Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002196.1 Length=286 Score E Sequences producing significant alignments: (Bits) Value seq3088272 199 6e-49 seq274308 145 1e-32 seq2858992 143 4e-32 seq2786732 143 4e-32 seq2758814 114 2e-23 >seq3088272 Length=8608 Score = 199 bits (220), Expect = 6e-49 Identities = 155/185 (84%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 101 ACAATCTGGAGCCAAGGCCACCGCTCCTGATAACTCCTGGCCTTGCGCGCAAACAATTCC 160 |||||| |||||| ||||| ||| ||||||||||||||||||| |||||||||| | Sbjct 6205 ACAATCCTGAGCCAGGGCCAGCGCGCCTGATAACTCCTGGCCTTTTCAGCAAACAATTGC 6264 Query 161 GGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACCAAGCCATAC 220 |||||||| |||| ||||||||||||||| || || |||||||||||| |||| ||||| Sbjct 6265 GGCTCCGGATGCAGCGGGTTGATCCGCAGAACGCCATGCTCCACATCCGCCAACCCATAA 6324 Query 221 GGCGCATACACCTCGCCCGTCGCCACTTCCAGGCCAATACAGGTGCCCGCCACCAGGTAG 280 |||||||||||||| ||||| || || |||| | || || |||||||||||||| || Sbjct 6325 GGCGCATACACCTCACCCGTGGCAACGTCCAAAGCGATGCACGTGCCCGCCACCAGATAC 6384 Query 281 CGGTC 285 ||||| Sbjct 6385 CGGTC 6389 >seq274308 Length=7822 Score = 145 bits (160), Expect = 1e-32 Identities = 116/140 (83%), Gaps = 0/140 (0%) Strand=Plus/Plus Query 101 ACAATCTGGAGCCAAGGCCACCGCTCCTGATAACTCCTGGCCTTGCGCGCAAACAATTCC 160 || |||| |||||||||||| ||| |||||||||| | ||||||| || |||||||| Sbjct 7670 ACGATCTTGAGCCAAGGCCAGCGCGCCTGATAACTGCGGGCCTTGGCGGCGAACAATTCA 7729 Query 161 GGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACCAAGCCATAC 220 ||||| | |||| |||||||||||||| || ||||||||||||||| |||| ||||| Sbjct 7730 GGCTCACGATGCAGCGGGTTGATCCGCAATACGCCCTGCTCCACATCCGCCAACCCATAG 7789 Query 221 GGCGCATACACCTCGCCCGT 240 ||||| ||||| ||||| || Sbjct 7790 GGCGCGTACACTTCGCCGGT 7809 >seq2858992 Length=278 Score = 143 bits (158), Expect = 4e-32 Identities = 117/142 (82%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 99 CCACAATCTGGAGCCAAGGCCACCGCTCCTGATAACTCCTGGCCTTGCGCGCAAACAATT 158 |||| ||| |||||||||||| ||| |||||||||||||||| ||| || ||||| | Sbjct 124 CCACGATCGTGAGCCAAGGCCAGCGCGCCTGATAACTCCTGGCTTTGGCGGCGAACAACT 183 Query 159 CCGGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACCAAGCCAT 218 | ||||| |||||| |||||| || |||| ||| ||||||||||||||| |||| |||| Sbjct 184 CAGGCTCGCGGTGCAGCGGGTTAATGCGCAACACGCCCTGCTCCACATCCGCCAACCCAT 243 Query 219 ACGGCGCATACACCTCGCCCGT 240 | ||||| ||||| ||||| || Sbjct 244 AGGGCGCGTACACTTCGCCGGT 265 >seq2786732 Length=228 Score = 143 bits (158), Expect = 4e-32 Identities = 112/134 (84%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 152 AACAATTCCGGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACC 211 ||||| || ||||||||||||| |||||| || |||| ||| ||||||||||||||| | Sbjct 1 AACAACTCAGGCTCCGGGTGCAGCGGGTTAATGCGCAACACGCCCTGCTCCACATCCGCT 60 Query 212 AAGCCATACGGCGCATACACCTCGCCCGTCGCCACTTCCAGGCCAATACAGGTGCCCGCC 271 |||||||| ||||||||||| ||||| || | | ||||| || || |||||||| ||| Sbjct 61 AAGCCATAGGGCGCATACACTTCGCCGGTGTCGATCTCCAGCCCGATGCAGGTGCCGGCC 120 Query 272 ACCAGGTAGCGGTC 285 |||||||| ||||| Sbjct 121 ACCAGGTAACGGTC 134 >seq2758814 Length=216 Score = 114 bits (126), Expect = 2e-23 Identities = 95/116 (82%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 99 CCACAATCTGGAGCCAAGGCCACCGCTCCTGATAACTCCTGGCCTTGCGCGCAAACAATT 158 |||| |||| ||||||||||| ||| | |||||||| | ||||||| || ||||| | Sbjct 116 CCACGATCTTCAGCCAAGGCCAGCGCGCTTGATAACTGCGGGCCTTGGCGGCGAACAACT 57 Query 159 CCGGCTCCGGGTGCAACGGGTTGATCCGCAGCACACCCTGCTCCACATCCACCAAG 214 | ||||||||||||| |||||| || |||| ||| ||||||||||||||| | ||| Sbjct 56 CAGGCTCCGGGTGCAGCGGGTTAATGCGCAACACGCCCTGCTCCACATCCGCTAAG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 791585320545