Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Capreolus_20capreolus_20[genbank_20GCA_5F000751575.1_202014-09-09]
3,088,511 sequences; 2,785,377,831 total letters
Query= AAMG01002223.1
Length=366
Score E
Sequences producing significant alignments: (Bits) Value
seq2893598 140 7e-31
seq2082712 136 8e-30
seq210950 134 3e-29
seq2356423 131 3e-28
seq2257643 129 1e-27
seq2037304 129 1e-27
seq2249034 127 4e-27
seq1645186 127 4e-27
seq1733052 123 5e-26
seq312353 123 5e-26
seq348161 105 1e-20
seq1867293 100 6e-19
seq2726030 89.7 1e-15
seq353856 80.6 6e-13
>seq2893598
Length=321
Score = 140 bits (154), Expect = 7e-31
Identities = 189/260 (73%), Gaps = 9/260 (3%)
Strand=Plus/Minus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCA-----TAAGGTACATA--CAAGCTCC 53
||||||||||||||||||||||| ||||| ||| ||| || || |||| |
Sbjct 258 GGCTGCTGGCACGGAGTTAGCCGGTGCTTCTTCTGCGAGTAACGTCAATCACCAAGGTTA 199
Query 54 CACACGTGGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCATCC 113
|| | || | || ||| | |||| ||||||| ||| || ||||| ||
Sbjct 198 TTAACCTC-AATGCCTTCCTCCTCGCTGAAAGTGCTTTACAACCCGAAGG-CCTTCTTCA 141
Query 114 TTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCT 173
||||| | |||||| |||| || || |||||| ||||||||| |||||||||||
Sbjct 140 CACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCT 81
Query 174 CCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCC 233
||||||||||| |||||||||||||||||||| ||||| | | |||||||||| | |
Sbjct 80 CCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGC 21
Query 234 TATCCATCGTAGGCTAGGTG 253
|| ||||| | |||||||
Sbjct 20 TAGGGATCGTCGCCTAGGTG 1
>seq2082712
Length=127
Score = 136 bits (150), Expect = 8e-30
Identities = 104/122 (85%), Gaps = 1/122 (1%)
Strand=Plus/Plus
Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148
||||||||||| ||| ||||| || ||||| | ||||||| |||| || ||| || |
Sbjct 7 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCCT 65
Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATG 208
|| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 66 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 125
Query 209 TG 210
||
Sbjct 126 TG 127
>seq210950
Length=3273
Score = 134 bits (148), Expect = 3e-29
Identities = 133/172 (77%), Gaps = 0/172 (0%)
Strand=Plus/Minus
Query 115 TCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTC 174
|||||| | | ||| ||||||| |||||||||| || ||||| |||||||||||
Sbjct 577 TCACGCGGCGTTGCTCCGTCAGACTTTCGTCCATTGCGGAAGATTCCCTACTGCTGCCTC 518
Query 175 CCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCT 234
|||||||||| ||| |||||||||||| ||| ||||| || | |||||||| | ||
Sbjct 517 CCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGCCGATCACCCTCTCAGGTCGGCT 458
Query 235 ATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAATGGAACGC 286
| |||||| | || |||| ||||||||| | || |||| |||||| ||||
Sbjct 457 ACGCATCGTCGCCTTGGTGAGCCGTTACCTCACCAACTAGCTAATGCGACGC 406
>seq2356423
Length=144
Score = 131 bits (144), Expect = 3e-28
Identities = 108/132 (82%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 148 TTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAAT 207
||| |||||||||| |||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1 TTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGT 60
Query 208 GTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGC 267
|||| || | |||||||||| | || ||||| | || |||| ||| ||||| | |
Sbjct 61 GTGGCTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCAC 120
Query 268 CTACTACCTAAT 279
| |||| |||||
Sbjct 121 CAACTAGCTAAT 132
>seq2257643
Length=133
Score = 129 bits (142), Expect = 1e-27
Identities = 97/113 (86%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148
||||||||||| ||| ||||| || ||||| | ||||||| |||| || ||| ||||
Sbjct 112 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGGTCAGGCTTTCGCCCAT 54
Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 53 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 1
>seq2037304
Length=127
Score = 129 bits (142), Expect = 1e-27
Identities = 103/124 (83%), Gaps = 0/124 (0%)
Strand=Plus/Minus
Query 104 ACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTC 163
|||||| || ||||| | ||||||| |||| || ||| |||||| |||||||||| |
Sbjct 124 ACCTTCTTCACACACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCC 65
Query 164 ACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTC 223
|||||||||||||||||||| |||||||||||||||||||| |||| || | |||||
Sbjct 64 CCTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 5
Query 224 TCAG 227
||||
Sbjct 4 TCAG 1
>seq2249034
Length=132
Score = 127 bits (140), Expect = 4e-27
Identities = 96/113 (85%), Gaps = 0/113 (0%)
Strand=Plus/Plus
Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175
||||| | ||||||| |||| || ||| |||||| |||||||||| |||||||||||||
Sbjct 7 CACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCC 66
Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
|| |||||| |||||||||||||||||||| |||| || | ||||||||||
Sbjct 67 CGCAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 119
>seq1645186
Length=127
Score = 127 bits (140), Expect = 4e-27
Identities = 96/113 (85%), Gaps = 0/113 (0%)
Strand=Plus/Minus
Query 116 CACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGCCTCC 175
||||| | ||||||| |||| || ||| |||||| |||||||||| |||||||||| ||
Sbjct 121 CACGCGGCATGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCGCC 62
Query 176 CGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGA 228
||||||||| |||||||||||||||||||| |||| || | ||||||||||
Sbjct 61 CGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGA 9
>seq1733052
Length=127
Score = 123 bits (136), Expect = 5e-26
Identities = 96/113 (85%), Gaps = 1/113 (1%)
Strand=Plus/Minus
Query 89 TTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCAT 148
||||||||||| ||| ||||| || ||||| | ||||||| |||| | ||| ||||
Sbjct 112 TTTACAATCCGAAGA-CCTTCTTCACACACGCGGCATGGCTGGATCAGGGTTTCGCCCAT 54
Query 149 TGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
|| |||||||||| |||||||||||||||||||||| ||||||||||||||||
Sbjct 53 TGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGT 1
>seq312353
Length=471
Score = 123 bits (136), Expect = 5e-26
Identities = 106/130 (82%), Gaps = 1/130 (1%)
Strand=Plus/Minus
Query 82 AAAGAAGTTTACAATCCGTAGAACCTTCATCCTTCACGCTACTTGGCTGGTTCAGACTCT 141
||||| ||||||| || ||| |||||||| |||||| | ||||||| |||| |
Sbjct 130 AAAGAGCTTTACAACCC-TAGGGCCTTCATCACTCACGCGGCATGGCTGGATCAGGGTTG 72
Query 142 CGTCCATTGACCAATATTCCTCACTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGT 201
| |||||| |||||||||| |||||||||||||||||||||| ||| ||||||||||||
Sbjct 71 CCCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGT 12
Query 202 TCCAATGTGG 211
||| |||||
Sbjct 11 CCCAGTGTGG 2
>seq348161
Length=665
Score = 105 bits (116), Expect = 1e-20
Identities = 138/189 (73%), Gaps = 13/189 (7%)
Strand=Plus/Plus
Query 1 GGCTGCTGGCACGGAGTTAGCCGATGCTTATTCATAAGGTACATACAAGCTCCCA--CAC 58
||||||||||||| ||||||||| ||||||||| | ||||| || ||||| ||
Sbjct 481 GGCTGCTGGCACGAAGTTAGCCGGTGCTTATTCTTTGGGTACCGTCA---TCCCAACCAG 537
Query 59 GT-------GGAAGGTTTTATTCCCTTATAAAAGAAGTTTACAATCCGTAGAACCTTCAT 111
|| || || ||| || || | ||||| ||||||| ||| || ||||| |
Sbjct 538 GTATTAGCCGGCTGGATTTCTTTCCCAACAAAAGGGCTTTACAACCCGAAGG-CCTTCTT 596
Query 112 CCTTCACGCTACTTGGCTGGTTCAGACTCTCGTCCATTGACCAATATTCCTCACTGCTGC 171
| ||||| ||||||| |||| || || |||||| |||||||||| |||||||||
Sbjct 597 CACCCACGCGGTATGGCTGGATCAGGCTTGCGCCCATTGTCCAATATTCCCCACTGCTGC 656
Query 172 CTCCCGTAG 180
|||||||||
Sbjct 657 CTCCCGTAG 665
>seq1867293
Length=127
Score = 100 bits (110), Expect = 6e-19
Identities = 91/115 (79%), Gaps = 0/115 (0%)
Strand=Plus/Minus
Query 165 CTGCTGCCTCCCGTAGGAGTTTGGACCGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCT 224
|||||||||||||||||||| |||||||||||||||||||| |||| || | ||||||
Sbjct 127 CTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCT 68
Query 225 CAGAACCCCTATCCATCGTAGGCTAGGTGGGCCGTTACCCCGCCTACTACCTAAT 279
||| | || ||||| | || |||| ||| ||||| | || |||| |||||
Sbjct 67 CAGGCCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAAT 13
>seq2726030
Length=205
Score = 89.7 bits (98), Expect = 1e-15
Identities = 73/89 (82%), Gaps = 0/89 (0%)
Strand=Plus/Plus
Query 191 CGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAG 250
||||||||||||||| ||||| | | |||||||||| | ||| ||||| | ||||
Sbjct 1 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 60
Query 251 GTGGGCCGTTACCCCGCCTACTACCTAAT 279
||||||| ||||||||||||||| |||||
Sbjct 61 GTGGGCCATTACCCCGCCTACTAGCTAAT 89
>seq353856
Length=588
Score = 80.6 bits (88), Expect = 6e-13
Identities = 71/89 (80%), Gaps = 0/89 (0%)
Strand=Plus/Minus
Query 191 CGTGTCTCAGTTCCAATGTGGGGGACCTTCCTCTCAGAACCCCTATCCATCGTAGGCTAG 250
||||||||||||||| ||||| | | |||||||||| | ||| ||||| | ||||
Sbjct 588 CGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAG 529
Query 251 GTGGGCCGTTACCCCGCCTACTACCTAAT 279
||| ||| ||||||| ||||||| |||||
Sbjct 528 GTGAGCCATTACCCCACCTACTAGCTAAT 500
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1035789994432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |