Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09] 3,088,511 sequences; 2,785,377,831 total letters Query= AAMG01002223.1 Length=366 Score E Sequences producing significant alignments: (Bits) Value seq2893598 140 7e-31 seq2082712 136 8e-30 seq210950 134 3e-29 seq2356423 131 3e-28 seq2257643 129 1e-27 seq2037304 129 1e-27 seq2249034 127 4e-27 seq1645186 127 4e-27 seq1733052 123 5e-26 seq312353 123 5e-26 seq348161 105 1e-20 seq1867293 100 6e-19 seq2726030 89.7 1e-15 seq353856 80.6 6e-13 >seq2893598 Length=321 Score = 140 bits (154), Expect = 7e-31 Identities = 189/260 (73%), Gaps = 9/260 (3%) Strand=Plus/Minus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCA-----TAAGGTACATA--CAAGCTCC 53 ||||||||||||||||||||||| ||||| ||| ||| || || |||| | Sbjct 258 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGAGTAACGTCAATCACCAAGGTTA 199 Query 54 CACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCC 113 || | || | || ||| | |||| ||||||| ||| || ||||| || Sbjct 198 TTAACCTC-AATGCCTTCCTCCTCGCTGAAAGTGCTTTACAACCCGAAGG-CCTTCTTCA 141 Query 114 TTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCT 173 ||||| | |||||| |||| || || |||||| ||||||||| ||||||||||| Sbjct 140 CACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCT 81 Query 174 CCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCC 233 ||||||||||| |||||||||||||||||||| ||||| | | |||||||||| | | Sbjct 80 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGC 21 Query 234 TATCCATCGTAGGCTAGGTG 253 || ||||| | ||||||| Sbjct 20 TAGGGATCGTCGCCTAGGTG 1 >seq2082712 Length=127 Score = 136 bits (150), Expect = 8e-30 Identities = 104/122 (85%), Gaps = 1/122 (1%) Strand=Plus/Plus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| ||| ||||| || ||||| | ||||||| |||| || ||| || | Sbjct 7 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCCT 65 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208 || |||||||||| |||||||||||||||||||||| |||||||||||||||||||| || Sbjct 66 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 125 Query 209 TG 210 || Sbjct 126 TG 127 >seq210950 Length=3273 Score = 134 bits (148), Expect = 3e-29 Identities = 133/172 (77%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174 |||||| | | ||| ||||||| |||||||||| || ||||| ||||||||||| Sbjct 577 TCACGCGGCGTTGCTCCGTCAGACTTTCGTCCATTGCGGAAGATTCCCTACTGCTGCCTC 518 Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234 |||||||||| ||| |||||||||||| ||| ||||| || | |||||||| | || Sbjct 517 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCT 458 Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286 | |||||| | || |||| ||||||||| | || |||| |||||| |||| Sbjct 457 ACGCATCGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATGCGACGC 406 >seq2356423 Length=144 Score = 131 bits (144), Expect = 3e-28 Identities = 108/132 (82%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 148 TTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAAT 207 ||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| | Sbjct 1 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 60 Query 208 GTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGC 267 |||| || | |||||||||| | || ||||| | || |||| ||| ||||| | | Sbjct 61 GTGGCTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 120 Query 268 CTACTACCTAAT 279 | |||| ||||| Sbjct 121 CAACTAGCTAAT 132 >seq2257643 Length=133 Score = 129 bits (142), Expect = 1e-27 Identities = 97/113 (86%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| ||| ||||| || ||||| | ||||||| |||| || ||| |||| Sbjct 112 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGGTCAGGCTTTCGCCCAT 54 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 53 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 1 >seq2037304 Length=127 Score = 129 bits (142), Expect = 1e-27 Identities = 103/124 (83%), Gaps = 0/124 (0%) Strand=Plus/Minus Query 104 ACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTC 163 |||||| || ||||| | ||||||| |||| || ||| |||||| |||||||||| | Sbjct 124 ACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 65 Query 164 ACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTC 223 |||||||||||||||||||| |||||||||||||||||||| |||| || | ||||| Sbjct 64 CCTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 5 Query 224 TCAG 227 |||| Sbjct 4 TCAG 1 >seq2249034 Length=132 Score = 127 bits (140), Expect = 4e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175 ||||| | ||||||| |||| || ||| |||||| |||||||||| ||||||||||||| Sbjct 7 CACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCC 66 Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 || |||||| |||||||||||||||||||| |||| || | |||||||||| Sbjct 67 CGCAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 119 >seq1645186 Length=127 Score = 127 bits (140), Expect = 4e-27 Identities = 96/113 (85%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175 ||||| | ||||||| |||| || ||| |||||| |||||||||| |||||||||| || Sbjct 121 CACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCGCC 62 Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228 ||||||||| |||||||||||||||||||| |||| || | |||||||||| Sbjct 61 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 9 >seq1733052 Length=127 Score = 123 bits (136), Expect = 5e-26 Identities = 96/113 (85%), Gaps = 1/113 (1%) Strand=Plus/Minus Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148 ||||||||||| ||| ||||| || ||||| | ||||||| |||| | ||| |||| Sbjct 112 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGATCAGGGTTTCGCCCAT 54 Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 || |||||||||| |||||||||||||||||||||| |||||||||||||||| Sbjct 53 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 1 >seq312353 Length=471 Score = 123 bits (136), Expect = 5e-26 Identities = 106/130 (82%), Gaps = 1/130 (1%) Strand=Plus/Minus Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141 ||||| ||||||| || ||| |||||||| |||||| | ||||||| |||| | Sbjct 130 AAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGGTTG 72 Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201 | |||||| |||||||||| |||||||||||||||||||||| ||| |||||||||||| Sbjct 71 CCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 12 Query 202 TCCAATGTGG 211 ||| ||||| Sbjct 11 CCCAGTGTGG 2 >seq348161 Length=665 Score = 105 bits (116), Expect = 1e-20 Identities = 138/189 (73%), Gaps = 13/189 (7%) Strand=Plus/Plus Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCA--CAC 58 ||||||||||||| ||||||||| ||||||||| | ||||| || ||||| || Sbjct 481 GGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTTTGGGTACCGTCA---TCCCAACCAG 537 Query 59 GT-------GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCAT 111 || || || ||| || || | ||||| ||||||| ||| || ||||| | Sbjct 538 GTATTAGCCGGCTGGATTTCTTTCCCAACAAAAGGGCTTTACAACCCGAAGG-CCTTCTT 596 Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171 | ||||| ||||||| |||| || || |||||| |||||||||| ||||||||| Sbjct 597 CACCCACGCGGTATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGC 656 Query 172 CTCCCGTAG 180 ||||||||| Sbjct 657 CTCCCGTAG 665 >seq1867293 Length=127 Score = 100 bits (110), Expect = 6e-19 Identities = 91/115 (79%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224 |||||||||||||||||||| |||||||||||||||||||| |||| || | |||||| Sbjct 127 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 68 Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| | || ||||| | || |||| ||| ||||| | || |||| ||||| Sbjct 67 CAGGCCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 13 >seq2726030 Length=205 Score = 89.7 bits (98), Expect = 1e-15 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Plus Query 191 CGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAG 250 ||||||||||||||| ||||| | | |||||||||| | ||| ||||| | |||| Sbjct 1 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 60 Query 251 GTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||||||| ||||||||||||||| ||||| Sbjct 61 GTGGGCCATTACCCCGCCTACTAGCTAAT 89 >seq353856 Length=588 Score = 80.6 bits (88), Expect = 6e-13 Identities = 71/89 (80%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 191 CGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAG 250 ||||||||||||||| ||||| | | |||||||||| | ||| ||||| | |||| Sbjct 588 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 529 Query 251 GTGGGCCGTTACCCCGCCTACTACCTAAT 279 ||| ||| ||||||| ||||||| ||||| Sbjct 528 GTGAGCCATTACCCCACCTACTAGCTAAT 500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1035789994432