Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002120.1 Length=347 Score E Sequences producing significant alignments: (Bits) Value seq209779 389 8e-106 seq2930929 383 3e-104 seq3087644 307 2e-81 seq2773963 288 2e-75 seq2875751 161 2e-37 seq3022932 154 3e-35 seq2488684 80.6 5e-13 seq2488683 80.6 5e-13 >seq209779 Length=2078 Score = 389 bits (430), Expect = 8e-106 Identities = 259/288 (90%), Gaps = 0/288 (0%) Strand=Plus/Plus Query 58 GTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCGCGCTCGTT 117 |||||||||||||||||||| |||||||||||||||||||||||| | || |||||||| Sbjct 664 GTTGCCCTCGGCGTTGTTCAAGCCGAACAGGCGCTCCTTGATGATGCTGTCACGCTCGTT 723 Query 118 CCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCCAGGCCGTC 177 |||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||||| Sbjct 724 CCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAGCCGGCCAGGCCGTC 783 Query 178 CTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGCCCAGGCGTC 237 ||||||||||||||||||||||||||| || || || |||||||| ||||||||||| || Sbjct 784 CTCGCCCCAACGGTAGGCGCGGCTGCGGGCGTGTTCGTGGGGGAAATAGGCCCAGGCATC 843 Query 238 GCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAGGTAGGGGCC 297 ||| ||||||||||||||||||||||||||||||||||||||||| || | || ||||| Sbjct 844 GCCGTCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCACTTAAATACGGGCC 903 Query 298 CCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCGTTGGCCTTC 345 |||||||||||| ||||||||||| || |||||||| |||||||| Sbjct 904 CCACTCGCGCCAACGCTCGGCGTCTTGGGCGGCCAGGCGCTGGCCTTC 951 >seq2930929 Length=393 Score = 383 bits (424), Expect = 3e-104 Identities = 263/297 (89%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108 ||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||| | || Sbjct 339 TTCTCCGTGATTGCCCTCGGCGTTGTTGAGGCCGAACAGGCGCTCCTTGAGGATGCTGTC 280 Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168 |||||||||||||| |||| ||||||||||| |||||||||||||| ||||| ||||| Sbjct 279 ACGCTCGTTCCACAGCGCCAAACCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCCGC 220 Query 169 CAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGC 228 |||||||||||||||||||||||||||||||||||| || || || |||||||||||||| Sbjct 219 CAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGGGCGTGTTCGTGGGGGAAGTAGGC 160 Query 229 CCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAG 288 |||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || | Sbjct 159 CCAGGCATCGCCGTCGGCGCTGTAGTCTTCGCGCACTGTGCCCCATTGGCGTTCACTTAA 100 Query 289 GTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCGTTGGCCTTC 345 || ||||||||||||||||| |||||||||| || |||||||| |||||||| Sbjct 99 ATACGGGCCCCACTCGCGCCAATGCTCGGCGTCTTCGGCGGCCAGGCGCTGGCCTTC 43 >seq3087644 Length=5590 Score = 307 bits (340), Expect = 2e-81 Identities = 208/233 (89%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 115 GTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCCAGGCC 174 ||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct 1 GTTCCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCGGCCAGGCC 60 Query 175 GTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGCCCAGGC 234 ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| Sbjct 61 ATCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGTTCATGGGGGAAATAGGCCCAGGC 120 Query 235 GTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAGGTAGGG 294 ||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||| || Sbjct 121 GTCGCCATCGGCGCTGTAGTCCTCGCGCACAGTGCCCCATTGGCGTTCACTCAAGTAAGG 180 Query 295 GCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCGTTGGCCTTCGA 347 ||||||| |||||||| ||||| || || ||||| || |||||||||| Sbjct 181 CCCCCACTGGCGCCAGCATTCGGCATCCTCCGTCGCCAGCCGCTGGCCTTCGA 233 >seq2773963 Length=222 Score = 288 bits (318), Expect = 2e-75 Identities = 197/222 (89%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 115 GTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCCAGGCC 174 ||||||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||| Sbjct 222 GTTCCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCGGCCAGGCC 163 Query 175 GTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGCCCAGGC 234 || |||||||| || |||||||||||||| || |||||||| ||||||||||||||||| Sbjct 162 ATCTTCGCCCCAGCGATAGGCGCGGCTGCGCGCGTGGTCATGCGGGAAGTAGGCCCAGGC 103 Query 235 GTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAGGTAGGG 294 ||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| || Sbjct 102 ATCGCCGTCTGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCACTCAAGTACGG 43 Query 295 GCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCG 336 ||||||||||||||| |||||||| || || |||||||| Sbjct 42 GCCCCACTCGCGCCAACGCTCGGCCTCTGGCGTCGCCAGGCG 1 >seq2875751 Length=297 Score = 161 bits (178), Expect = 2e-37 Identities = 107/119 (90%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109 ||||||||||||||||||||||||| |||||||||||||| ||||||| ||| | ||| Sbjct 119 TCACCGTGGTTGCCCTCGGCGTTGTCGAGGCCGAACAGGCGTTCCTTGAGGATCGCGTCG 60 Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168 |||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || || Sbjct 59 CGCTCGTTCCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCGGC 1 >seq3022932 Length=828 Score = 154 bits (170), Expect = 3e-35 Identities = 106/120 (88%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108 |||||||||||||||||||||||| |||| |||||||| |||||||||| ||| || Sbjct 120 TTCACCGTGGTTGCCCTCGGCGTTATTCAAGCCGAACAACCGCTCCTTGAGGATCGTGTC 61 Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168 ||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || || Sbjct 60 GCGCTCGTTCCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCGGC 1 >seq2488684 Length=165 Score = 80.6 bits (88), Expect = 5e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 274 TTGGCGTTCGCTCAGGTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAG 333 ||||||||| |||| ||| ||||||||||||||||| |||||||| || || ||||| Sbjct 165 TTGGCGTTCACTCAAGTACGGGCCCCACTCGCGCCAACGCTCGGCCTCTGGCGTCGCCAG 106 Query 334 GCGTTGGCCTTC 345 ||| |||||||| Sbjct 105 GCGCTGGCCTTC 94 >seq2488683 Length=165 Score = 80.6 bits (88), Expect = 5e-13 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 274 TTGGCGTTCGCTCAGGTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAG 333 ||||||||| |||| ||| ||||||||||||||||| |||||||| || || ||||| Sbjct 165 TTGGCGTTCACTCAAGTACGGGCCCCACTCGCGCCAACGCTCGGCCTCTGGCGTCGCCAG 106 Query 334 GCGTTGGCCTTC 345 ||||||||| || Sbjct 105 GCGTTGGCCCTC 94 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 976867809120