Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002051.1
Length=353
Score E
Sequences producing significant alignments: (Bits) Value
seq3069892 448 1e-123
seq2637324 271 2e-70
seq2721265 250 5e-64
seq2820975 237 3e-60
seq247936 232 1e-58
seq2538068 215 1e-53
seq1658477 185 2e-44
seq483642 152 1e-34
seq2831575 150 4e-34
seq2831388 150 4e-34
seq205679 134 3e-29
seq2891242 127 4e-27
>seq3069892
Length=1603
Score = 448 bits (496), Expect = 1e-123
Identities = 311/353 (88%), Gaps = 0/353 (0%)
Strand=Plus/Plus
Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60
||||||||||||||||||||| || || |||||||||||||||||||||||||| |||||
Sbjct 96 CGACCGCCTGCGCCATGTGGCCGAACGTGCCGAGCTGGGTGAAGGCCGCGAAGCCATCAT 155
Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120
|||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 156 CGCCGTGACCATTCCCGAGAAGCCGGGCAGCTTCAAGGCGTTCTGCGAGGCGGTGGGCAA 215
Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180
||||||||| ||||| ||||||||||| | ||| |||||||||||||||||||||| ||
Sbjct 216 GCGCCAGATTACCGAGTTCAACTACCGCTATCACACCGGCAGCGAGGCGCACATCTTCGT 275
Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240
|||||||||||||||||| || | ||| || ||||| ||| ||||||| ||||| |||||
Sbjct 276 CGGCGTGCAGACCCACCCGGAAAACGATCCGCGCAGGGCGTTGATCGCAAGCCTCACCGA 335
Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300
||||||||||||||||||||||||||||| || || |||||||| | ||||| |||||
Sbjct 336 CCAGGGTTTCCCGGTGCTGGACCTGACCGAAAACGAATTGGCCAAGTTACACATTCGCCA 395
Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353
|||||| ||||| ||||| || | |||||| | || ||||||| || ||||
Sbjct 396 TATGGTGGGCGGGCATGCAGCCAAGGTCAGCGACGAGCTGGTGTTTCGTTTCG 448
>seq2637324
Length=185
Score = 271 bits (300), Expect = 2e-70
Identities = 171/185 (92%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 36 TGGGTGAAGGCCGCGAAGCGATCATCGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCA 95
||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||
Sbjct 1 TGGGTGAAGGCCGCGAAGCCATCATCGCCGTGACCATTCCCGAGCAGCCGGGCAGCTTCA 60
Query 96 AGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGTTTCCACT 155
|||||||||||||||| |||||||||||||| |||||||||||||||||||| | |||||
Sbjct 61 AGGCGTTCTGCGAGGCTGTGGGCAAGCGCCAAATCACCGAATTCAACTACCGCTACCACT 120
Query 156 CCGGCAGCGAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCA 215
||||| |||||||||||||||| |||||||||||||| ||||| || | |||||| ||||
Sbjct 121 CCGGCCGCGAGGCGCACATCTTCGTCGGCGTGCAGACGCACCCGGAAAACGACCCGCGCA 180
Query 216 GCGCG 220
|||||
Sbjct 181 GCGCG 185
>seq2721265
Length=203
Score = 250 bits (276), Expect = 5e-64
Identities = 149/156 (96%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 48 CGACCGCCTGCGCCATGTGGCCGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCCATCAT 107
Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120
|||||||||||| |||||| |||| |||||||||||||||||||||||||||||||||||
Sbjct 108 CGCCGTGACCATCCCCGAGCAGCCGGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 167
Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTC 156
||||||||||||||||||||||||||| | ||||||
Sbjct 168 GCGCCAGATCACCGAATTCAACTACCGCTACCACTC 203
>seq2820975
Length=247
Score = 237 bits (262), Expect = 3e-60
Identities = 167/191 (87%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 163 CGAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCT 222
||||||||||||||| |||||||||||||| ||||| || | |||||| |||||||||||
Sbjct 1 CGAGGCGCACATCTTCGTCGGCGTGCAGACGCACCCGGAAAACGACCCGCGCAGCGCGCT 60
Query 223 GATCGCCAGCCTGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGC 282
||| |||||||| ||| |||||||||||||||||||||||||||||||| || |||||
Sbjct 61 GATTGCCAGCCTCACCAGTCAGGGTTTCCCGGTGCTGGACCTGACCGAGAACGAACTGGC 120
Query 283 CAAGCTGCACATCCGCCATATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGT 342
|||| ||||||||||||| ||||||||||| || ||||| | |||||| |||| ||||
Sbjct 121 CAAGTTGCACATCCGCCACATGGTCGGCGGGCACGCGGCCAAAGTCAGCGATGAGCTGGT 180
Query 343 GTTCCGCTTCG 353
|||||| ||||
Sbjct 181 GTTCCGTTTCG 191
>seq247936
Length=1215
Score = 232 bits (256), Expect = 1e-58
Identities = 166/191 (87%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 163 CGAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCT 222
||||||||||||||| |||||||||||||| ||||| || | |||||| |||||||||||
Sbjct 1215 CGAGGCGCACATCTTCGTCGGCGTGCAGACGCACCCGGAAAACGACCCGCGCAGCGCGCT 1156
Query 223 GATCGCCAGCCTGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGC 282
