGGCCTGGGTTTCCTGATGATCTTC 397 Query 64 ACCGGTCTAGTTCAGCCAGTGGCTAGCGCCGGGGCGACAAGATGTACACGTCCAAGCCGT 123 ||||| || |||||||| ||||| ||| |||||||||||||||||||| |||| ||||| Sbjct 398 ACCGGCCT-GTTCAGCCTCTGGCT-GCGTCGGGGCGACAAGATGTACACCTCCAGGCCGT 455 Query 124 TCCTGTACCTGGCGTTGTGGATGGGCCCGTCCGGGTTGATCGCGATTCTCGCCGGCTGGT 183 |||||||||||||| ||||||||||||||||||| ||||||||||||||||||| |||| Sbjct 456 TCCTGTACCTGGCGCTGTGGATGGGCCCGTCCGGCCTGATCGCGATTCTCGCCGGTTGGT 515 Query 184 TCACCACGGAAATCGGCCGTCAGCCGTGGGTGGTCTACGGCCTGATGCGCACGGCGGATG 243 ||||||| ||||||||||| |||||||||||||||||||| |||||||||||||||| | Sbjct 516 TCACCACCGAAATCGGCCGCCAGCCGTGGGTGGTCTACGGTTTGATGCGCACGGCGGACG 575 Query 244 C 244 | Sbjct 576 C 576 Score = 298 bits (330), Expect = 2e-78 Identities = 177/185 (96%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 387 ACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCCGTCCGTTGTCTGCCGCCGATGAT 446 ||||||||||| |||||||||||||||||||| |||||||||||||| |||||||||||| Sbjct 671 ACCCACGGTGGACCTGGCCAGAAACGCACGCCGGCCCGTCCGTTGTCCGCCGCCGATGAT 730 Query 447 GGCAGCGATGACGACCACACCCACATCCAGCACAAGGGGCATTGAGATGGGTATTGATCT 506 |||||||| ||||||||| ||||||| |||||||||||| |||||||||||||||||||| Sbjct 731 GGCAGCGACGACGACCACGCCCACATTCAGCACAAGGGGAATTGAGATGGGTATTGATCT 790 Query 507 TCCGCTGATCCGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGG 566 |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 791 TCCGCTGATCTGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGG 850 Query 567 CTTCG 571 ||||| Sbjct 851 CTTCG 855 >seq2694803 Length=196 Score = 286 bits (316), Expect = 1e-74 Identities = 179/193 (93%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 324 GGTCTGGGCTACATGATGCGCCTGGTGCGCAAAGGTCCGCAGACCCACGAAGGCGATGAG 383 || |||||||||||||||||||||||||||||||| |||||||||||||||||| ||| Sbjct 2 GGGCTGGGCTACATGATGCGCCTGGTGCGCAAAGGGCCGCAGACCCACGAAGGCAGCGAG 61 Query 384 CCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCCGTCCGTTGTCTGCCGCCGAT 443 || ||||| ||||| ||||| |||||||||||||| |||||||||||||| ||||||||| Sbjct 62 CCAACCCATGGTGGCCCTGGTCAGAAACGCACGCCGGCCCGTCCGTTGTCCGCCGCCGAT 121 Query 444 GATGGCAGCGATGACGACCACACCCACATCCAGCACAAGGGGCATTGAGATGGGTATTGA 503 ||||||||||||||||||||| ||||||| |||||||||||| ||||||||||||||||| Sbjct 122 GATGGCAGCGATGACGACCACGCCCACATTCAGCACAAGGGGAATTGAGATGGGTATTGA 181 Query 504 TCTTCCGCTGATC 516 ||||||||||||| Sbjct 182 TCTTCCGCTGATC 194 >seq2511086 Length=168 Score = 235 bits (260), Expect = 2e-59 Identities = 153/168 (91%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 369 CACGAAGGCGATGAGCCGACCCACGGTGGTCCTGGCCAGAAACGCACGCCAGCCCGTCCG 428 ||||||||| ||||| ||||| ||||| |||||||||||||| || || ||||||||| Sbjct 168 CACGAAGGCAGCGAGCCAACCCATGGTGGCCCTGGCCAGAAACGTACACCGGCCCGTCCG 109 Query 429 TTGTCTGCCGCCGATGATGGCAGCGATGACGACCACACCCACATCCAGCACAAGGGGCAT 488 ||||| ||||||||||| |||||||| ||||||||| |||||||||||||||||||| || Sbjct 108 TTGTCCGCCGCCGATGACGGCAGCGACGACGACCACGCCCACATCCAGCACAAGGGGAAT 49 Query 489 TGAGATGGGTATTGATCTTCCGCTGATCCGGGCCGTGATCATCATCTT 536 |||||||||||||||||||||||||||| ||||||||||||||||||| Sbjct 48 TGAGATGGGTATTGATCTTCCGCTGATCTGGGCCGTGATCATCATCTT 1 >seq2705144 Length=199 Score = 104 bits (114), Expect = 8e-20 Identities = 60/62 (97%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 510 GCTGATCCGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTT 569 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 199 GCTGATCTGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTGATGGACGGCTT 140 Query 570 CG 571 || Sbjct 139 CG 138 >seq2625254 Length=184 Score = 104 bits (114), Expect = 8e-20 Identities = 60/62 (97%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 510 GCTGATCCGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTT 569 ||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 184 GCTGATCTGGGCCGTGATCATCATCTTCGGCATCATGATGTACGTGGTGATGGACGGCTT 125 Query 570 CG 571 || Sbjct 124 CG 123 >seq2976264 Length=541 Score = 86.0 bits (94), Expect = 2e-14 Identities = 47/47 (100%), Gaps = 0/47 (0%) Strand=Plus/Plus Query 525 GATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTTCG 571 ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GATCATCATCTTCGGCATCATGATGTACGTGGTCATGGACGGCTTCG 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1671529362272