Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002062.1
Length=351
Score E
Sequences producing significant alignments: (Bits) Value
seq3065924 491 9e-137
seq218967 446 3e-123
seq2493534 226 6e-57
seq3072561 217 3e-54
seq2243577 197 3e-48
seq2689581 194 3e-47
seq2545056 188 1e-45
seq2636063 170 4e-40
seq2388618 156 8e-36
seq2937201 100 6e-19
seq2900025 75.2 2e-11
>seq3065924
Length=1479
Score = 491 bits (544), Expect = 9e-137
Identities = 321/351 (91%), Gaps = 2/351 (1%)
Strand=Plus/Minus
Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60
||||| || |||||||||||||||| ||| |||||||||||||||| |||| ||||||||
Sbjct 396 ACCAGATCGCCATCGTCGGCGCCGA-TGCTGACCACGGTGCCGGTG-ACCAACGGGGTGA 339
Query 61 TTTCCACCACGTCGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGA 120
|||||||||||| |||||||||||||||||| ||||||||||| |||||||||||||| |
Sbjct 338 TTTCCACCACGTTGCCGTTCACATAGGCGTCGTCGGTGCTTTCGTTGAAGCGCCCGTAAA 279
Query 121 ACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAGCGCCAGGCCGATCA 180
||| ||||||||||| ||||| || |||| ||| |||||||||||||||||||||||||
Sbjct 278 GCTCGTACCAGGCCCATACGCCGACGACACCGAGAATGACGATCAGCGCCAGGCCGATCA 219
Query 181 GCATCACTTTGCGTTTGCGCGGGTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTT 240
|||| ||||||||||||||||||||| |||||||||||||||| || |||||| |||| |
Sbjct 218 GCATGACTTTGCGTTTGCGCGGGTTGTTGTCTTTGGGTTGTTCAGTTGCGTTGTTGCTGT 159
Query 241 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTGCGTGTTGCGGGGGTGGTCGCGG 300
|||||||||||||||||||||||||||||||||||||||| || || |||||||||||||
Sbjct 158 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTGCGGGTGGCTGGGGTGGTCGCGG 99
Query 301 CCACGCTGTTGGCGTGATACCCGCCACCCAGGGCCTGCATCAATTGAATCG 351
||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 98 CCACGTTGTTGGCGTCGAACCCGCCACCCAGGGCCTGCATCAATTGAATCG 48
>seq218967
Length=2640
Score = 446 bits (494), Expect = 3e-123
Identities = 315/357 (88%), Gaps = 11/357 (3%)
Strand=Plus/Plus
Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60
|||||||| |||||||||||||||| ||| |||||| ||||||||| |||||||||||||
Sbjct 896 ACCAGGTCGCCATCGTCGGCGCCGA-TGCTGACCACAGTGCCGGTG-ACCAGCGGGGTGA 953
Query 61 TTTCCACCACGTCGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGA 120
|||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 954 TTTCCACCACGTTGCCGTTCACATAGGCGTCGTCGGTGCTTTCATTGAAGCGCCCGTAGA 1013
Query 121 ACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAGCGCCAGGCCGATCA 180
||||||||||| |||||||||| || || | || |||||||||||||||||||||||||
Sbjct 1014 ACTCATACCAGCCCCACACGCCGACTACGCCAAGAATGACGATCAGCGCCAGGCCGATCA 1073
Query 181 GCATCACTTTGCGTTTGCGCGGGTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTT 240
|||| ||||||||||||||||||||| | || ||||| ||| || |||||| || |||
Sbjct 1074 GCATGACTTTGCGTTTGCGCGGGTTGTTATC---GGGTTTTTCAGTTGCGTTGCTGTTTT 1130
Query 241 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTGCGTGTTGCGGGG------GTGG 294
||||||||||||||||||||||||||||||||||||| || || |||||| ||||
Sbjct 1131 CGGCAGTGGCCATGACAAATACCTCAAATTATTCCGTACGGGTGGCGGGGCTGGTCGTGG 1190
