Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002205.1 Length=300 Score E Sequences producing significant alignments: (Bits) Value seq2694932 275 1e-71 seq2541514 273 4e-71 seq2516702 262 7e-68 seq2521474 250 4e-64 seq2551234 190 3e-46 seq2108602 185 1e-44 seq1957059 178 2e-42 seq1831662 172 9e-41 seq450300 168 1e-39 seq674230 159 6e-37 seq2312139 78.8 2e-12 >seq2694932 Length=196 Score = 275 bits (304), Expect = 1e-71 Identities = 158/162 (98%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 139 GCGTTGGCCGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACCTG 198 ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| Sbjct 1 GCGTTGGCCGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGGACCAGGTTGACCTG 60 Query 199 GTCTGCGCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAAAGTGTG 258 ||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 GTCGGGGCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAAAGTGTG 120 Query 259 AACTCCTGCCGATGGCTGTGACCCCGCGCCGTGCTACGTCGA 300 |||||||||||| ||||||||||||||||||||||||||||| Sbjct 121 AACTCCTGCCGAAGGCTGTGACCCCGCGCCGTGCTACGTCGA 162 >seq2541514 Length=172 Score = 273 bits (302), Expect = 4e-71 Identities = 165/173 (95%), Gaps = 1/173 (1%) Strand=Plus/Plus Query 27 GATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGCAAG 86 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 1 GATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGATGGTCCATGTGCATGTCGGCAAG 60 Query 87 AATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACTACGTCGGCGTTGGC 146 ||| || | |||||||||||||||||||||||||||||||||| ||||| |||||||||| Sbjct 61 AATGTTTG-CCACCGCAAGAGGATGGGTGACATACGCCTCGCCGCTACGACGGCGTTGGC 119 Query 147 CGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACCTGG 199 ||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 120 CGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGGACCAGGTTGACCTGG 172 >seq2516702 Length=169 Score = 262 bits (290), Expect = 7e-68 Identities = 161/170 (95%), Gaps = 1/170 (1%) Strand=Plus/Minus Query 27 GATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGCAAG 86 ||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||| Sbjct 169 GATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGATGGTCCATGTGCATGTCGGCAAG 110 Query 87 AATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACTACGTCGGCGTTGGC 146 |||||| | ||||||||||||||||||||||||||||||| || || || |||||||||| Sbjct 109 AATATTTG-CCACCGCAAGAGGATGGGTGACATACGCCTCACCGCTTCGGCGGCGTTGGC 51 Query 147 CGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACC 196 ||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 50 CGTCGTGGGCTTGTTCGGCGTAGAAATACGCTCGGCGGACCAGGTTGACC 1 >seq2521474 Length=169 Score = 250 bits (276), Expect = 4e-64 Identities = 144/148 (97%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 153 GGGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACCTGGTCTGCGCCGAGGT 212 ||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| Sbjct 1 GGGCTTGTTCGGCGTAGAAATACGCTCGGCGGACCAGGTTGACCTGGTCTGGGCCGAGGT 60 Query 213 AGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAAAGTGTGAACTCCTGCCGATG 272 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || Sbjct 61 AGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAAAGTATGAACTCCTGCCGTTG 120 Query 273 GCTGTGACCCCGCGCCGTGCTACGTCGA 300 |||||||||||||||||||||||||||| Sbjct 121 GCTGTGACCCCGCGCCGTGCTACGTCGA 148 >seq2551234 Length=173 Score = 190 bits (210), Expect = 3e-46 Identities = 121/130 (93%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 24 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCCATGTGCACGTCGGC 83 |||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||| Sbjct 129 TTCGATCACGTCATGCAGCATCGCCGCCATCAGGCTCTGATGGTCCATGTGCATGTCGGC 70 Query 84 AAGAATATTCGGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACTACGTCGGCGTT 143 ||||||||| |||||| ||||||||||| |||||||||||||| ||||| || ||||||| Sbjct 69 AAGAATATT-GGCCACGGCAAGAGGATGCGTGACATACGCCTCACCACTGCGGCGGCGTT 11 Query 144 GGCCGTCGTG 153 |||||||||| Sbjct 10 GGCCGTCGTG 1 >seq2108602 Length=127 Score = 185 bits (204), Expect = 1e-44 Identities = 114/122 (93%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 94 GGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACTACGTCGGCGTTGGCCGTCGTG 153 |||||| ||||||||||| |||||||||||||| ||||| || ||||||||||||||||| Sbjct 4 GGCCACGGCAAGAGGATGCGTGACATACGCCTCACCACTGCGGCGGCGTTGGCCGTCGTG 63 Query 154 GGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACCTGGTCTGCGCCGAGGTA 213 ||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| Sbjct 64 TGCTTGTTCGGCGTAGAAATACGCTCGGCGGACCAGGTTGACCTGGTCTGGGCCGAGGTA 123 Query 214 GG 215 || Sbjct 124 GG 125 >seq1957059 Length=127 Score = 178 bits (196), Expect = 2e-42 Identities = 104/108 (96%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 193 GACCTGGTCTGCGCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 252 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 GACCTGGTCTGGGCCGAGGTAGGTCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 Query 253 AGTGTGAACTCCTGCCGATGGCTGTGACCCCGCGCCGTGCTACGTCGA 300 ||||| ||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 AGTGTTAACTCCTGCCGTTGGCTGTGACCCCGCGCCGTGCTACGTCGA 108 >seq1831662 Length=127 Score = 172 bits (190), Expect = 9e-41 Identities = 103/108 (95%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 193 GACCTGGTCTGCGCCGAGGTAGGCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 252 ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct 1 GACCTGGTCTGGGCCGAGGTAGGTCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAA 60 Query 253 AGTGTGAACTCCTGCCGATGGCTGTGACCCCGCGCCGTGCTACGTCGA 300 ||| | ||||||||||| |||||||||||||||||||||||||||||| Sbjct 61 AGTATTAACTCCTGCCGTTGGCTGTGACCCCGCGCCGTGCTACGTCGA 108 >seq450300 Length=101 Score = 168 bits (186), Expect = 1e-39 Identities = 98/101 (97%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 155 GCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACCTGGTCTGCGCCGAGGTAG 214 ||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| Sbjct 101 GCTTGTTCGGCGTAGAAATACGCTCGGCGGACCAGGTTGACCTGGTCTGGGCCGAGGTAG 42 Query 215 GCCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAAAGT 255 | ||||||||||||||||||||||||||||||||||||||| Sbjct 41 GTCGATAAGCGATCGGCGAGGGCGTCTATGCTCGGCAAAGT 1 >seq674230 Length=106 Score = 159 bits (176), Expect = 6e-37 Identities = 97/103 (94%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 94 GGCCACCGCAAGAGGATGGGTGACATACGCCTCGCCACTACGTCGGCGTTGGCCGTCGTG 153 |||||| ||||||||||| |||||||||||||| ||||| || ||||||||||||||||| Sbjct 103 GGCCACGGCAAGAGGATGCGTGACATACGCCTCACCACTGCGGCGGCGTTGGCCGTCGTG 44 Query 154 GGCTTGTTCGGCGTAGAAATACGCTCGGCGAACCAGGTTGACC 196 |||||||||||||||||||||||||||||| |||||||||||| Sbjct 43 GGCTTGTTCGGCGTAGAAATACGCTCGGCGGACCAGGTTGACC 1 >seq2312139 Length=139 Score = 78.8 bits (86), Expect = 2e-12 Identities = 45/46 (98%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 24 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGAAGGTCC 69 |||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 46 TTCGATCACGTCATGCAGCATCGCGGCCATCAGGCTCTGATGGTCC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 835044906771