Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq74132 150 3e-34 seq35691 131 3e-28 seq28914 93.3 8e-17 >seq74132 Length=39836 Score = 150 bits (166), Expect = 3e-34 Identities = 168/223 (75%), Gaps = 1/223 (0%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||| ||||||||||| | | || |||| |||||||| Sbjct 30616 AGATTGAG-CAATAACAGGTCTGTGATTCCCTTAGATGTCCGGAGCTGCACACGCGCTAC 30674 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225 |||||| | || | || | | ||| ||||| |||| ||||||| | | || | Sbjct 30675 ACTGACTGGCTCATTGTGTGCTTACCCTATGCCGGCAGGTGTGGGTAACCCATTGAACCC 30734 Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285 | ||||| | || || | | |||||||||||| | | | || ||||||| || |||||| Sbjct 30735 CATTCGTGATAGGAATTGGGGATTGCAATTATTCCCCATGAATGAGGAATTCCCAGTAAG 30794 Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || ||| | ||| ||||||||| ||||||| |||||||| Sbjct 30795 TGCAGGTCGTAAGCTTACGTTGATTAAGTCCCTGACCTTTGTA 30837 >seq35691 Length=19888 Score = 131 bits (144), Expect = 3e-28 Identities = 168/225 (75%), Gaps = 5/225 (2%) Strand=Plus/Plus Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165 || ||||| |||||||||||||||||||||||||||||| | |||| | | || ||||| Sbjct 5254 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGTATGCATGCTAC 5312 Query 166 ACTGACAGAGCCAACGAGTTCATCACCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224 |||||| || ||| | || | | ||||| ||| | ||| ||||| || | |||| Sbjct 5313 ACTGACTGACTCAATGTGTGCCT-ACCTTATGCCTGCAGGCACAGGTAACCTGTTGAAAC 5371 Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTC-AACGAGGAATGCCTAGTA 283 | | || ||||||| | |||||||||||| ||| | || ||||||| || | || Sbjct 5372 GCATTTGTAATGGGGATCAGGGATTGCAATTATT-CTCCACGAATGAGGAATTCCCACTA 5430 Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 || || | ||| ||| | |||||||| ||||||||||||| || Sbjct 5431 AGTACGGGCCATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTCTA 5475 >seq28914 Length=37945 Score = 93.3 bits (102), Expect = 8e-17 Identities = 129/173 (75%), Gaps = 6/173 (3%) Strand=Plus/Minus Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130 |||||||||||||| | ||| | |||| | ||| |||| |||||||||||||||| Sbjct 2998 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGACTGAG-CAATAACAGGTCTGTG 2941 Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC-AGAGCCAACGAGTTCATC 189 |||||||||||||| | |||| |||| | ||||||||||| | || || || | | Sbjct 2940 ATGCCCTTAGATGTCCGGGGCTGCACATGTGCTACACTGACTGGGGCTCACATGTGCCTA 2881 Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGAT 241 ||| ||| | ||| ||||||| || ||| ||| || | ||| ||||||| Sbjct 2880 TCCTATGCCAGCAGGCATGGGTAA-CTAGTTGAACCCTCTTTGTGATGGGGAT 2829 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 917945623808