Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002051.1 Length=353 Score E Sequences producing significant alignments: (Bits) Value seq3069892 448 1e-123 seq2637324 271 2e-70 seq2721265 250 5e-64 seq2820975 237 3e-60 seq247936 232 1e-58 seq2538068 215 1e-53 seq1658477 185 2e-44 seq483642 152 1e-34 seq2831575 150 4e-34 seq2831388 150 4e-34 seq205679 134 3e-29 seq2891242 127 4e-27 >seq3069892 Length=1603 Score = 448 bits (496), Expect = 1e-123 Identities = 311/353 (88%), Gaps = 0/353 (0%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||||||||||| || || |||||||||||||||||||||||||| ||||| Sbjct 96 CGACCGCCTGCGCCATGTGGCCGAACGTGCCGAGCTGGGTGAAGGCCGCGAAGCCATCAT 155 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 |||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| Sbjct 156 CGCCGTGACCATTCCCGAGAAGCCGGGCAGCTTCAAGGCGTTCTGCGAGGCGGTGGGCAA 215 Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGT 180 ||||||||| ||||| ||||||||||| | ||| |||||||||||||||||||||| || Sbjct 216 GCGCCAGATTACCGAGTTCAACTACCGCTATCACACCGGCAGCGAGGCGCACATCTTCGT 275 Query 181 CGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGA 240 |||||||||||||||||| || | ||| || ||||| ||| ||||||| ||||| ||||| Sbjct 276 CGGCGTGCAGACCCACCCGGAAAACGATCCGCGCAGGGCGTTGATCGCAAGCCTCACCGA 335 Query 241 GCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCA 300 ||||||||||||||||||||||||||||| || || |||||||| | ||||| ||||| Sbjct 336 CCAGGGTTTCCCGGTGCTGGACCTGACCGAAAACGAATTGGCCAAGTTACACATTCGCCA 395 Query 301 TATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTTCG 353 |||||| ||||| ||||| || | |||||| | || ||||||| || |||| Sbjct 396 TATGGTGGGCGGGCATGCAGCCAAGGTCAGCGACGAGCTGGTGTTTCGTTTCG 448 >seq2637324 Length=185 Score = 271 bits (300), Expect = 2e-70 Identities = 171/185 (92%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 36 TGGGTGAAGGCCGCGAAGCGATCATCGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCA 95 ||||||||||||||||||| |||||||||||||||||||||||| |||| |||||||||| Sbjct 1 TGGGTGAAGGCCGCGAAGCCATCATCGCCGTGACCATTCCCGAGCAGCCGGGCAGCTTCA 60 Query 96 AGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGTTTCCACT 155 |||||||||||||||| |||||||||||||| |||||||||||||||||||| | ||||| Sbjct 61 AGGCGTTCTGCGAGGCTGTGGGCAAGCGCCAAATCACCGAATTCAACTACCGCTACCACT 120 Query 156 CCGGCAGCGAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCA 215 ||||| |||||||||||||||| |||||||||||||| ||||| || | |||||| |||| Sbjct 121 CCGGCCGCGAGGCGCACATCTTCGTCGGCGTGCAGACGCACCCGGAAAACGACCCGCGCA 180 Query 216 GCGCG 220 ||||| Sbjct 181 GCGCG 185 >seq2721265 Length=203 Score = 250 bits (276), Expect = 5e-64 Identities = 149/156 (96%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| Sbjct 48 CGACCGCCTGCGCCATGTGGCCGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCCATCAT 107 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 120 |||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||| Sbjct 108 