Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002094.1 Length=130 Score E Sequences producing significant alignments: (Bits) Value seq108525 165 5e-39 seq3056479 161 6e-38 seq338812 131 1e-28 >seq108525 Length=7026 Score = 165 bits (182), Expect = 5e-39 Identities = 114/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 2 ccccccGACCTTAGTGATCACGCCGTTCCCGTGCAGCCGTTGGCGCGTACCTACCCGCGT 61 || |||||||| | |||||| ||||| |||||||| ||| ||||||| |||||||||||| Sbjct 6607 CCTCCCGACCTCACTGATCATGCCGTCCCCGTGCAACCGCTGGCGCGGACCTACCCGCGT 6666 Query 62 GGGTTGTACGTAGAACCGCACAGCCACGATTGGGGCCAGTTGCTCTACGCCATGAGCGGT 121 |||||||| || || || ||||||||||| |||||||||||||||||||| |||||||| Sbjct 6667 GGGTTGTATGTGGAGCCACACAGCCACGACTGGGGCCAGTTGCTCTACGCAATGAGCGGG 6726 Query 122 GTGATGTGG 130 ||||||||| Sbjct 6727 GTGATGTGG 6735 >seq3056479 Length=1260 Score = 161 bits (178), Expect = 6e-38 Identities = 113/129 (88%), Gaps = 0/129 (0%) Strand=Plus/Minus Query 2 ccccccGACCTTAGTGATCACGCCGTTCCCGTGCAGCCGTTGGCGCGTACCTACCCGCGT 61 || |||||||| | |||||| || || |||||||| ||| ||||||| ||||| |||||| Sbjct 420 CCTCCCGACCTCACTGATCATGCTGTGCCCGTGCAACCGCTGGCGCGCACCTATCCGCGT 361 Query 62 GGGTTGTACGTAGAACCGCACAGCCACGATTGGGGCCAGTTGCTCTACGCCATGAGCGGT 121 |||||||| || ||||| || |||||||| ||||||||||||||||||||||||||||| Sbjct 360 GGGTTGTATGTGGAACCCCATAGCCACGACTGGGGCCAGTTGCTCTACGCCATGAGCGGG 301 Query 122 GTGATGTGG 130 ||||||||| Sbjct 300 GTGATGTGG 292 >seq338812 Length=834 Score = 131 bits (144), Expect = 1e-28 Identities = 81/87 (93%), Gaps = 0/87 (0%) Strand=Plus/Minus Query 2 ccccccGACCTTAGTGATCACGCCGTTCCCGTGCAGCCGTTGGCGCGTACCTACCCGCGT 61 ||||||||||| |||||||||||||| |||||||| || |||||||| |||||||||||| Sbjct 87 CCCCCCGACCTCAGTGATCACGCCGTGCCCGTGCAACCCTTGGCGCGCACCTACCCGCGT 28 Query 62 GGGTTGTACGTAGAACCGCACAGCCAC 88 |||||||| |||||||||||||||||| Sbjct 27 GGGTTGTATGTAGAACCGCACAGCCAC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 310734467000