Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002062.1 Length=351 Score E Sequences producing significant alignments: (Bits) Value seq3065924 491 9e-137 seq218967 446 3e-123 seq2493534 226 6e-57 seq3072561 217 3e-54 seq2243577 197 3e-48 seq2689581 194 3e-47 seq2545056 188 1e-45 seq2636063 170 4e-40 seq2388618 156 8e-36 seq2937201 100 6e-19 seq2900025 75.2 2e-11 >seq3065924 Length=1479 Score = 491 bits (544), Expect = 9e-137 Identities = 321/351 (91%), Gaps = 2/351 (1%) Strand=Plus/Minus Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60 ||||| || |||||||||||||||| ||| |||||||||||||||| |||| |||||||| Sbjct 396 ACCAGATCGCCATCGTCGGCGCCGA-TGCTGACCACGGTGCCGGTG-ACCAACGGGGTGA 339 Query 61 TTTCCACCACGTCGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGA 120 |||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| | Sbjct 338 TTTCCACCACGTTGCCGTTCACATAGGCGTCGTCGGTGCTTTCGTTGAAGCGCCCGTAAA 279 Query 121 ACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAGCGCCAGGCCGATCA 180 ||| ||||||||||| ||||| || |||| ||| ||||||||||||||||||||||||| Sbjct 278 GCTCGTACCAGGCCCATACGCCGACGACACCGAGAATGACGATCAGCGCCAGGCCGATCA 219 Query 181 GCATCACTTTGCGTTTGCGCGGGTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTT 240 |||| ||||||||||||||||||||| |||||||||||||||| || |||||| |||| | Sbjct 218 GCATGACTTTGCGTTTGCGCGGGTTGTTGTCTTTGGGTTGTTCAGTTGCGTTGTTGCTGT 159 Query 241 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTGCGTGTTGCGGGGGTGGTCGCGG 300 |||||||||||||||||||||||||||||||||||||||| || || ||||||||||||| Sbjct 158 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTGCGGGTGGCTGGGGTGGTCGCGG 99 Query 301 CCACGCTGTTGGCGTGATACCCGCCACCCAGGGCCTGCATCAATTGAATCG 351 ||||| ||||||||| ||||||||||||||||||||||||||||||||| Sbjct 98 CCACGTTGTTGGCGTCGAACCCGCCACCCAGGGCCTGCATCAATTGAATCG 48 >seq218967 Length=2640 Score = 446 bits (494), Expect = 3e-123 Identities = 315/357 (88%), Gaps = 11/357 (3%) Strand=Plus/Plus Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60 |||||||| |||||||||||||||| ||| |||||| ||||||||| ||||||||||||| Sbjct 896 ACCAGGTCGCCATCGTCGGCGCCGA-TGCTGACCACAGTGCCGGTG-ACCAGCGGGGTGA 953 Query 61 TTTCCACCACGTCGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGA 120 |||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 954 TTTCCACCACGTTGCCGTTCACATAGGCGTCGTCGGTGCTTTCATTGAAGCGCCCGTAGA 1013 Query 121 ACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAGCGCCAGGCCGATCA 180 ||||||||||| |||||||||| || || | || ||||||||||||||||||||||||| Sbjct 1014 ACTCATACCAGCCCCACACGCCGACTACGCCAAGAATGACGATCAGCGCCAGGCCGATCA 1073 Query 181 GCATCACTTTGCGTTTGCGCGGGTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTT 240 |||| ||||||||||||||||||||| | || ||||| ||| || |||||| || ||| Sbjct 1074 GCATGACTTTGCGTTTGCGCGGGTTGTTATC---GGGTTTTTCAGTTGCGTTGCTGTTTT 1130 Query 241 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTGCGTGTTGCGGGG------GTGG 294 ||||||||||||||||||||||||||||||||||||| || || |||||| |||| Sbjct 1131 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTACGGGTGGCGGGGCTGGTCGTGG 1190 Query 295 TCGCGGCCACGCTGTTGGCGTGATACCCGCCACCCAGGGCCTGCATCAATTGAATCG 351 ||||||||||| | | ||||| | ||||||||||| ||||||||||||||||||| Sbjct 1191 TCGCGGCCACGTTATCGGCGTTGAATCCGCCACCCAGTGCCTGCATCAATTGAATCG 1247 >seq2493534 Length=166 Score = 226 bits (250), Expect = 6e-57 Identities = 152/169 (90%), Gaps = 3/169 (2%) Strand=Plus/Plus Query 83 ATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGGCCCACACGCC 142 ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||| Sbjct 1 ATAGGCGTCGTCGGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGCCCCACACGCC 60 Query 143 CACCACACTGAGGATGACGATCAGCGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGG 202 ||||| | || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GACCACGCCAAGAATGACGATCAGCGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGG 120 Query 203 GTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTTCGGCAGTGGCC 251 |||| | || ||||| ||| || |||||| || |||||||||||||| Sbjct 121 GTTGTTATC---GGGTTTTTCAGTTGCGTTGCTGTTTTCGGCAGTGGCC 166 >seq3072561 Length=1703 Score = 217 bits (240), Expect = 3e-54 Identities = 151/169 (89%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60 |||||||| || ||||||||||||| ||| |||||||||||||||| ||||| ||||||| Sbjct 167 ACCAGGTCGCCGTCGTCGGCGCCGA-TGCTGACCACGGTGCCGGTG-ACCAGAGGGGTGA 110 Query 61 TTTCCACCACGTCGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGA 120 |||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||| | Sbjct 109 TTTCCACCACGTTGCCGTTCACATAGGCATCGTCGGTGCTTTCGTTGAAGCGCCCGTAAA 50 Query 121 ACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAGCGC 169 ||||||||||||||||||||| | ||| | ||| || ||||||||||| Sbjct 49 GCTCATACCAGGCCCACACGCCGATCACGCCGAGAATCACGATCAGCGC 1 >seq2243577 Length=131 Score = 197 bits (218), Expect = 3e-48 Identities = 125/133 (94%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 13 TCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGATTTCCACCACGT 72 ||||||||||||| ||| |||||| ||||||||| ||||||||||||||||||||||||| Sbjct 131 TCGTCGGCGCCGA-TGCTGACCACAGTGCCGGTG-ACCAGCGGGGTGATTTCCACCACGT 74 Query 73 CGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGG 132 |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 73 TGCCGTTCACATAGGCGTCGTCGGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGC 14 Query 133 CCCACACGCCCAC 145 |||||||||| || Sbjct 13 CCCACACGCCGAC 1 >seq2689581 Length=194 Score = 194 bits (214), Expect = 3e-47 Identities = 128/142 (90%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 210 TCTTTGGGTTGTTCGGTCGCGTTGGTGCTTTCGGCAGTGGCCATGACAAATACCTCAAAT 269 ||||||||||| || || |||||| ||||||||||||||||||||||||||||||||||| Sbjct 6 TCTTTGGGTTGCTCTGTTGCGTTGTTGCTTTCGGCAGTGGCCATGACAAATACCTCAAAT 65 Query 270 TATTCCGTGCGTGTTGCGGGGGTGGTCGCGGCCACGCTGTTGGCGTGATACCCGCCACCC 329 |||||||||||||| || |||||||| |||||||| | | ||||| |||||||||||| Sbjct 66 TATTCCGTGCGTGTAGCTGGGGTGGTTACGGCCACGTTATCGGCGTTGTACCCGCCACCC 125 Query 330 AGGGCCTGCATCAATTGAATCG 351 ||||| |||||||||||||||| Sbjct 126 AGGGCTTGCATCAATTGAATCG 147 >seq2545056 Length=173 Score = 188 bits (208), Expect = 1e-45 Identities = 144/173 (83%), Gaps = 12/173 (7%) Strand=Plus/Plus Query 107 GAAGCGCCCGTAGAACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAG 166 |||||||||||| | ||||||||||||||||||||| | ||| | ||| || |||||||| Sbjct 1 GAAGCGCCCGTAAAGCTCATACCAGGCCCACACGCCGATCACGCCGAGAATCACGATCAG 60 Query 167 CGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGGGTTGGTG------------TCTTT 214 ||| |||||||||||||| | |||||||||||| |||||| || ||||| Sbjct 61 CGCTAGGCCGATCAGCATGATTTTGCGTTTGCGTGGGTTGCTGTCTTTCTGCTGCTCTTT 120 Query 215 GGGTTGTTCGGTCGCGTTGGTGCTTTCGGCAGTGGCCATGACAAATACCTCAA 267 |||||| || || |||||| ||||||||||||||||||||||||||||||||| Sbjct 121 GGGTTGCTCTGTTGCGTTGTTGCTTTCGGCAGTGGCCATGACAAATACCTCAA 173 >seq2636063 Length=185 Score = 170 bits (188), Expect = 4e-40 Identities = 145/185 (78%), Gaps = 24/185 (13%) Strand=Plus/Plus Query 107 GAAGCGCCCGTAGAACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAG 166 |||||||||||| | ||||||||||||||||||||| | ||| | ||| || |||||||| Sbjct 1 GAAGCGCCCGTAAAGCTCATACCAGGCCCACACGCCGATCACGCCGAGAATCACGATCAG 60 Query 167 CGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGGGTTGGTG----------------- 209 |||||||||||||||||| | |||||||||||| |||||| || Sbjct 61 CGCCAGGCCGATCAGCATGATTTTGCGTTTGCGTGGGTTGCTGTCTTTCTGCTGCTCTTT 120 Query 210 -------TCTTTGGGTTGTTCGGTCGCGTTGGTGCTTTCGGCAGTGGCCATGACAAATAC 262 ||||||||||| || || |||||| |||||||||||||||||||||||||||| Sbjct 121 AGGCTGCTCTTTGGGTTGCTCTGTTGCGTTGTTGCTTTCGGCAGTGGCCATGACAAATAC 180 Query 263 CTCAA 267 ||||| Sbjct 181 CTCAA 185 >seq2388618 Length=149 Score = 156 bits (172), Expect = 8e-36 Identities = 126/152 (83%), Gaps = 9/152 (6%) Strand=Plus/Minus Query 186 ACTTTGCGTTTGCGCGGGTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTTCGGCA 245 ||||||||||||||||||||| | || ||||| ||| || |||||| || |||||||| Sbjct 149 ACTTTGCGTTTGCGCGGGTTGTTATC---GGGTTTTTCAGTTGCGTTGCTGTTTTCGGCA 93 Query 246 GTGGCCATGACAAATACCTCAAATTATTCCGTGCGTGTTGCGGGG------GTGGTCGCG 299 |||||||||||||||||||||||||||||||| || || |||||| ||||||||| Sbjct 92 GTGGCCATGACAAATACCTCAAATTATTCCGTACGGGTGGCGGGGCTGGTCGTGGTCGCG 33 Query 300 GCCACGCTGTTGGCGTGATACCCGCCACCCAG 331 |||||| | | ||||| | ||||||||||| Sbjct 32 GCCACGTTATCGGCGTTGAATCCGCCACCCAG 1 >seq2937201 Length=409 Score = 100 bits (110), Expect = 6e-19 Identities = 70/77 (91%), Gaps = 2/77 (3%) Strand=Plus/Plus Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60 |||||||| || ||||||||||||| ||| |||||| ||||||||| ||||||||||||| Sbjct 335 ACCAGGTCGCCGTCGTCGGCGCCGA-TGCTGACCACAGTGCCGGTG-ACCAGCGGGGTGA 392 Query 61 TTTCCACCACGTCGCCG 77 |||||||||||| |||| Sbjct 393 TTTCCACCACGTTGCCG 409 >seq2900025 Length=331 Score = 75.2 bits (82), Expect = 2e-11 Identities = 53/61 (87%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 291 GTGGTCGCGGCCACGCTGTTGGCGTGATACCCGCCACCCAGGGCCTGCATCAATTGAATC 350 ||||||||||||||| | | ||||| | |||||||||||||| ||||||||||||||| Sbjct 23 GTGGTCGCGGCCACGTTATCGGCGTTGAATCCGCCACCCAGGGCTTGCATCAATTGAATC 82 Query 351 G 351 | Sbjct 83 G 83 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989272479712