Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002120.1
Length=347
Score E
Sequences producing significant alignments: (Bits) Value
seq209779 389 8e-106
seq2930929 383 3e-104
seq3087644 307 2e-81
seq2773963 288 2e-75
seq2875751 161 2e-37
seq3022932 154 3e-35
seq2488684 80.6 5e-13
seq2488683 80.6 5e-13
>seq209779
Length=2078
Score = 389 bits (430), Expect = 8e-106
Identities = 259/288 (90%), Gaps = 0/288 (0%)
Strand=Plus/Plus
Query 58 GTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCGCGCTCGTT 117
|||||||||||||||||||| |||||||||||||||||||||||| | || ||||||||
Sbjct 664 GTTGCCCTCGGCGTTGTTCAAGCCGAACAGGCGCTCCTTGATGATGCTGTCACGCTCGTT 723
Query 118 CCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCCAGGCCGTC 177
|||||| ||||||||||||||||| |||||||||||||| ||||| || |||||||||||
Sbjct 724 CCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAGCCGGCCAGGCCGTC 783
Query 178 CTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGCCCAGGCGTC 237
||||||||||||||||||||||||||| || || || |||||||| ||||||||||| ||
Sbjct 784 CTCGCCCCAACGGTAGGCGCGGCTGCGGGCGTGTTCGTGGGGGAAATAGGCCCAGGCATC 843
Query 238 GCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAGGTAGGGGCC 297
||| ||||||||||||||||||||||||||||||||||||||||| || | || |||||
Sbjct 844 GCCGTCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCACTTAAATACGGGCC 903
Query 298 CCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCGTTGGCCTTC 345
|||||||||||| ||||||||||| || |||||||| ||||||||
Sbjct 904 CCACTCGCGCCAACGCTCGGCGTCTTGGGCGGCCAGGCGCTGGCCTTC 951
>seq2930929
Length=393
Score = 383 bits (424), Expect = 3e-104
Identities = 263/297 (89%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108
||| ||||| ||||||||||||||||| |||||||||||||||||||||| ||| | ||
Sbjct 339 TTCTCCGTGATTGCCCTCGGCGTTGTTGAGGCCGAACAGGCGCTCCTTGAGGATGCTGTC 280
Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168
|||||||||||||| |||| ||||||||||| |||||||||||||| ||||| |||||
Sbjct 279 ACGCTCGTTCCACAGCGCCAAACCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCCGC 220
Query 169 CAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGC 228
|||||||||||||||||||||||||||||||||||| || || || ||||||||||||||
Sbjct 219 CAGGCCGTCCTCGCCCCAACGGTAGGCGCGGCTGCGGGCGTGTTCGTGGGGGAAGTAGGC 160
Query 229 CCAGGCGTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAG 288
|||||| ||||| ||||||||||||||||||||||| ||||||||||||||||| || |
Sbjct 159 CCAGGCATCGCCGTCGGCGCTGTAGTCTTCGCGCACTGTGCCCCATTGGCGTTCACTTAA 100
Query 289 GTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCGTTGGCCTTC 345
|| ||||||||||||||||| |||||||||| || |||||||| ||||||||
Sbjct 99 ATACGGGCCCCACTCGCGCCAATGCTCGGCGTCTTCGGCGGCCAGGCGCTGGCCTTC 43
>seq3087644
Length=5590
Score = 307 bits (340), Expect = 2e-81
Identities = 208/233 (89%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 115 GTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCCAGGCC 174
||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 1 GTTCCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCGGCCAGGCC 60
Query 175 GTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGCCCAGGC 234
||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct 61 ATCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGTTCATGGGGGAAATAGGCCCAGGC 120
Query 235 GTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAGGTAGGG 294
||||||||||||||||||||| |||||||| ||||||||||||||||| |||| ||| ||
Sbjct 121 GTCGCCATCGGCGCTGTAGTCCTCGCGCACAGTGCCCCATTGGCGTTCACTCAAGTAAGG 180
Query 295 GCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCGTTGGCCTTCGA 347
||||||| |||||||| ||||| || || ||||| || ||||||||||
Sbjct 181 CCCCCACTGGCGCCAGCATTCGGCATCCTCCGTCGCCAGCCGCTGGCCTTCGA 233
>seq2773963
Length=222
Score = 288 bits (318), Expect = 2e-75
Identities = 197/222 (89%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 115 GTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGCCAGGCC 174
||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||||||||
Sbjct 222 GTTCCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCGGCCAGGCC 163
Query 175 GTCCTCGCCCCAACGGTAGGCGCGGCTGCGTGCATGGTCATGGGGGAAGTAGGCCCAGGC 234
|| |||||||| || |||||||||||||| || |||||||| |||||||||||||||||
Sbjct 162 ATCTTCGCCCCAGCGATAGGCGCGGCTGCGCGCGTGGTCATGCGGGAAGTAGGCCCAGGC 103
Query 235 GTCGCCATCGGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCGCTCAGGTAGGG 294
||||| || |||||||||||||||||||||||||||||||||||||| |||| ||| ||
Sbjct 102 ATCGCCGTCTGCGCTGTAGTCTTCGCGCACCGTGCCCCATTGGCGTTCACTCAAGTACGG 43
Query 295 GCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAGGCG 336
||||||||||||||| |||||||| || || ||||||||
Sbjct 42 GCCCCACTCGCGCCAACGCTCGGCCTCTGGCGTCGCCAGGCG 1
>seq2875751
Length=297
Score = 161 bits (178), Expect = 2e-37
Identities = 107/119 (90%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 50 TCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATCG 109
||||||||||||||||||||||||| |||||||||||||| ||||||| ||| | |||
Sbjct 119 TCACCGTGGTTGCCCTCGGCGTTGTCGAGGCCGAACAGGCGTTCCTTGAGGATCGCGTCG 60
Query 110 CGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168
|||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||
Sbjct 59 CGCTCGTTCCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCGGC 1
>seq3022932
Length=828
Score = 154 bits (170), Expect = 3e-35
Identities = 106/120 (88%), Gaps = 0/120 (0%)
Strand=Plus/Minus
Query 49 TTCACCGTGGTTGCCCTCGGCGTTGTTCAGGCCGAACAGGCGCTCCTTGATGATTCCATC 108
|||||||||||||||||||||||| |||| |||||||| |||||||||| ||| ||
Sbjct 120 TTCACCGTGGTTGCCCTCGGCGTTATTCAAGCCGAACAACCGCTCCTTGAGGATCGTGTC 61
Query 109 GCGCTCGTTCCACAGGGCCAGGCCCAGGCACCAACGTTGCGCCTTGTCACTGAACCCCGC 168
||||||||||||||| ||||||||||||||||| |||||||||||||| ||||| || ||
Sbjct 60 GCGCTCGTTCCACAGCGCCAGGCCCAGGCACCAGCGTTGCGCCTTGTCGCTGAAACCGGC 1
>seq2488684
Length=165
Score = 80.6 bits (88), Expect = 5e-13
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 274 TTGGCGTTCGCTCAGGTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAG 333
||||||||| |||| ||| ||||||||||||||||| |||||||| || || |||||
Sbjct 165 TTGGCGTTCACTCAAGTACGGGCCCCACTCGCGCCAACGCTCGGCCTCTGGCGTCGCCAG 106
Query 334 GCGTTGGCCTTC 345
||| ||||||||
Sbjct 105 GCGCTGGCCTTC 94
>seq2488683
Length=165
Score = 80.6 bits (88), Expect = 5e-13
Identities = 61/72 (85%), Gaps = 0/72 (0%)
Strand=Plus/Minus
Query 274 TTGGCGTTCGCTCAGGTAGGGGCCCCACTCGCGCCAGCGCTCGGCGTCGCTGGTTGCCAG 333
||||||||| |||| ||| ||||||||||||||||| |||||||| || || |||||
Sbjct 165 TTGGCGTTCACTCAAGTACGGGCCCCACTCGCGCCAACGCTCGGCCTCTGGCGTCGCCAG 106
Query 334 GCGTTGGCCTTC 345
||||||||| ||
Sbjct 105 GCGTTGGCCCTC 94
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 976867809120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |