Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002083.1 Length=362 Score E Sequences producing significant alignments: (Bits) Value seq339953 260 3e-67 seq2967597 205 2e-50 seq77541 181 2e-43 seq2885729 150 4e-34 seq3028177 116 8e-24 >seq339953 Length=788 Score = 260 bits (288), Expect = 3e-67 Identities = 279/364 (77%), Gaps = 6/364 (2%) Strand=Plus/Minus Query 2 GAGGCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGC 61 ||||||||||| || || || || ||| ||||| || |||| ||||| ||||||||| Sbjct 440 GAGGCCAGCGATGAAGCCCGCACCACCCACTGGCGTTGCGGCAGCGACATCGCCCACAGC 381 Query 62 TTGCAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGC 121 ||||||| ||||||||||| ||||| ||||||||||||| ||| || ||||||||||| Sbjct 380 CTGCAGGTGGCTGGGTTCAAAGGCCGGTTCCAGATGCTCACCGATCCGCTGTGCATGGGG 321 Query 122 CCCGTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAG 181 || || || | |||||| ||| || ||||||| |||||||||| |||||||||||| Sbjct 320 CCGGTGCGTGACCTTCCCGGCGACGCATTCCGCGCGATGCGCAGCGCGTTTATCAGCCAG 261 Query 182 ACTTTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAA-TT 240 | || ||| || ||| | || || | |||| | ||| |||||| ||| || Sbjct 260 GCCTTCGCCCTGGACCCCACCGAAGTCGCGCGGCGCATCAACGATGAATACCACCAGCTT 201 Query 241 GGACGCACTGGCCGGCGCCGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCA 300 ||| || |||||| |||||| || |||||| |||||||||| ||||||||||| ||||| Sbjct 200 GGA-GCCTTGGCCGACGCCGATCACAGCGTGCTGTGGTGTGAGGCGGATGCCTACGACCA 142 Query 301 ATTGTTCCTGATTCGCGCACTCTCAAGTCTTGA--ACGCACGCCGAAAAAACTTGAGCTG 358 | |||||||||| ||||| | | | ||||| | |||| || || ||||||||| Sbjct 141 ACTGTTCCTGATCCGCGCGTTGGCCGGGCTTGAGCAGGCACCACG--CAAGCTTGAGCTG 84 Query 359 ATCG 362 |||| Sbjct 83 ATCG 80 >seq2967597 Length=506 Score = 205 bits (226), Expect = 2e-50 Identities = 227/303 (75%), Gaps = 0/303 (0%) Strand=Plus/Plus Query 4 GGCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGCTT 63 ||||||||| || || || || ||| |||||||| |||| |||||| ||||||||| | Sbjct 203 GGCCAGCGATGAAGCCCGCACCACCCACTGGCGCTGCGGCAGTGACATCGCCCACAGCCT 262 Query 64 GCAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGCCC 123 ||| | || ||||||| ||| | |||| ||||||| ||| ||| |||||||||| || Sbjct 263 GCAACTGGCCGGGTTCAGGGGGCAGTTCCGCATGCTCACCGATCCATTGTGCATGGGGCC 322 Query 124 CGTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAGAC 183 || ||| | || ||||| | || |||||| ||||||| || |||||||||||| | Sbjct 323 GGTGCGCGACCTGCCCAGTGAAGATTTCCGCGCGATGCGCAGTGCCTTTATCAGCCAGGC 382 Query 184 TTTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAATTGGA 243 ||||| || | ||||||| || | ||||| || || ||| ||| || | Sbjct 383 CTTTGCGCTGGACGCTGCTGAAGTCGCGCACCGCGTCAACACCGAGTACGACCACCTGCA 442 Query 244 CGCACTGGCCGGCGCCGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCAATT 303 ||| |||||| ||||||| || |||||| ||||||| |||||||| |||||||| || | Sbjct 443 CGCCCTGGCCAGCGCCGATCACAGCGTGCTGTGGTGCGAAGCGGACGCCTATGATCAGCT 502 Query 304 GTT 306 ||| Sbjct 503 GTT 505 >seq77541 Length=5882 Score = 181 bits (200), Expect = 2e-43 Identities = 275/404 (68%), Gaps = 47/404 (12%) Strand=Plus/Minus Query 5 GCCAGCGACGAGGCACGTACTCAC-CATTGGCGCTGTGGCAATGACATTGCCCACAGCTT 63 |||||||| || || || || ||| || ||||||||||||| |||||||||||| ||| | Sbjct 3591 GCCAGCGATGAAGCCCGCAC-CACGCACTGGCGCTGTGGCAGTGACATTGCCCATAGCCT 3533 Query 64 GCAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGCCC 123 ||| | || ||||||||||| | |||| ||||||| ||| ||| |||||||||| || Sbjct 3532 GCAACTGGCCGGGTTCAAGGGGCAGTTCCGCATGCTCACCGATCCATTGTGCATGGGGCC 3473 Query 124 CGTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAGAC 183 || ||| || | ||||| | || |||||| ||||||| || |||||||||||| | Sbjct 3472 GGTGCGCGATTTGCCCAGTGAAGATTTCCGCGCGATGCGCAGTGCCTTTATCAGCCAGGC 3413 Query 184 TTTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAATTGGA 243 |||||| || | ||||||| |||| || ||||| || | ||||||| ||| || | Sbjct 3412 CTTTGCCCTGGACGCTGCTGAAGTAACCCACCGCGTCGATGATGAATACAACCACCTGCA 3353 Query 244 ---------------------------------------------CGCACTGGCCGGCGC 258 |||| |||| Sbjct 3352 ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAGCGC 3293 Query 259 CGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCAATTGTTCCTGATTCGCGC 318 ||| || |||||| ||||||| |||||||| |||||||| || |||| ||| | ||||| Sbjct 3292 CGATCACAGCGTGCTGTGGTGCGAAGCGGACGCCTATGATCAGCTGTTTCTGGTGCGCGC 3233 Query 319 ACTCTCAAGTCTTGAACGCACGCCGAAAAAACTTGAGCTGATCG 362 || | ||||||| || |||||||||| || |||||||||| Sbjct 3232 GCTGGCCGGTCTTGAGCGTGCGCCGAAAAAGCTGGAGCTGATCG 3189 >seq2885729 Length=309 Score = 150 bits (166), Expect = 4e-34 Identities = 153/198 (77%), Gaps = 1/198 (1%) Strand=Plus/Plus Query 2 GAGGCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGC 61 |||||||| || || || || || ||| ||||| || |||| ||||||||||||| | Sbjct 94 GAGGCCAGTGATGAAGCCCGCACCACCCACTGGCGTTGCGGCAGCGACATTGCCCACACC 153 Query 62 TTGCAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGC 121 ||||||| || |||||||| |||| ||||||||||||| ||| || ||||||||||| Sbjct 154 CTGCAGGTGGCGGGGTTCAAAGGCCAGTTCCAGATGCTCACCGATCCGCTGTGCATGGGG 213 Query 122 CCCGTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAG 181 || || || | || ||| ||| || ||||| |||||||||| |||||||||||| Sbjct 214 CCGGTGCGTGAGCTCCCCGGCGACGCGTTCCGTGCGATGCGCAGCGCGTTTATCAGCCAG 273 Query 182 ACTTTTG-CCTTGACCCC 198 | || | ||| |||||| Sbjct 274 GCCTTCGCCCTGGACCCC 291 >seq3028177 Length=876 Score = 116 bits (128), Expect = 8e-24 Identities = 148/204 (73%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 159 TGCGCAGCGCTTTTATCAGCCAGACTTTTGCCTTGACCCCTGCTGATGTAAACCTGCGCG 218 |||||||||| |||||||||||| | || ||| || ||| | || || | |||| Sbjct 872 TGCGCAGCGCGTTTATCAGCCAGGCCTTCGCCCTGGACCCCACCGAAGTCGCGCGGCGCA 813 Query 219 TTGACGGGGAATACACCCAATTGGACGCACTGGCCGGCGCCGAACATAGCGTGTTGTGGT 278 | | |||||| ||| | || ||| |||||| ||||||||| |||||| |||||| Sbjct 812 TCAGTGATGAATACCACCAGCTTGAGGCATTGGCCGACGCCGAACACAGCGTGCTGTGGT 753 Query 279 GTGAAGCGGATGCCTATGACCAATTGTTCCTGATTCGCGCACTCTCAAGTCTTGAACGCA 338 | || ||||||||||||||||| |||||||||| || || | | | ||||| | Sbjct 752 GCGAGGCGGATGCCTATGACCAGCTGTTCCTGATCCGTGCGTTGGCCGGGCTTGAGCAGG 693 Query 339 CGCCGAAAAAACTTGAGCTGATCG 362 | ||| || || |||||||||| Sbjct 692 CACCGCGCAAGCTCGAGCTGATCG 669 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1023385323840