Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002172.1 Length=233 Score E Sequences producing significant alignments: (Bits) Value seq3083397 347 2e-93 seq2845283 343 2e-92 seq2852430 336 3e-90 seq2855875 96.9 4e-18 seq2855874 91.5 2e-16 seq2854148 77.0 4e-12 seq2853577 77.0 4e-12 >seq3083397 Length=2697 Score = 347 bits (384), Expect = 2e-93 Identities = 219/234 (94%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 1 TCGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTT-CCG 59 |||||||||||||||||||||||| |||||||||||||||||||||||| |||||| ||| Sbjct 1801 TCGAGTGGTCAAGCCGACCTTCGTCCGCCATGGCAAAACCTTGATCTAA-CTATTTTCCG 1743 Query 60 GCAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGACTATGAGCGATATCCCTGC 119 |||||||| |||||||||||||| ||||||||||||||||||||||||| |||||||||| Sbjct 1742 GCAGGCCACTGGCCGCTGACATTTCTTCTTGAGGACACAGACTATGAGCAATATCCCTGC 1683 Query 120 CGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGAC 179 |||||||||||||||||||||||| || ||||||||||||||||| |||||||||||||| Sbjct 1682 CGACCTGCGTTTTGCCGAAAGTCATGAGTGGGCCCGTCTGGAAGCCGACGGCACCGTGAC 1623 Query 180 CGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTCGA 233 ||| || |||||||||||||| |||||||||||||| ||||||||| |||| || Sbjct 1622 CGTCGGAATCTCCGACCATGCACAGGAAGCGTTGGGTGATGTGGTGTTTGTTGA 1569 >seq2845283 Length=265 Score = 343 bits (380), Expect = 2e-92 Identities = 212/225 (94%), Gaps = 1/225 (0%) Strand=Plus/Plus Query 1 TCGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTTCCGG 60 |||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||| Sbjct 40 TCGAGTGGTCAAACCGACCTTCGTGCGCCATGGCAAAACCTTGATTTAA-CTATTTCCGG 98 Query 61 CAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGACTATGAGCGATATCCCTGCC 120 |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 99 CAGGCCTGAGGCCGCTGACATTTCTTCTTGAGGACACAGACTATGAGCGATATCCCTGCC 158 Query 121 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGACC 180 |||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||| Sbjct 159 GACCTGCGTTTTGCCGAAAGTCACGAGTGGGCCCGTCTGGAAGCCGACGGCACCGTGACC 218 Query 181 GTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTG 225 || ||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 219 GTCGGTATCTCCGACCATGCTCAGGAAGCTTTGGGTGATGTGGTG 263 >seq2852430 Length=272 Score = 336 bits (372), Expect = 3e-90 Identities = 215/233 (92%), Gaps = 1/233 (0%) Strand=Plus/Minus Query 1 TCGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTTCCGG 60 |||||||||||| ||||||||||| |||||||||||||||||||||||| |||||||||| Sbjct 233 TCGAGTGGTCAAACCGACCTTCGTACGCCATGGCAAAACCTTGATCTAA-CTATTTCCGG 175 Query 61 CAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGACTATGAGCGATATCCCTGCC 120 |||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||| || Sbjct 174 CAGGCCGAAGGCCGCTGACATTTCTTCTTGAGGACACAGATTATGAGCGATATCCCAGCT 115 Query 121 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGACC 180 |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 114 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCCGACGGCACTGTGACC 55 Query 181 GTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTCGA 233 || || || ||||||||||| |||||||||||||| ||||||||| |||| || Sbjct 54 GTCGGGATTTCCGACCATGCACAGGAAGCGTTGGGTGATGTGGTGTTTGTTGA 2 >seq2855875 Length=275 Score = 96.9 bits (106), Expect = 4e-18 Identities = 62/68 (91%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 166 GACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTG 225 ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 274 GACGGCACCGTGACCGTCGGTATCTCCGACCATGCTCAGGAAGCTTTGGGTGATGTGGTG 215 Query 226 ATTGTCGA 233 |||| || Sbjct 214 TTTGTTGA 207 >seq2855874 Length=275 Score = 91.5 bits (100), Expect = 2e-16 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 166 GACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTG 225 ||||||||||||||||| ||||||||||||||||| |||||||| ||||| ||||||||| Sbjct 274 GACGGCACCGTGACCGTCGGTATCTCCGACCATGCTCAGGAAGCTTTGGGTGATGTGGTG 215 Query 226 ATTGTCGA 233 | || || Sbjct 214 TTCGTTGA 207 >seq2854148 Length=273 Score = 77.0 bits (84), Expect = 4e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 172 ACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTC 231 || |||||||| || || ||||||||||| |||||||||||||| ||||||||| |||| Sbjct 1 ACTGTGACCGTCGGGATTTCCGACCATGCACAGGAAGCGTTGGGTGATGTGGTGTTTGTT 60 Query 232 GA 233 || Sbjct 61 GA 62 >seq2853577 Length=273 Score = 77.0 bits (84), Expect = 4e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 172 ACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTC 231 || |||||||| || || ||||||||||| |||||||||||||| ||||||||| |||| Sbjct 273 ACTGTGACCGTCGGGATTTCCGACCATGCACAGGAAGCGTTGGGTGATGTGGTGTTTGTT 214 Query 232 GA 233 || Sbjct 213 GA 212 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627059744118