Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002055.1
Length=294
Score E
Sequences producing significant alignments: (Bits) Value
seq2753002 352 5e-95
seq2932510 316 3e-84
seq2165847 215 8e-54
seq1299426 212 1e-52
seq2097828 197 2e-48
seq1022538 181 2e-43
seq1786120 172 9e-41
seq1016374 159 6e-37
seq2587213 129 1e-27
seq1279351 129 1e-27
seq2628814 113 7e-23
seq593485 104 4e-20
seq2998223 78.8 2e-12
>seq2753002
Length=214
Score = 352 bits (390), Expect = 5e-95
Identities = 208/215 (97%), Gaps = 1/215 (0%)
Strand=Plus/Minus
Query 19 CCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTTAGCGACATAGGACCTAAC 78
|| || |||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 214 CCGCAAACGGCAACGGCGATAACCAGCAACAGCGGGAAATTTAGTGACATAGGACCTAAC 155
Query 79 TATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATTTCCACGTTGCCCACTCGC 138
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 154 TATCCAACCTGAGCACTGCAAGGAAGGCTTCTT-GTGGAATTTCCACGTTGCCCACTTGC 96
Query 139 TTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCA 198
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 95 TTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTTACGTCA 36
Query 199 CCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAG 233
|||||||||||||||||||||||||||||||||||
Sbjct 35 CCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAG 1
>seq2932510
Length=397
Score = 316 bits (350), Expect = 3e-84
Identities = 188/195 (96%), Gaps = 1/195 (1%)
Strand=Plus/Plus
Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 204 TCGAGCAACGCCAGGAAACCACAAACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 263
Query 61 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTTAGTGGAATT 120
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 264 AGCGACATAGGACCTAACTATCCAACCTGAGCACCGCAAGGAAGGCTTCTT-GTGGAATT 322
Query 121 TCCACGTTGCCCACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTG 180
||||| ||||||||| |||||||||||||||||||||||||||||||||||||||| |||
Sbjct 323 TCCACATTGCCCACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGTTTG 382
Query 181 CGCTTACGGCTTACG 195
||||||||||| |||
Sbjct 383 CGCTTACGGCTGACG 397
>seq2165847
Length=127
Score = 215 bits (238), Expect = 8e-54
Identities = 122/124 (98%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 171 AAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 127 AAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 68
Query 231 GAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 290
||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 67 GAGTGCCTTGACGGAGGTCCGTGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 8
Query 291 GTCG 294
||||
Sbjct 7 GTCG 4
>seq1299426
Length=120
Score = 212 bits (234), Expect = 1e-52
Identities = 119/120 (99%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 171 AAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 AAGCAGCTTGCGCTTACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCT 60
Query 231 GAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 290
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAGAGCCTTGACGGAGGTCCGTGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGAC 120
>seq2097828
Length=127
Score = 197 bits (218), Expect = 2e-48
Identities = 120/127 (94%), Gaps = 0/127 (0%)
Strand=Plus/Plus
Query 133 ACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTT 192
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1 ACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGTTTGCGCTTACGGCTG 60
Query 193 ACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGC 252
||| | || |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 61 ACGGCGCCACCGTAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGGAGGTCCGC 120
Query 253 GCAATGA 259
|||||||
Sbjct 121 GCAATGA 127
>seq1022538
Length=115
Score = 181 bits (200), Expect = 2e-43
Identities = 109/115 (95%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 133 ACTCGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGCTTGCGCTTACGGCTT 192
||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 115 ACTTGCTTCATGCGTTTTTTACCGGCCTTTTGCTTCTCAAGCAGTTTGCGCTTACGGCTG 56
Query 193 ACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGG 247
||||| || |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 55 ACGTCGCCACCGTAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGGAGG 1
>seq1786120
Length=127
Score = 172 bits (190), Expect = 9e-41
Identities = 104/110 (95%), Gaps = 0/110 (0%)
Strand=Plus/Plus
Query 185 TACGGCTTACGTCACCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGG 244
||||||| ||||| || |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 TACGGCTGACGTCGCCACCGTAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGG 60
Query 245 AGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294
||| ||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 61 AGGGCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCAACGTCG 110
>seq1016374
Length=115
Score = 159 bits (176), Expect = 6e-37
Identities = 93/96 (97%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 199 CCGCCGTAGCATTTGGCCAGTACGTTCTTTCTGAGAGCCTTGACGGAGGTCCGCGCAATG 258
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 3 CCACCGTAGCATTTGGCCAGTACGTTCTTTCTGAGTGCCTTGACGGAGGTCCGCGCAATG 62
Query 259 ATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294
||||||||||||||||||||||||||||| ||||||
Sbjct 63 ATCTGCCCGCCAATGGCGGCCTGGATCGCAACGTCG 98
>seq2587213
Length=178
Score = 129 bits (142), Expect = 1e-27
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60
||||||||||||||||| || || ||||||||||||||||||||||||||||||||||||
Sbjct 81 TCGAGCAACGCCAGGAGTCCGCAAACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 22
Query 61 AGCGACATAGGACCTAACTAT 81
|| ||||||||||||||||||
Sbjct 21 AGTGACATAGGACCTAACTAT 1
>seq1279351
Length=120
Score = 129 bits (142), Expect = 1e-27
Identities = 77/81 (95%), Gaps = 0/81 (0%)
Strand=Plus/Plus
Query 1 TCGAGCAACGCCAGGAGACCACAGACGGCAACGGCGATGACCAGCAACAGCGGGAAATTT 60
|||||||||||||||||||| || |||||||||||||| |||||||||||||||||||||
Sbjct 40 TCGAGCAACGCCAGGAGACCGCAAACGGCAACGGCGATAACCAGCAACAGCGGGAAATTT 99
Query 61 AGCGACATAGGACCTAACTAT 81
|| ||||||||||||||||||
Sbjct 100 AGTGACATAGGACCTAACTAT 120
>seq2628814
Length=184
Score = 113 bits (124), Expect = 7e-23
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Minus
Query 228 TCTGAGAGCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGC 287
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 184 TCTGAGAGCCTTGACGGAGGTCCGTGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGC 125
Query 288 GACGTCG 294
||| |||
Sbjct 124 GACATCG 118
>seq593485
Length=104
Score = 104 bits (114), Expect = 4e-20
Identities = 59/60 (98%), Gaps = 0/60 (0%)
Strand=Plus/Minus
Query 235 GCCTTGACGGAGGTCCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 GCCTTGACGGAGGTCCGTGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 45
>seq2998223
Length=652
Score = 78.8 bits (86), Expect = 2e-12
Identities = 45/46 (98%), Gaps = 0/46 (0%)
Strand=Plus/Plus
Query 249 CCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCGACGTCG 294
||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1 CCGCGCAATGATCTGCCCGCCAATGGCGGCCTGGATCGCAACGTCG 46
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 816419369817
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |