Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002083.1
Length=362
Score E
Sequences producing significant alignments: (Bits) Value
seq339953 260 3e-67
seq2967597 205 2e-50
seq77541 181 2e-43
seq2885729 150 4e-34
seq3028177 116 8e-24
>seq339953
Length=788
Score = 260 bits (288), Expect = 3e-67
Identities = 279/364 (77%), Gaps = 6/364 (2%)
Strand=Plus/Minus
Query 2 GAGGCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGC 61
||||||||||| || || || || ||| ||||| || |||| ||||| |||||||||
Sbjct 440 GAGGCCAGCGATGAAGCCCGCACCACCCACTGGCGTTGCGGCAGCGACATCGCCCACAGC 381
Query 62 TTGCAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGC 121
||||||| ||||||||||| ||||| ||||||||||||| ||| || |||||||||||
Sbjct 380 CTGCAGGTGGCTGGGTTCAAAGGCCGGTTCCAGATGCTCACCGATCCGCTGTGCATGGGG 321
Query 122 CCCGTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAG 181
|| || || | |||||| ||| || ||||||| |||||||||| ||||||||||||
Sbjct 320 CCGGTGCGTGACCTTCCCGGCGACGCATTCCGCGCGATGCGCAGCGCGTTTATCAGCCAG 261
Query 182 ACTTTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAA-TT 240
| || ||| || ||| | || || | |||| | ||| |||||| ||| ||
Sbjct 260 GCCTTCGCCCTGGACCCCACCGAAGTCGCGCGGCGCATCAACGATGAATACCACCAGCTT 201
Query 241 GGACGCACTGGCCGGCGCCGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCA 300
||| || |||||| |||||| || |||||| |||||||||| ||||||||||| |||||
Sbjct 200 GGA-GCCTTGGCCGACGCCGATCACAGCGTGCTGTGGTGTGAGGCGGATGCCTACGACCA 142
Query 301 ATTGTTCCTGATTCGCGCACTCTCAAGTCTTGA--ACGCACGCCGAAAAAACTTGAGCTG 358
| |||||||||| ||||| | | | ||||| | |||| || || |||||||||
Sbjct 141 ACTGTTCCTGATCCGCGCGTTGGCCGGGCTTGAGCAGGCACCACG--CAAGCTTGAGCTG 84
Query 359 ATCG 362
||||
Sbjct 83 ATCG 80
>seq2967597
Length=506
Score = 205 bits (226), Expect = 2e-50
Identities = 227/303 (75%), Gaps = 0/303 (0%)
Strand=Plus/Plus
Query 4 GGCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGCTT 63
||||||||| || || || || ||| |||||||| |||| |||||| ||||||||| |
Sbjct 203 GGCCAGCGATGAAGCCCGCACCACCCACTGGCGCTGCGGCAGTGACATCGCCCACAGCCT 262
Query 64 GCAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGCCC 123
||| | || ||||||| ||| | |||| ||||||| ||| ||| |||||||||| ||
Sbjct 263 GCAACTGGCCGGGTTCAGGGGGCAGTTCCGCATGCTCACCGATCCATTGTGCATGGGGCC 322
Query 124 CGTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAGAC 183
|| ||| | || ||||| | || |||||| ||||||| || |||||||||||| |
Sbjct 323 GGTGCGCGACCTGCCCAGTGAAGATTTCCGCGCGATGCGCAGTGCCTTTATCAGCCAGGC 382
Query 184 TTTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAATTGGA 243
||||| || | ||||||| || | ||||| || || ||| ||| || |
Sbjct 383 CTTTGCGCTGGACGCTGCTGAAGTCGCGCACCGCGTCAACACCGAGTACGACCACCTGCA 442
Query 244 CGCACTGGCCGGCGCCGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCAATT 303
||| |||||| ||||||| || |||||| ||||||| |||||||| |||||||| || |
Sbjct 443 CGCCCTGGCCAGCGCCGATCACAGCGTGCTGTGGTGCGAAGCGGACGCCTATGATCAGCT 502
Query 304 GTT 306
|||
Sbjct 503 GTT 505
>seq77541
Length=5882
Score = 181 bits (200), Expect = 2e-43
Identities = 275/404 (68%), Gaps = 47/404 (12%)
Strand=Plus/Minus
Query 5 GCCAGCGACGAGGCACGTACTCAC-CATTGGCGCTGTGGCAATGACATTGCCCACAGCTT 63
|||||||| || || || || ||| || ||||||||||||| |||||||||||| ||| |
Sbjct 3591 GCCAGCGATGAAGCCCGCAC-CACGCACTGGCGCTGTGGCAGTGACATTGCCCATAGCCT 3533
Query 64 GCAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGCCC 123
||| | || ||||||||||| | |||| ||||||| ||| ||| |||||||||| ||
Sbjct 3532 GCAACTGGCCGGGTTCAAGGGGCAGTTCCGCATGCTCACCGATCCATTGTGCATGGGGCC 3473
Query 124 CGTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAGAC 183
|| ||| || | ||||| | || |||||| ||||||| || |||||||||||| |
Sbjct 3472 GGTGCGCGATTTGCCCAGTGAAGATTTCCGCGCGATGCGCAGTGCCTTTATCAGCCAGGC 3413
Query 184 TTTTGCCTTGACCCCTGCTGATGTAAACCTGCGCGTTGACGGGGAATACACCCAATTGGA 243
|||||| || | ||||||| |||| || ||||| || | ||||||| ||| || |
Sbjct 3412 CTTTGCCCTGGACGCTGCTGAAGTAACCCACCGCGTCGATGATGAATACAACCACCTGCA 3353
Query 244 ---------------------------------------------CGCACTGGCCGGCGC 258
|||| ||||
Sbjct 3352 ANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGGCCAGCGC 3293
Query 259 CGAACATAGCGTGTTGTGGTGTGAAGCGGATGCCTATGACCAATTGTTCCTGATTCGCGC 318
||| || |||||| ||||||| |||||||| |||||||| || |||| ||| | |||||
Sbjct 3292 CGATCACAGCGTGCTGTGGTGCGAAGCGGACGCCTATGATCAGCTGTTTCTGGTGCGCGC 3233
Query 319 ACTCTCAAGTCTTGAACGCACGCCGAAAAAACTTGAGCTGATCG 362
|| | ||||||| || |||||||||| || ||||||||||
Sbjct 3232 GCTGGCCGGTCTTGAGCGTGCGCCGAAAAAGCTGGAGCTGATCG 3189
>seq2885729
Length=309
Score = 150 bits (166), Expect = 4e-34
Identities = 153/198 (77%), Gaps = 1/198 (1%)
Strand=Plus/Plus
Query 2 GAGGCCAGCGACGAGGCACGTACTCACCATTGGCGCTGTGGCAATGACATTGCCCACAGC 61
|||||||| || || || || || ||| ||||| || |||| ||||||||||||| |
Sbjct 94 GAGGCCAGTGATGAAGCCCGCACCACCCACTGGCGTTGCGGCAGCGACATTGCCCACACC 153
Query 62 TTGCAGGTAGCTGGGTTCAAGGGCCGCTTCCAGATGCTCAGCGACCCACTGTGCATGGGC 121
||||||| || |||||||| |||| ||||||||||||| ||| || |||||||||||
Sbjct 154 CTGCAGGTGGCGGGGTTCAAAGGCCAGTTCCAGATGCTCACCGATCCGCTGTGCATGGGG 213
Query 122 CCCGTACGCAATCTTCCCAGCGCCGAATTCCGCCGCCTGCGCAGCGCTTTTATCAGCCAG 181
|| || || | || ||| ||| || ||||| |||||||||| ||||||||||||
Sbjct 214 CCGGTGCGTGAGCTCCCCGGCGACGCGTTCCGTGCGATGCGCAGCGCGTTTATCAGCCAG 273
Query 182 ACTTTTG-CCTTGACCCC 198
| || | ||| ||||||
Sbjct 274 GCCTTCGCCCTGGACCCC 291
>seq3028177
Length=876
Score = 116 bits (128), Expect = 8e-24
Identities = 148/204 (73%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 159 TGCGCAGCGCTTTTATCAGCCAGACTTTTGCCTTGACCCCTGCTGATGTAAACCTGCGCG 218
|||||||||| |||||||||||| | || ||| || ||| | || || | ||||
Sbjct 872 TGCGCAGCGCGTTTATCAGCCAGGCCTTCGCCCTGGACCCCACCGAAGTCGCGCGGCGCA 813
Query 219 TTGACGGGGAATACACCCAATTGGACGCACTGGCCGGCGCCGAACATAGCGTGTTGTGGT 278
| | |||||| ||| | || ||| |||||| ||||||||| |||||| ||||||
Sbjct 812 TCAGTGATGAATACCACCAGCTTGAGGCATTGGCCGACGCCGAACACAGCGTGCTGTGGT 753
Query 279 GTGAAGCGGATGCCTATGACCAATTGTTCCTGATTCGCGCACTCTCAAGTCTTGAACGCA 338
| || ||||||||||||||||| |||||||||| || || | | | ||||| |
Sbjct 752 GCGAGGCGGATGCCTATGACCAGCTGTTCCTGATCCGTGCGTTGGCCGGGCTTGAGCAGG 693
Query 339 CGCCGAAAAAACTTGAGCTGATCG 362
| ||| || || ||||||||||
Sbjct 692 CACCGCGCAAGCTCGAGCTGATCG 669
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1023385323840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |