Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002172.1
Length=233
Score E
Sequences producing significant alignments: (Bits) Value
seq3083397 347 2e-93
seq2845283 343 2e-92
seq2852430 336 3e-90
seq2855875 96.9 4e-18
seq2855874 91.5 2e-16
seq2854148 77.0 4e-12
seq2853577 77.0 4e-12
>seq3083397
Length=2697
Score = 347 bits (384), Expect = 2e-93
Identities = 219/234 (94%), Gaps = 2/234 (1%)
Strand=Plus/Minus
Query 1 TCGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTT-CCG 59
|||||||||||||||||||||||| |||||||||||||||||||||||| |||||| |||
Sbjct 1801 TCGAGTGGTCAAGCCGACCTTCGTCCGCCATGGCAAAACCTTGATCTAA-CTATTTTCCG 1743
Query 60 GCAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGACTATGAGCGATATCCCTGC 119
|||||||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 1742 GCAGGCCACTGGCCGCTGACATTTCTTCTTGAGGACACAGACTATGAGCAATATCCCTGC 1683
Query 120 CGACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGAC 179
|||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||
Sbjct 1682 CGACCTGCGTTTTGCCGAAAGTCATGAGTGGGCCCGTCTGGAAGCCGACGGCACCGTGAC 1623
Query 180 CGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTCGA 233
||| || |||||||||||||| |||||||||||||| ||||||||| |||| ||
Sbjct 1622 CGTCGGAATCTCCGACCATGCACAGGAAGCGTTGGGTGATGTGGTGTTTGTTGA 1569
>seq2845283
Length=265
Score = 343 bits (380), Expect = 2e-92
Identities = 212/225 (94%), Gaps = 1/225 (0%)
Strand=Plus/Plus
Query 1 TCGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTTCCGG 60
|||||||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||
Sbjct 40 TCGAGTGGTCAAACCGACCTTCGTGCGCCATGGCAAAACCTTGATTTAA-CTATTTCCGG 98
Query 61 CAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGACTATGAGCGATATCCCTGCC 120
|||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 99 CAGGCCTGAGGCCGCTGACATTTCTTCTTGAGGACACAGACTATGAGCGATATCCCTGCC 158
Query 121 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGACC 180
|||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||
Sbjct 159 GACCTGCGTTTTGCCGAAAGTCACGAGTGGGCCCGTCTGGAAGCCGACGGCACCGTGACC 218
Query 181 GTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTG 225
|| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 219 GTCGGTATCTCCGACCATGCTCAGGAAGCTTTGGGTGATGTGGTG 263
>seq2852430
Length=272
Score = 336 bits (372), Expect = 3e-90
Identities = 215/233 (92%), Gaps = 1/233 (0%)
Strand=Plus/Minus
Query 1 TCGAGTGGTCAAGCCGACCTTCGTGCGCCATGGCAAAACCTTGATCTAATCTATTTCCGG 60
|||||||||||| ||||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 233 TCGAGTGGTCAAACCGACCTTCGTACGCCATGGCAAAACCTTGATCTAA-CTATTTCCGG 175
Query 61 CAGGCCAATGGCCGCTGACATTACTTCTTGAGGACACAGACTATGAGCGATATCCCTGCC 120
|||||| | ||||||||||||| ||||||||||||||||| ||||||||||||||| ||
Sbjct 174 CAGGCCGAAGGCCGCTGACATTTCTTCTTGAGGACACAGATTATGAGCGATATCCCAGCT 115
Query 121 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCTGACGGCACCGTGACC 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||
Sbjct 114 GACCTGCGTTTTGCCGAAAGTCACGAATGGGCCCGTCTGGAAGCCGACGGCACTGTGACC 55
Query 181 GTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTCGA 233
|| || || ||||||||||| |||||||||||||| ||||||||| |||| ||
Sbjct 54 GTCGGGATTTCCGACCATGCACAGGAAGCGTTGGGTGATGTGGTGTTTGTTGA 2
>seq2855875
Length=275
Score = 96.9 bits (106), Expect = 4e-18
Identities = 62/68 (91%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 166 GACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTG 225
||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 274 GACGGCACCGTGACCGTCGGTATCTCCGACCATGCTCAGGAAGCTTTGGGTGATGTGGTG 215
Query 226 ATTGTCGA 233
|||| ||
Sbjct 214 TTTGTTGA 207
>seq2855874
Length=275
Score = 91.5 bits (100), Expect = 2e-16
Identities = 61/68 (90%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 166 GACGGCACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTG 225
||||||||||||||||| ||||||||||||||||| |||||||| ||||| |||||||||
Sbjct 274 GACGGCACCGTGACCGTCGGTATCTCCGACCATGCTCAGGAAGCTTTGGGTGATGTGGTG 215
Query 226 ATTGTCGA 233
| || ||
Sbjct 214 TTCGTTGA 207
>seq2854148
Length=273
Score = 77.0 bits (84), Expect = 4e-12
Identities = 54/62 (87%), Gaps = 0/62 (0%)
Strand=Plus/Plus
Query 172 ACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTC 231
|| |||||||| || || ||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 1 ACTGTGACCGTCGGGATTTCCGACCATGCACAGGAAGCGTTGGGTGATGTGGTGTTTGTT 60
Query 232 GA 233
||
Sbjct 61 GA 62
>seq2853577
Length=273
Score = 77.0 bits (84), Expect = 4e-12
Identities = 54/62 (87%), Gaps = 0/62 (0%)
Strand=Plus/Minus
Query 172 ACCGTGACCGTGGGTATCTCCGACCATGCCCAGGAAGCGTTGGGGGATGTGGTGATTGTC 231
|| |||||||| || || ||||||||||| |||||||||||||| ||||||||| ||||
Sbjct 273 ACTGTGACCGTCGGGATTTCCGACCATGCACAGGAAGCGTTGGGTGATGTGGTGTTTGTT 214
Query 232 GA 233
||
Sbjct 213 GA 212
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 627059744118
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |