Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq74132 150 3e-34
seq35691 131 3e-28
seq28914 93.3 8e-17
>seq74132
Length=39836
Score = 150 bits (166), Expect = 3e-34
Identities = 168/223 (75%), Gaps = 1/223 (0%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||| ||||||||||| | | || |||| ||||||||
Sbjct 30616 AGATTGAG-CAATAACAGGTCTGTGATTCCCTTAGATGTCCGGAGCTGCACACGCGCTAC 30674
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACT 225
|||||| | || | || | | ||| ||||| |||| ||||||| | | || |
Sbjct 30675 ACTGACTGGCTCATTGTGTGCTTACCCTATGCCGGCAGGTGTGGGTAACCCATTGAACCC 30734
Query 226 CTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAG 285
| ||||| | || || | | |||||||||||| | | | || ||||||| || ||||||
Sbjct 30735 CATTCGTGATAGGAATTGGGGATTGCAATTATTCCCCATGAATGAGGAATTCCCAGTAAG 30794
Query 286 CGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| ||| | ||| ||||||||| ||||||| ||||||||
Sbjct 30795 TGCAGGTCGTAAGCTTACGTTGATTAAGTCCCTGACCTTTGTA 30837
>seq35691
Length=19888
Score = 131 bits (144), Expect = 3e-28
Identities = 168/225 (75%), Gaps = 5/225 (2%)
Strand=Plus/Plus
Query 106 AGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTAC 165
|| ||||| |||||||||||||||||||||||||||||| | |||| | | || |||||
Sbjct 5254 AGATTGAG-CAATAACAGGTCTGTGATGCCCTTAGATGTCCAGGGCTGTATGCATGCTAC 5312
Query 166 ACTGACAGAGCCAACGAGTTCATCACCTT-GGCCGGAAGGTCTGGGTAATCTTGTTAAAC 224
|||||| || ||| | || | | ||||| ||| | ||| ||||| || | ||||
Sbjct 5313 ACTGACTGACTCAATGTGTGCCT-ACCTTATGCCTGCAGGCACAGGTAACCTGTTGAAAC 5371
Query 225 TCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTC-AACGAGGAATGCCTAGTA 283
| | || ||||||| | |||||||||||| ||| | || ||||||| || | ||
Sbjct 5372 GCATTTGTAATGGGGATCAGGGATTGCAATTATT-CTCCACGAATGAGGAATTCCCACTA 5430
Query 284 AGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
|| || | ||| ||| | |||||||| ||||||||||||| ||
Sbjct 5431 AGTACGGGCCATAAGCTTGTGTTGATTAAGTCCCTGCCCTTTCTA 5475
>seq28914
Length=37945
Score = 93.3 bits (102), Expect = 8e-17
Identities = 129/173 (75%), Gaps = 6/173 (3%)
Strand=Plus/Minus
Query 72 CTTCTTAGAGGGACTATCGGC-TCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTG 130
|||||||||||||| | ||| | |||| | ||| |||| ||||||||||||||||
Sbjct 2998 CTTCTTAGAGGGACAAGTGGCATTCAGCC-ACCCAAGACTGAG-CAATAACAGGTCTGTG 2941
Query 131 ATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGAC-AGAGCCAACGAGTTCATC 189
|||||||||||||| | |||| |||| | ||||||||||| | || || || | |
Sbjct 2940 ATGCCCTTAGATGTCCGGGGCTGCACATGTGCTACACTGACTGGGGCTCACATGTGCCTA 2881
Query 190 ACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCT-GTCGTGCTGGGGAT 241
||| ||| | ||| ||||||| || ||| ||| || | ||| |||||||
Sbjct 2880 TCCTATGCCAGCAGGCATGGGTAA-CTAGTTGAACCCTCTTTGTGATGGGGAT 2829
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 917945623808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |