Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq222150 152 9e-35 seq10722 149 1e-33 seq210950 136 7e-30 seq2081632 122 2e-25 seq2081631 122 2e-25 seq2052818 122 2e-25 seq1814696 122 2e-25 seq2415640 120 5e-25 seq1970050 114 2e-23 seq1970049 114 2e-23 seq2206868 105 1e-20 seq2252401 100 5e-19 seq2087455 98.7 2e-18 seq1787275 87.8 3e-15 seq769035 86.0 1e-14 seq1971986 75.2 2e-11 seq1772359 73.4 7e-11 >seq222150 Length=2306 Score = 152 bits (168), Expect = 9e-35 Identities = 192/259 (74%), Gaps = 11/259 (4%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGAT 59 || || || ||||||||||||||| | | || |||||||||||| | || || |||| Sbjct 2302 AGGGCGCACGGTGGATGCCTTGGCACTAAGAGCCGATGAAGGACGGGACTAACTC-CGAT 2244 Query 60 AAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 | ||| |||||| | || | ||||||||| |||||||||||||||| ||||| | Sbjct 2243 ATGCTTTGGGGAGCT-GTAAGTAAGCTTTGATCCAAAGATTTCCGAATGGGGGAACCCAG 2185 Query 120 CCCTTTGG-------GTCATTGCATGCTGAATACATAGGTATGCAAAGCGA-ACGCGGCG 171 | ||| || | ||| |||||||||||||| | | || | |||| | | Sbjct 2184 CATTTTTTATAGAATGTTACTGCTAGCTGAATACATAGGCTAGTAGAGGTAGACGCAGAG 2125 Query 172 AACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGC 231 |||||||||||||||||| ||||||||| ||||| || ||||||| ||||| ||| Sbjct 2124 AACTGAAACATCTAAGTACCTGCAGGAAGAGAAAGAAAATTCGATTCCCTGAGTAGCGGC 2065 Query 232 GAGCGAAATGGGATGAGCC 250 |||||||| |||| ||||| Sbjct 2064 GAGCGAAACGGGAAGAGCC 2046 >seq10722 Length=3686 Score = 149 bits (164), Expect = 1e-33 Identities = 231/324 (71%), Gaps = 12/324 (4%) Strand=Plus/Minus Query 6 ACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTG 65 ||| |||||||||| |||| | | |||||||||||||||| || |||||||||| Sbjct 3147 ACACGGTGGATGCCCTGGCAGTCAGAGGCGATGAAGGACGTGCTAATCTGCGATAAGCGT 3088 Query 66 CGGGGAG-TGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTT 124 ||| || ||| | || || | ||| ||||||||||||||||||||| | Sbjct 3087 CGGTAAGGTGATATGA-ACCGTTATAGCCGGCGATTTCCGAATGGGGAAACCCAGTGTGA 3029 Query 125 TGGGTCATTGCATGCT-----GAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAA 179 | |||| || | |||||||||| | | |||||||| || ||||||||| Sbjct 3028 TTCGTCACACTATCGTTAAGTGAATACATAGCTTAACGAAGCGAACCGGGGGAACTGAAA 2969 Query 180 CATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCGAAA 239 |||||||||| | |||||||||||||||||||||||||| ||||| |||||||||| Sbjct 2968 CATCTAAGTACCCCGAGGAAAAGAAATCAACCGAGATTCCCCCAGTAGCGGCGAGCGAAC 2909 Query 240 TGGGATGAGCCTTTA---CGAGATAGTTGAATTGATAGTGGAATCCTCTGGAAA-TAGGA 295 |||| |||| | || |||| || |||||||| | |||||||| | | | Sbjct 2908 GGGGAGCAGCCCAGAACCTGAATCAGTTTGTGTGTTAGTGGAAGCGTCTGGAAAGTCGCA 2849 Query 296 GCCATAGCGGGTGATAGCCCCGTA 319 | || |||||||| |||||| Sbjct 2848 G-GGTACAGGGTGATACTCCCGTA 2826 >seq210950 Length=3273 Score = 136 bits (150), Expect = 7e-30 Identities = 187/257 (73%), Gaps = 17/257 (7%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGT-AGTAGCTTGCGAT 59 || || || ||||||||||||| | | || |||||||||||| | || | |||| Sbjct 2047 AGGGCGCACGGTGGATGCCTTGACACTAGGAGTCGATGAAGGACGGGACTAACGC-CGAT 2105 Query 60 AAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGG 119 | ||| ||||||| | || | |||||||||| |||||||||||||||||||||| Sbjct 2106 ATGCTTCGGGGAGCT-GTAAGTAAGCTTTGATCCGAAGATTTCCGAATGGGGAAACCCA- 2163 Query 120 CCCTTTGGGTCATTGCATG----------CTGAATACATAGG-TATGCAAAGCGAACGCG 168 || | || || | ||| ||||||||||||| |||| || | || | Sbjct 2164 --CTATACGTAATGGTATGGTATCCTTACCTGAATACATAGGGTATGGAAGACAGACCCA 2221 Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 | ||||||||||||||||||| ||| ||||| ||||| ||| | |||| || ||||| Sbjct 2222 GGGAACTGAAACATCTAAGTACCTGGAGGAAGAGAAAGCAAATGCGATTTCCTGAGTAGC 2281 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||||| || || Sbjct 2282 GGCGAGCGAAACGGAAT 2298 >seq2081632 Length=127 Score = 122 bits (134), Expect = 2e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| | | |||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 1 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGG 60 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC 121 ||| ||||||| ||||||||||| |||| || |||||||| ||||| ||| Sbjct 61 GAGACGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGCC 112 >seq2081631 Length=127 Score = 122 bits (134), Expect = 2e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| | | |||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 1 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGG 60 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC 121 ||| ||||||| ||||||||||| |||| || |||||||| ||||| ||| Sbjct 61 GAGGCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGCC 112 >seq2052818 Length=127 Score = 122 bits (134), Expect = 2e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Plus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| | | |||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 3 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGG 62 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC 121 | || ||||||| ||||||||||| |||| || |||||||| ||||| ||| Sbjct 63 GGGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGCC 114 >seq1814696 Length=127 Score = 122 bits (134), Expect = 2e-25 Identities = 94/112 (84%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 10 GGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGG 69 ||||||||||||||| | | |||||||||| ||||| ||||| ||||| ||||| |||| Sbjct 127 GGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGG 68 Query 70 GAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCC 121 ||| ||||||| ||||||||||| |||| || |||||||| ||||| ||| Sbjct 67 GAGCCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGCC 16 >seq2415640 Length=153 Score = 120 bits (132), Expect = 5e-25 Identities = 119/152 (78%), Gaps = 9/152 (6%) Strand=Plus/Minus Query 76 GCAAACACACTTTGATCCGCAGATTTCCGAATGGGGAAACCCGGCCCTT------TGGGT 129 ||||||| ||||||||||| |||| || |||||||| ||||| ||| | ||| | Sbjct 151 GCAAACAGACTTTGATCCGGAGATGTCTGAATGGGGGAACCCAGCCATCATAAGATGGTT 92 Query 130 -CATTGCATGCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGT 188 | || || |||||||||||||| | |||||| || |||||||||||||||||| Sbjct 91 ACCTTACA--CTGAATACATAGGTGTAAGGGGCGAACCAGGGGAACTGAAACATCTAAGT 34 Query 189 AGCTGCAGGAAAAGAAATCAACCGAGATTCCC 220 | | |||||||||||||||||||||||||| Sbjct 33 ACCCTGAGGAAAAGAAATCAACCGAGATTCCC 2 >seq1970050 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | | |||||||||| ||||| | ||| ||||| | Sbjct 16 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGGAGCCTGCGAAA 75 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGG 111 |||| |||||||| ||||||| ||||||||||| |||| || |||||||| Sbjct 76 AGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGG 126 >seq1970049 Length=127 Score = 114 bits (126), Expect = 2e-23 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | ||||||||||||||| | | |||||||||| ||||| | ||| ||||| | Sbjct 16 AGCGCATACGGTGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGAAGCCTGCGAAA 75 Query 61 AGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGGG 111 |||| |||||||| ||||||| ||||||||||| |||| || |||||||| Sbjct 76 AGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGGG 126 >seq2206868 Length=128 Score = 105 bits (116), Expect = 1e-20 Identities = 104/134 (78%), Gaps = 9/134 (7%) Strand=Plus/Minus Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| Sbjct 128 GAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAGC 69 Query 236 GAAATGGGATGAGCCTTTACGAGATAGTTGAATTGA---TAGTGGAATCCTCTGGAAATA 292 |||| |||| |||| ||| ||| | |||| ||| |||| ||||||||| Sbjct 68 GAAAGGGGACTAGCCCTTA------AGTGGCTTTGAGATTAGCGGAACGCTCTGGAAAGT 15 Query 293 GGAGCCATAGCGGG 306 | ||||||| ||| Sbjct 14 GCGGCCATAGTGGG 1 >seq2252401 Length=132 Score = 100 bits (110), Expect = 5e-19 Identities = 105/138 (76%), Gaps = 9/138 (7%) Strand=Plus/Minus Query 176 GAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGC 235 |||||||||||||| | |||||||||||||||||||||||||| ||||||||||||| Sbjct 132 GAAACATCTAAGTACCCTGAGGAAAAGAAATCAACCGAGATTCCCTTAGTAGTGGCGAGC 73 Query 236 GAAATGGGATGAGCCTTTACGAGATAGTTGAATTGA---TAGTGGAATCCTCTGGAAATA 292 ||| ||| |||| ||| ||| | |||| ||| |||| ||||||||| Sbjct 72 GAACGGGGGCTAGCCCTTA------AGTGGCTTTGAGATTAGCGGAACGCTCTGGAAAGT 19 Query 293 GGAGCCATAGCGGGTGAT 310 | ||||||| ||| ||| Sbjct 18 GCGGCCATAGTGGGGGAT 1 >seq2087455 Length=127 Score = 98.7 bits (108), Expect = 2e-18 Identities = 96/124 (77%), Gaps = 5/124 (4%) Strand=Plus/Plus Query 33 GCGATGAAGGACGTAGTAGCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATC 92 |||||||| ||||| ||||| ||||| ||||| |||||||| ||||||| ||||||||| Sbjct 1 GCGATGAAAGACGTGGTAGCCTGCGAAAAGCTTCGGGGAGTCGGCAAACAGACTTTGATC 60 Query 93 CGCAGATTTCCGAATGGGGAAACCCGGCCCTTTG-----GGTCATTGCATGCTGAATACA 147 || ||| || |||||||| ||||| ||| | ||| || | |||||||||| Sbjct 61 CGGCGATGTCTGAATGGGGGAACCCAGCCATCATAAGATGGTTATCTTACGCTGAATACA 120 Query 148 TAGG 151 |||| Sbjct 121 TAGG 124 >seq1787275 Length=127 Score = 87.8 bits (96), Expect = 3e-15 Identities = 98/129 (76%), Gaps = 9/129 (7%) Strand=Plus/Plus Query 96 AGATTTCCGAATGGGGAAACCCGGCCCTTTG-----GGTCATTGCATGCTGAATACATAG 150 |||| || |||||||| ||||| ||| | ||| || | ||||||||||||| Sbjct 1 AGATGTCTGAATGGGGGAACCCAGCCATCATAAGATGGTTATCTTACGCTGAATACATAG 60 Query 151 GTATGCA--AAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCA 208 | ||| | |||||| || ||||||||||||||||||| | |||||||||||||| Sbjct 61 G--CGCAAGAGGCGAACCAGGGGAACTGAAACATCTAAGTACCCTGAGGAAAAGAAATCA 118 Query 209 ACCGAGATT 217 ||||||||| Sbjct 119 ACCGAGATT 127 >seq769035 Length=108 Score = 86.0 bits (94), Expect = 1e-14 Identities = 67/80 (84%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 138 GCTGAATACATAGGTATGCAAAGCGAACGCGGCGAACTGAAACATCTAAGTAGCTGCAGG 197 |||||||||||||| | | |||||| || ||||||||||||||||||| | ||| Sbjct 80 GCTGAATACATAGGCGTAAGAGGCGAACCAGGGGAACTGAAACATCTAAGTACCCTGAGG 21 Query 198 AAAAGAAATCAACCGAGATT 217 |||||||||||||||||||| Sbjct 20 AAAAGAAATCAACCGAGATT 1 >seq1971986 Length=127 Score = 75.2 bits (82), Expect = 2e-11 Identities = 80/106 (75%), Gaps = 5/106 (5%) Strand=Plus/Plus Query 51 GCTTGCGATAAGCTGCGGGGAGTGAGCAAACACACTTTGATCCGCAGATTTCCGAATGGG 110 || ||||| ||||| |||||||| ||||||| ||||||||||| |||| || ||||||| Sbjct 1 GCCTGCGAAAAGCTTCGGGGAGTCGGCAAACAGACTTTGATCCGGAGATGTCTGAATGGG 60 Query 111 GAAACCCGGCCCTTTG-----GGTCATTGCATGCTGAATACATAGG 151 | | ||| ||| | ||| || | |||||||||||||| Sbjct 61 GGACCCCAGCCATCATAAGATGGTTATCTTACGCTGAATACATAGG 106 >seq1772359 Length=127 Score = 73.4 bits (80), Expect = 7e-11 Identities = 60/73 (82%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 1 AGTGCACATGGTGGATGCCTTGGCGATTACAGGCGATGAAGGACGTAGTAGCTTGCGATA 60 || ||| | || |||||||||||| | | |||||||||| ||||| ||||| ||||| | Sbjct 75 AGCGCATACGGGGGATGCCTTGGCAGTCAGAGGCGATGAAAGACGTGGTAGCCTGCGAAA 16 Query 61 AGCTGCGGGGAGT 73 |||| |||||||| Sbjct 15 AGCTTCGGGGAGT 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 890035114976