Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002196.1
Length=286
Score E
Sequences producing significant alignments: (Bits) Value
seq3088272 199 6e-49
seq274308 145 1e-32
seq2858992 143 4e-32
seq2786732 143 4e-32
seq2758814 114 2e-23
>seq3088272
Length=8608
Score = 199 bits (220), Expect = 6e-49
Identities = 155/185 (84%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 101 ACAATCTGGAGCCAAGGCCACCGCTCCTGATAACTCCTGGCCTTGCGCGCAAACAATTCC 160
|||||| |||||| ||||| ||| ||||||||||||||||||| |||||||||| |
Sbjct 6205 ACAATCCTGAGCCAGGGCCAGCGCGCCTGATAACTCCTGGCCTTTTCAGCAAACAATTGC 6264
Query 161 GGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACCAAGCCATAC 220
|||||||| |||| ||||||||||||||| || || |||||||||||| |||| |||||
Sbjct 6265 GGCTCCGGATGCAGCGGGTTGATCCGCAGAACGCCATGCTCCACATCCGCCAACCCATAA 6324
Query 221 GGCGCATACACCTCGCCCGTCGCCACTTCCAGGCCAATACAGGTGCCCGCCACCAGGTAG 280
|||||||||||||| ||||| || || |||| | || || |||||||||||||| ||
Sbjct 6325 GGCGCATACACCTCACCCGTGGCAACGTCCAAAGCGATGCACGTGCCCGCCACCAGATAC 6384
Query 281 CGGTC 285
|||||
Sbjct 6385 CGGTC 6389
>seq274308
Length=7822
Score = 145 bits (160), Expect = 1e-32
Identities = 116/140 (83%), Gaps = 0/140 (0%)
Strand=Plus/Plus
Query 101 ACAATCTGGAGCCAAGGCCACCGCTCCTGATAACTCCTGGCCTTGCGCGCAAACAATTCC 160
|| |||| |||||||||||| ||| |||||||||| | ||||||| || ||||||||
Sbjct 7670 ACGATCTTGAGCCAAGGCCAGCGCGCCTGATAACTGCGGGCCTTGGCGGCGAACAATTCA 7729
Query 161 GGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACCAAGCCATAC 220
||||| | |||| |||||||||||||| || ||||||||||||||| |||| |||||
Sbjct 7730 GGCTCACGATGCAGCGGGTTGATCCGCAATACGCCCTGCTCCACATCCGCCAACCCATAG 7789
Query 221 GGCGCATACACCTCGCCCGT 240
||||| ||||| ||||| ||
Sbjct 7790 GGCGCGTACACTTCGCCGGT 7809
>seq2858992
Length=278
Score = 143 bits (158), Expect = 4e-32
Identities = 117/142 (82%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 99 CCACAATCTGGAGCCAAGGCCACCGCTCCTGATAACTCCTGGCCTTGCGCGCAAACAATT 158
|||| ||| |||||||||||| ||| |||||||||||||||| ||| || ||||| |
Sbjct 124 CCACGATCGTGAGCCAAGGCCAGCGCGCCTGATAACTCCTGGCTTTGGCGGCGAACAACT 183
Query 159 CCGGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACCAAGCCAT 218
| ||||| |||||| |||||| || |||| ||| ||||||||||||||| |||| ||||
Sbjct 184 CAGGCTCGCGGTGCAGCGGGTTAATGCGCAACACGCCCTGCTCCACATCCGCCAACCCAT 243
Query 219 ACGGCGCATACACCTCGCCCGT 240
| ||||| ||||| ||||| ||
Sbjct 244 AGGGCGCGTACACTTCGCCGGT 265
>seq2786732
Length=228
Score = 143 bits (158), Expect = 4e-32
Identities = 112/134 (84%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 152 AACAATTCCGGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACC 211
||||| || ||||||||||||| |||||| || |||| ||| ||||||||||||||| |
Sbjct 1 AACAACTCAGGCTCCGGGTGCAGCGGGTTAATGCGCAACACGCCCTGCTCCACATCCGCT 60
Query 212 AAGCCATACGGCGCATACACCTCGCCCGTCGCCACTTCCAGGCCAATACAGGTGCCCGCC 271
|||||||| ||||||||||| ||||| || | | ||||| || || |||||||| |||
Sbjct 61 AAGCCATAGGGCGCATACACTTCGCCGGTGTCGATCTCCAGCCCGATGCAGGTGCCGGCC 120
Query 272 ACCAGGTAGCGGTC 285
|||||||| |||||
Sbjct 121 ACCAGGTAACGGTC 134
>seq2758814
Length=216
Score = 114 bits (126), Expect = 2e-23
Identities = 95/116 (82%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 99 CCACAATCTGGAGCCAAGGCCACCGCTCCTGATAACTCCTGGCCTTGCGCGCAAACAATT 158
|||| |||| ||||||||||| ||| | |||||||| | ||||||| || ||||| |
Sbjct 116 CCACGATCTTCAGCCAAGGCCAGCGCGCTTGATAACTGCGGGCCTTGGCGGCGAACAACT 57
Query 159 CCGGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACCAAG 214
| ||||||||||||| |||||| || |||| ||| ||||||||||||||| | |||
Sbjct 56 CAGGCTCCGGGTGCAGCGGGTTAATGCGCAACACGCCCTGCTCCACATCCGCTAAG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 791585320545
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |