Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002055.1 Length=294 Score E Sequences producing significant alignments: (Bits) Value seq2753002 352 5e-95 seq2932510 316 3e-84 seq2165847 215 8e-54 seq1299426 212 1e-52 seq2097828 197 2e-48 seq1022538 181 2e-43 seq1786120 172 9e-41 seq1016374 159 6e-37 seq2587213 129 1e-27 seq1279351 129 1e-27 seq2628814 113 7e-23 seq593485 104 4e-20 seq2998223 78.8 2e-12 >seq2753002 Length=214 Score = 352 bits (390), Expect = 5e-95 Identities = 208/215 (97%), Gaps = 1/215 (0%) Strand=Plus/Minus Query 19 CCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTTAGCGACATAGGACCTAAC 78 || || |||||||||||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 214 CCGCAAACGGCAACGGCGATAACCAGCAACAGCGGGAAATTTAGTGACATAGGACCTAAC 155 Query 79 TATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGC 138 |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| || Sbjct 154 TATCCAACCTGAGCACTGCAAGGAAGGCTTCTT-GTGGAATTTCCACGTTGCCCACTTGC 96 Query 139 TTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCA 198 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 95 TTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCA 36 Query 199 CCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAG 233 ||||||||||||||||||||||||||||||||||| Sbjct 35 CCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAG 1 >seq2932510 Length=397 Score = 316 bits (350), Expect = 3e-84 Identities = 188/195 (96%), Gaps = 1/195 (1%) Strand=Plus/Plus Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60 |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||| Sbjct 204 TCGAGCAACGCCAGGAAACCACAAACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 263 Query 61 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATT 120 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 264 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTT-GTGGAATT 322 Query 121 TCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTG 180 ||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| ||| Sbjct 323 TCCACATTGCCCACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGTTTG 382 Query 181 CGCTTACGGCTTACG 195 ||||||||||| ||| Sbjct 383 CGCTTACGGCTGACG 397 >seq2165847 Length=127 Score = 215 bits (238), Expect = 8e-54 Identities = 122/124 (98%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 171 AAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 127 AAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 68 Query 231 GAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 290 ||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 67 GAGTGCCTTGACGGAGGTCCGTGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 8 Query 291 GTCG 294 |||| Sbjct 7 GTCG 4 >seq1299426 Length=120 Score = 212 bits (234), Expect = 1e-52 Identities = 119/120 (99%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 171 AAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 230 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 60 Query 231 GAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 290 ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 61 GAGAGCCTTGACGGAGGTCCGTGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 120 >seq2097828 Length=127 Score = 197 bits (218), Expect = 2e-48 Identities = 120/127 (94%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 133 ACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTT 192 ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 ACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGTTTGCGCTTACGGCTG 60 Query 193 ACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGC 252 ||| | || |||||||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 61 ACGGCGCCACCGTAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGGAGGTCCGC 120 Query 253 GCAATGA 259 ||||||| Sbjct 121 GCAATGA 127 >seq1022538 Length=115 Score = 181 bits (200), Expect = 2e-43 Identities = 109/115 (95%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133 ACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTT 192 ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 115 ACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGTTTGCGCTTACGGCTG 56 Query 193 ACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGG 247 ||||| || |||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 55 ACGTCGCCACCGTAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGGAGG 1 >seq1786120 Length=127 Score = 172 bits (190), Expect = 9e-41 Identities = 104/110 (95%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 185 TACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGG 244 ||||||| ||||| || |||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 TACGGCTGACGTCGCCACCGTAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGG 60 Query 245 AGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 ||| ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 61 AGGGCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCAACGTCG 110 >seq1016374 Length=115 Score = 159 bits (176), Expect = 6e-37 Identities = 93/96 (97%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 199 CCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATG 258 || |||||||||||||||||||||||||||||||| |||||||||||||||||||||||| Sbjct 3 CCACCGTAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGGAGGTCCGCGCAATG 62 Query 259 ATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 ||||||||||||||||||||||||||||| |||||| Sbjct 63 ATCTGCCCGCCAATGGCGGCCTGGATCGCAACGTCG 98 >seq2587213 Length=178 Score = 129 bits (142), Expect = 1e-27 Identities = 77/81 (95%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60 ||||||||||||||||| || || |||||||||||||||||||||||||||||||||||| Sbjct 81 TCGAGCAACGCCAGGAGTCCGCAAACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 22 Query 61 AGCGACATAGGACCTAACTAT 81 || |||||||||||||||||| Sbjct 21 AGTGACATAGGACCTAACTAT 1 >seq1279351 Length=120 Score = 129 bits (142), Expect = 1e-27 Identities = 77/81 (95%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60 |||||||||||||||||||| || |||||||||||||| ||||||||||||||||||||| Sbjct 40 TCGAGCAACGCCAGGAGACCGCAAACGGCAACGGCGATAACCAGCAACAGCGGGAAATTT 99 Query 61 AGCGACATAGGACCTAACTAT 81 || |||||||||||||||||| Sbjct 100 AGTGACATAGGACCTAACTAT 120 >seq2628814 Length=184 Score = 113 bits (124), Expect = 7e-23 Identities = 65/67 (97%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 228 TCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGC 287 |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| Sbjct 184 TCTGAGAGCCTTGACGGAGGTCCGTGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGC 125 Query 288 GACGTCG 294 ||| ||| Sbjct 124 GACATCG 118 >seq593485 Length=104 Score = 104 bits (114), Expect = 4e-20 Identities = 59/60 (98%), Gaps = 0/60 (0%) Strand=Plus/Minus Query 235 GCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 104 GCCTTGACGGAGGTCCGTGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 45 >seq2998223 Length=652 Score = 78.8 bits (86), Expect = 2e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Plus Query 249 CCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294 ||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 1 CCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCAACGTCG 46 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 816419369817