|||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1155 GATCGCCAGCCTCACCAGTCAGGGTTTCCCGGTGCTGGACCTGACCGAGAACGAGCTGGC 1096
Query 283 CAAGCTGCACATCCGCCATATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGT 342
|||| |||| |||||||| ||||||||||| || || || | |||||| |||| ||||
Sbjct 1095 CAAGTTGCATATCCGCCACATGGTCGGCGGGCACGCAGCCAAAGTCAGCGATGAGCTGGT 1036
Query 343 GTTCCGCTTCG 353
||| || ||||
Sbjct 1035 GTTGCGTTTCG 1025
>seq2538068
Length=172
Score = 215 bits (238), Expect = 1e-53
Identities = 151/172 (88%), Gaps = 0/172 (0%)
Strand=Plus/Plus
Query 133 CGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGTCGGCGTGCAGAC 192
||||||||||||||| | |||||||||| |||||||||||||||| || || ||||||||
Sbjct 1 CGAATTCAACTACCGCTACCACTCCGGCCGCGAGGCGCACATCTTCGTGGGTGTGCAGAC 60
Query 193 CCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGAGCAGGGTTTCCC 252
|| || || | |||||| ||||||||| ||||||||||||| ||| |||||||||||
Sbjct 61 TCATCCGGAAAACGACCCGCGCAGCGCGTTGATCGCCAGCCTCACCAGTCAGGGTTTCCC 120
Query 253 GGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCATATG 304
|||||||||||||||||| || |||||||||||| ||||||| |||||||||
Sbjct 121 GGTGCTGGACCTGACCGAAAACGAGCTGGCCAAGTTGCACATTCGCCATATG 172
>seq1658477
Length=127
Score = 185 bits (204), Expect = 2e-44
Identities = 117/127 (92%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 94 CAAGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGTTTCCA 153
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 CAAGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGCTACCA 60
Query 154 CTCCGGCAGCGAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCG 213
||| ||| |||||||||||||||| |||||||||||||| ||||| || | |||||| ||
Sbjct 61 CTCTGGCCGCGAGGCGCACATCTTCGTCGGCGTGCAGACGCACCCGGAAAACGACCCGCG 120
Query 214 CAGCGCG 220
|||||||
Sbjct 121 CAGCGCG 127
>seq483642
Length=102
Score = 152 bits (168), Expect = 1e-34
Identities = 95/102 (93%), Gaps = 0/102 (0%)
Strand=Plus/Plus
Query 94 CAAGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGTTTCCA 153
|||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1 CAAGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGCTACCA 60
Query 154 CTCCGGCAGCGAGGCGCACATCTTTGTCGGCGTGCAGACCCA 195
||||||| |||||||||||||||| || || |||||||| ||
Sbjct 61 CTCCGGCCGCGAGGCGCACATCTTCGTGGGTGTGCAGACTCA 102
>seq2831575
Length=254
Score = 150 bits (166), Expect = 4e-34
Identities = 92/98 (94%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60
||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| |||||
Sbjct 157 CGACCGCCTGCGCCACGTGGCCGAGCGCGCCGAGTTGGGTGAAGGCCGCGAAGCCATCAT 216
Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGG 98
||||||||||||||||||| |||| |||||||||||||
Sbjct 217 CGCCGTGACCATTCCCGAGCAGCCGGGCAGCTTCAAGG 254
>seq2831388
Length=254
Score = 150 bits (166), Expect = 4e-34
Identities = 92/98 (94%), Gaps = 0/98 (0%)
Strand=Plus/Plus
Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60
||||||||||||||| ||||| || ||||||||||||||||||||||||||||| |||||
Sbjct 157 CGACCGCCTGCGCCACGTGGCCGAACGCGCCGAGCTGGGTGAAGGCCGCGAAGCCATCAT 216
Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGG 98
||||||||||||||||||| |||| |||||||||||||
Sbjct 217 CGCCGTGACCATTCCCGAGCAGCCGGGCAGCTTCAAGG 254
>seq205679
Length=4297
Score = 134 bits (148), Expect = 3e-29
Identities = 95/109 (87%), Gaps = 0/109 (0%)
Strand=Plus/Plus
Query 196 CCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGAGCAGGGTTTCCCGGT 255
||| || | |||||| ||||||||| ||||||||||||| || ||||||||||||||
Sbjct 897 CCCGGAAAACGACCCGCGCAGCGCGTTGATCGCCAGCCTCACAAGCCAGGGTTTCCCGGT 956
Query 256 GCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCATATG 304
||||||||||||||| || |||||||||||| ||||||| |||||||||
Sbjct 957 GCTGGACCTGACCGAAAACGAGCTGGCCAAGTTGCACATTCGCCATATG 1005
>seq2891242
Length=317
Score = 127 bits (140), Expect = 4e-27
Identities = 91/105 (87%), Gaps = 0/105 (0%)
Strand=Plus/Minus
Query 247 TTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCATATGGT 306
|||||||||||||||||||||||| || |||||||||||| ||||||| |||||||||||
Sbjct 317 TTTCCCGGTGCTGGACCTGACCGAAAACGAGCTGGCCAAGTTGCACATTCGCCATATGGT 258
Query 307 CGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTT 351
||||| |||||||| | |||||| | || |||||||||| ||
Sbjct 257 GGGCGGGCATGCGGCCAAAGTCAGCGACGAGCTGGTGTTCCGGTT 213
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 995474815008
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