CGCCGTGACCATCCCCGAGCAGCCGGGCAGCTTCAAGGCGTTCTGCGAGGCCGTGGGCAA 167 Query 121 GCGCCAGATCACCGAATTCAACTACCGTTTCCACTC 156 ||||||||||||||||||||||||||| | |||||| Sbjct 168 GCGCCAGATCACCGAATTCAACTACCGCTACCACTC 203 >seq2820975 Length=247 Score = 237 bits (262), Expect = 3e-60 Identities = 167/191 (87%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 163 CGAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCT 222 ||||||||||||||| |||||||||||||| ||||| || | |||||| ||||||||||| Sbjct 1 CGAGGCGCACATCTTCGTCGGCGTGCAGACGCACCCGGAAAACGACCCGCGCAGCGCGCT 60 Query 223 GATCGCCAGCCTGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGC 282 ||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||| Sbjct 61 GATTGCCAGCCTCACCAGTCAGGGTTTCCCGGTGCTGGACCTGACCGAGAACGAACTGGC 120 Query 283 CAAGCTGCACATCCGCCATATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGT 342 |||| ||||||||||||| ||||||||||| || ||||| | |||||| |||| |||| Sbjct 121 CAAGTTGCACATCCGCCACATGGTCGGCGGGCACGCGGCCAAAGTCAGCGATGAGCTGGT 180 Query 343 GTTCCGCTTCG 353 |||||| |||| Sbjct 181 GTTCCGTTTCG 191 >seq247936 Length=1215 Score = 232 bits (256), Expect = 1e-58 Identities = 166/191 (87%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 163 CGAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCGCAGCGCGCT 222 ||||||||||||||| |||||||||||||| ||||| || | |||||| ||||||||||| Sbjct 1215 CGAGGCGCACATCTTCGTCGGCGTGCAGACGCACCCGGAAAACGACCCGCGCAGCGCGCT 1156 Query 223 GATCGCCAGCCTGACCGAGCAGGGTTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGC 282 |||||||||||| ||| |||||||||||||||||||||||||||||||| |||||||| Sbjct 1155 GATCGCCAGCCTCACCAGTCAGGGTTTCCCGGTGCTGGACCTGACCGAGAACGAGCTGGC 1096 Query 283 CAAGCTGCACATCCGCCATATGGTCGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGT 342 |||| |||| |||||||| ||||||||||| || || || | |||||| |||| |||| Sbjct 1095 CAAGTTGCATATCCGCCACATGGTCGGCGGGCACGCAGCCAAAGTCAGCGATGAGCTGGT 1036 Query 343 GTTCCGCTTCG 353 ||| || |||| Sbjct 1035 GTTGCGTTTCG 1025 >seq2538068 Length=172 Score = 215 bits (238), Expect = 1e-53 Identities = 151/172 (88%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 133 CGAATTCAACTACCGTTTCCACTCCGGCAGCGAGGCGCACATCTTTGTCGGCGTGCAGAC 192 ||||||||||||||| | |||||||||| |||||||||||||||| || || |||||||| Sbjct 1 CGAATTCAACTACCGCTACCACTCCGGCCGCGAGGCGCACATCTTCGTGGGTGTGCAGAC 60 Query 193 CCACCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGAGCAGGGTTTCCC 252 || || || | |||||| ||||||||| ||||||||||||| ||| ||||||||||| Sbjct 61 TCATCCGGAAAACGACCCGCGCAGCGCGTTGATCGCCAGCCTCACCAGTCAGGGTTTCCC 120 Query 253 GGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCATATG 304 |||||||||||||||||| || |||||||||||| ||||||| ||||||||| Sbjct 121 GGTGCTGGACCTGACCGAAAACGAGCTGGCCAAGTTGCACATTCGCCATATG 172 >seq1658477 Length=127 Score = 185 bits (204), Expect = 2e-44 Identities = 117/127 (92%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 94 CAAGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGTTTCCA 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1 CAAGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGCTACCA 60 Query 154 CTCCGGCAGCGAGGCGCACATCTTTGTCGGCGTGCAGACCCACCCCGACACCGACCCCCG 213 ||| ||| |||||||||||||||| |||||||||||||| ||||| || | |||||| || Sbjct 61 CTCTGGCCGCGAGGCGCACATCTTCGTCGGCGTGCAGACGCACCCGGAAAACGACCCGCG 120 Query 214 CAGCGCG 220 ||||||| Sbjct 121 CAGCGCG 127 >seq483642 Length=102 Score = 152 bits (168), Expect = 1e-34 Identities = 95/102 (93%), Gaps = 0/102 (0%) Strand=Plus/Plus Query 94 CAAGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGTTTCCA 153 |||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||| Sbjct 1 CAAGGCGTTCTGCGAGGCCGTGGGCAAGCGCCAGATCACCGAATTCAACTACCGCTACCA 60 Query 154 CTCCGGCAGCGAGGCGCACATCTTTGTCGGCGTGCAGACCCA 195 ||||||| |||||||||||||||| || || |||||||| || Sbjct 61 CTCCGGCCGCGAGGCGCACATCTTCGTGGGTGTGCAGACTCA 102 >seq2831575 Length=254 Score = 150 bits (166), Expect = 4e-34 Identities = 92/98 (94%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||||| ||||| |||||||||||| ||||||||||||||||||| ||||| Sbjct 157 CGACCGCCTGCGCCACGTGGCCGAGCGCGCCGAGTTGGGTGAAGGCCGCGAAGCCATCAT 216 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGG 98 ||||||||||||||||||| |||| ||||||||||||| Sbjct 217 CGCCGTGACCATTCCCGAGCAGCCGGGCAGCTTCAAGG 254 >seq2831388 Length=254 Score = 150 bits (166), Expect = 4e-34 Identities = 92/98 (94%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 1 CGACCGCCTGCGCCATGTGGCGGAGCGCGCCGAGCTGGGTGAAGGCCGCGAAGCGATCAT 60 ||||||||||||||| ||||| || ||||||||||||||||||||||||||||| ||||| Sbjct 157 CGACCGCCTGCGCCACGTGGCCGAACGCGCCGAGCTGGGTGAAGGCCGCGAAGCCATCAT 216 Query 61 CGCCGTGACCATTCCCGAGAAGCCCGGCAGCTTCAAGG 98 ||||||||||||||||||| |||| ||||||||||||| Sbjct 217 CGCCGTGACCATTCCCGAGCAGCCGGGCAGCTTCAAGG 254 >seq205679 Length=4297 Score = 134 bits (148), Expect = 3e-29 Identities = 95/109 (87%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 196 CCCCGACACCGACCCCCGCAGCGCGCTGATCGCCAGCCTGACCGAGCAGGGTTTCCCGGT 255 ||| || | |||||| ||||||||| ||||||||||||| || |||||||||||||| Sbjct 897 CCCGGAAAACGACCCGCGCAGCGCGTTGATCGCCAGCCTCACAAGCCAGGGTTTCCCGGT 956 Query 256 GCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCATATG 304 ||||||||||||||| || |||||||||||| ||||||| ||||||||| Sbjct 957 GCTGGACCTGACCGAAAACGAGCTGGCCAAGTTGCACATTCGCCATATG 1005 >seq2891242 Length=317 Score = 127 bits (140), Expect = 4e-27 Identities = 91/105 (87%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 247 TTTCCCGGTGCTGGACCTGACCGAGAATGAGCTGGCCAAGCTGCACATCCGCCATATGGT 306 |||||||||||||||||||||||| || |||||||||||| ||||||| ||||||||||| Sbjct 317 TTTCCCGGTGCTGGACCTGACCGAAAACGAGCTGGCCAAGTTGCACATTCGCCATATGGT 258 Query 307 CGGCGGCCATGCGGCGCACGTCAGCAATGAAGTGGTGTTCCGCTT 351 ||||| |||||||| | |||||| | || |||||||||| || Sbjct 257 GGGCGGGCATGCGGCCAAAGTCAGCGACGAGCTGGTGTTCCGGTT 213 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 995474815008