Query 295 TCGCGGCCACGCTGTTGGCGTGATACCCGCCACCCAGGGCCTGCATCAATTGAATCG 351
||||||||||| | | ||||| | ||||||||||| |||||||||||||||||||
Sbjct 1191 TCGCGGCCACGTTATCGGCGTTGAATCCGCCACCCAGTGCCTGCATCAATTGAATCG 1247
>seq2493534
Length=166
Score = 226 bits (250), Expect = 6e-57
Identities = 152/169 (90%), Gaps = 3/169 (2%)
Strand=Plus/Plus
Query 83 ATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGGCCCACACGCC 142
||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1 ATAGGCGTCGTCGGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGCCCCACACGCC 60
Query 143 CACCACACTGAGGATGACGATCAGCGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGG 202
||||| | || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GACCACGCCAAGAATGACGATCAGCGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGG 120
Query 203 GTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTTCGGCAGTGGCC 251
|||| | || ||||| ||| || |||||| || ||||||||||||||
Sbjct 121 GTTGTTATC---GGGTTTTTCAGTTGCGTTGCTGTTTTCGGCAGTGGCC 166
>seq3072561
Length=1703
Score = 217 bits (240), Expect = 3e-54
Identities = 151/169 (89%), Gaps = 2/169 (1%)
Strand=Plus/Minus
Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60
|||||||| || ||||||||||||| ||| |||||||||||||||| ||||| |||||||
Sbjct 167 ACCAGGTCGCCGTCGTCGGCGCCGA-TGCTGACCACGGTGCCGGTG-ACCAGAGGGGTGA 110
Query 61 TTTCCACCACGTCGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGA 120
|||||||||||| ||||||||||||||| || ||||||||||| |||||||||||||| |
Sbjct 109 TTTCCACCACGTTGCCGTTCACATAGGCATCGTCGGTGCTTTCGTTGAAGCGCCCGTAAA 50
Query 121 ACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAGCGC 169
||||||||||||||||||||| | ||| | ||| || |||||||||||
Sbjct 49 GCTCATACCAGGCCCACACGCCGATCACGCCGAGAATCACGATCAGCGC 1
>seq2243577
Length=131
Score = 197 bits (218), Expect = 3e-48
Identities = 125/133 (94%), Gaps = 2/133 (2%)
Strand=Plus/Minus
Query 13 TCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGATTTCCACCACGT 72
||||||||||||| ||| |||||| ||||||||| |||||||||||||||||||||||||
Sbjct 131 TCGTCGGCGCCGA-TGCTGACCACAGTGCCGGTG-ACCAGCGGGGTGATTTCCACCACGT 74
Query 73 CGCCGTTCACATAGGCGTCATCGGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGG 132
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 73 TGCCGTTCACATAGGCGTCGTCGGTGCTTTCATTGAAGCGCCCGTAGAACTCATACCAGC 14
Query 133 CCCACACGCCCAC 145
|||||||||| ||
Sbjct 13 CCCACACGCCGAC 1
>seq2689581
Length=194
Score = 194 bits (214), Expect = 3e-47
Identities = 128/142 (90%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 210 TCTTTGGGTTGTTCGGTCGCGTTGGTGCTTTCGGCAGTGGCCATGACAAATACCTCAAAT 269
||||||||||| || || |||||| |||||||||||||||||||||||||||||||||||
Sbjct 6 TCTTTGGGTTGCTCTGTTGCGTTGTTGCTTTCGGCAGTGGCCATGACAAATACCTCAAAT 65
Query 270 TATTCCGTGCGTGTTGCGGGGGTGGTCGCGGCCACGCTGTTGGCGTGATACCCGCCACCC 329
|||||||||||||| || |||||||| |||||||| | | ||||| ||||||||||||
Sbjct 66 TATTCCGTGCGTGTAGCTGGGGTGGTTACGGCCACGTTATCGGCGTTGTACCCGCCACCC 125
Query 330 AGGGCCTGCATCAATTGAATCG 351
||||| ||||||||||||||||
Sbjct 126 AGGGCTTGCATCAATTGAATCG 147
>seq2545056
Length=173
Score = 188 bits (208), Expect = 1e-45
Identities = 144/173 (83%), Gaps = 12/173 (7%)
Strand=Plus/Plus
Query 107 GAAGCGCCCGTAGAACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAG 166
|||||||||||| | ||||||||||||||||||||| | ||| | ||| || ||||||||
Sbjct 1 GAAGCGCCCGTAAAGCTCATACCAGGCCCACACGCCGATCACGCCGAGAATCACGATCAG 60
Query 167 CGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGGGTTGGTG------------TCTTT 214
||| |||||||||||||| | |||||||||||| |||||| || |||||
Sbjct 61 CGCTAGGCCGATCAGCATGATTTTGCGTTTGCGTGGGTTGCTGTCTTTCTGCTGCTCTTT 120
Query 215 GGGTTGTTCGGTCGCGTTGGTGCTTTCGGCAGTGGCCATGACAAATACCTCAA 267
|||||| || || |||||| |||||||||||||||||||||||||||||||||
Sbjct 121 GGGTTGCTCTGTTGCGTTGTTGCTTTCGGCAGTGGCCATGACAAATACCTCAA 173
>seq2636063
Length=185
Score = 170 bits (188), Expect = 4e-40
Identities = 145/185 (78%), Gaps = 24/185 (13%)
Strand=Plus/Plus
Query 107 GAAGCGCCCGTAGAACTCATACCAGGCCCACACGCCCACCACACTGAGGATGACGATCAG 166
|||||||||||| | ||||||||||||||||||||| | ||| | ||| || ||||||||
Sbjct 1 GAAGCGCCCGTAAAGCTCATACCAGGCCCACACGCCGATCACGCCGAGAATCACGATCAG 60
Query 167 CGCCAGGCCGATCAGCATCACTTTGCGTTTGCGCGGGTTGGTG----------------- 209
|||||||||||||||||| | |||||||||||| |||||| ||
Sbjct 61 CGCCAGGCCGATCAGCATGATTTTGCGTTTGCGTGGGTTGCTGTCTTTCTGCTGCTCTTT 120
Query 210 -------TCTTTGGGTTGTTCGGTCGCGTTGGTGCTTTCGGCAGTGGCCATGACAAATAC 262
||||||||||| || || |||||| ||||||||||||||||||||||||||||
Sbjct 121 AGGCTGCTCTTTGGGTTGCTCTGTTGCGTTGTTGCTTTCGGCAGTGGCCATGACAAATAC 180
Query 263 CTCAA 267
|||||
Sbjct 181 CTCAA 185
>seq2388618
Length=149
Score = 156 bits (172), Expect = 8e-36
Identities = 126/152 (83%), Gaps = 9/152 (6%)
Strand=Plus/Minus
Query 186 ACTTTGCGTTTGCGCGGGTTGGTGTCTTTGGGTTGTTCGGTCGCGTTGGTGCTTTCGGCA 245
||||||||||||||||||||| | || ||||| ||| || |||||| || ||||||||
Sbjct 149 ACTTTGCGTTTGCGCGGGTTGTTATC---GGGTTTTTCAGTTGCGTTGCTGTTTTCGGCA 93
Query 246 GTGGCCATGACAAATACCTCAAATTATTCCGTGCGTGTTGCGGGG------GTGGTCGCG 299
|||||||||||||||||||||||||||||||| || || |||||| |||||||||
Sbjct 92 GTGGCCATGACAAATACCTCAAATTATTCCGTACGGGTGGCGGGGCTGGTCGTGGTCGCG 33
Query 300 GCCACGCTGTTGGCGTGATACCCGCCACCCAG 331
|||||| | | ||||| | |||||||||||
Sbjct 32 GCCACGTTATCGGCGTTGAATCCGCCACCCAG 1
>seq2937201
Length=409
Score = 100 bits (110), Expect = 6e-19
Identities = 70/77 (91%), Gaps = 2/77 (3%)
Strand=Plus/Plus
Query 1 ACCAGGTCACCATCGTCGGCGCCGAATGCCGACCACGGTGCCGGTGTACCAGCGGGGTGA 60
|||||||| || ||||||||||||| ||| |||||| ||||||||| |||||||||||||
Sbjct 335 ACCAGGTCGCCGTCGTCGGCGCCGA-TGCTGACCACAGTGCCGGTG-ACCAGCGGGGTGA 392
Query 61 TTTCCACCACGTCGCCG 77
|||||||||||| ||||
Sbjct 393 TTTCCACCACGTTGCCG 409
>seq2900025
Length=331
Score = 75.2 bits (82), Expect = 2e-11
Identities = 53/61 (87%), Gaps = 0/61 (0%)
Strand=Plus/Plus
Query 291 GTGGTCGCGGCCACGCTGTTGGCGTGATACCCGCCACCCAGGGCCTGCATCAATTGAATC 350
||||||||||||||| | | ||||| | |||||||||||||| |||||||||||||||
Sbjct 23 GTGGTCGCGGCCACGTTATCGGCGTTGAATCCGCCACCCAGGGCTTGCATCAATTGAATC 82
Query 351 G 351
|
Sbjct 83 G 83
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989272479712
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |